Searcharxiv⌕ Search

arXiv subjects

Ido Lavi

Publications and source records attributed to Ido Lavi.

6 recordsLinked to original sources
arXiv2025

Cell clusters sense their global shape to drive collective migration

The collective migration of epithelial groups of cells plays a central role in processes such as embryo development, wound healing, and cancer invasion. While finite cell clusters are known to collectively migrate in response to external gradients, the competing effect of possible endogenous cues is largely unknown.Here, we demonstrate that the polarization of peripheral cells that pull the cluster's edge outward is sufficient to induce and sustain the collective migration of confluent clusters. We use a general continuum model to show that the underlying shape-sensing mechanism is purely mechanical, relying on long-range hydrodynamic interactions and cell-cell alignment forces. As a proof-of-concept, we validate our findings with experiments on monolayer clusters from various cell lines, where we control initial shapes and sizes. The mechanism operates independently of external signals and will generally interfere with them. Specifically, we predict and observe experimentally that it can override collective durotaxis, reversing the direction of migration. Together, our results offer a physical framework for understanding how cell interactions govern the interplay between global shape and collective motion and afford engineering principles for optimal control and manipulation of cell cluster shape and motion.

physics.bio-ph↗
arXiv2025

Collective multicellular patterns arising from cadherin-linked cytoskeletal domains

In multicellular systems, adhesion complexes, such as those composed of E-cadherin and associated catenins, mechanically couple neighboring cells by directly linking their actin-based cytoskeletal assemblies. However, the mechanics of how forces are transmitted across these adhesions remains largely unstudied. Here, we introduce a biophysical model that explicitly couples adhesion complex dynamics to intracellular mechanics across cell boundaries. A cadherin dimer plus associated catenins connecting two cells is represented as a spring whose ends experience drag with respect to the moving actin cytoskeleton. The cytoskeleton is modeled as a contractile gel driven by myosin activity in its bulk and forces from adhesion on its boundaries. Our model captures this bidirectional coupling via a coarse-grained continuum framework and reveals a range of observed cell- and tissue-scale behaviors. These include global cell polarization of the multicellular collective, other polarization patterns and oscillatory dynamics, spontaneously formed actin rings within cells, and supracellular stress chains. Many of these features arise from modeling the direct mechanical coupling between cytoskeleton and adhesion. This model can be extended to other adhesion-cytoskeleton feedback systems and used to advance our understanding of multicellular tissue dynamics, particularly during development.

physics.bio-ph↗
arXiv2024

Dynamical arrest in active nematic turbulence

Active fluids display spontaneous turbulent-like flows known as active turbulence. Recent work revealed that these flows have universal features, independent of the material properties and of the presence of topological defects. However, the differences between defect-laden and defect-free active turbulence remain largely unexplored. Here, by means of large-scale numerical simulations, we show that defect-free active nematic turbulence can undergo dynamical arrest. This state is characterized by an emergent network of nematic domain walls that channels coherent streams and suppresses chaotic flows. As the system evolves, the branched wall network produces a large-scale pattern with tree-like topological properties. We find that flow alignment -- the tendency of nematics to reorient under shear -- enhances large-scale chaotic jets in contractile rodlike systems while promoting dynamical arrest in extensile systems. We further show that dynamical arrest persists regardless of whether defects are prohibited by construction or simply fail to form due to a high energy cost of defect cores. Taken together, our findings reveal a striking pattern-formation mechanism, with labyrinths emerging from active turbulence, and illuminate the rich transitional regime between defect-free and defect-laden dynamics. These behaviors call for the experimental realization of active nematics at vanishing or low defect densities, and underscore that, in extensile rodlike nematics, topological defects enable turbulence by preventing dynamical arrest.

cond-mat.soft↗
arXiv2024

Nonlinear spontaneous flow instability in active nematics

Active nematics exhibit spontaneous flows through a well-known linear instability of the uniformly-aligned quiescent state. Here we show that even a linearly stable uniform state can experience a nonlinear instability, resulting in a discontinuous transition to spontaneous flows. In this case, quiescent and flowing states may coexist. Through a weakly nonlinear analysis and a numerical study, we trace the bifurcation diagram of striped patterns and show that the underlying pitchfork bifurcation switches from supercritical (continuous) to subcritical (discontinuous) by varying the flow-alignment parameter. We predict that the discontinuous spontaneous flow transition occurs for a wide range of parameters, including systems of contractile flow-aligning rods. Our predictions are relevant to active nematic turbulence and can potentially be tested in experiments on either cell layers or active cytoskeletal suspensions.

cond-mat.soft↗
arXiv2018

Piping Botnet - Turning Green Technology into a Water Disaster

The current generation of IoT devices is being used by clients and consumers to regulate resources (such as water and electricity) obtained from critical infrastructure (such as urban water services and smart grids), creating a new attack vector against critical infrastructure. In this research we show that smart irrigation systems, a new type of green technology and IoT device aimed at saving water and money, can be used by attackers as a means of attacking urban water services. We present a distributed attack model that can be used by an attacker to attack urban water services using a botnet of commercial smart irrigation systems. Then, we show how a bot running on a compromised device in a LAN can:(1) detect a connected commercial smart irrigation system (RainMachine, BlueSpray, and GreenIQ) within 15 minutes by analyzing LAN's behavior using a dedicated classification model, and (2) launch watering via a commercial smart irrigation system according to an attacker's wishes using spoofing and replay attacks. In addition, we model the damage that can be caused by performing such an attack and show that a standard water tower can be emptied in an hour using a botnet of 1,355 sprinklers and a flood water reservoir can be emptied overnight using a botnet of 23,866 sprinklers. Finally, we discuss countermeasure methods and hypothesize whether the next generation of plumbers will use Kali Linux instead of a monkey wrench.

cs.CR↗