arXiv subjects

Ila Fiete

Publications and source records attributed to Ila Fiete.

At least 19 recordsLinked to original sources

arXiv2026

B[FM]$^2$: Brain Foundation Model via Flow Matching with SplitUNet

EEG foundation models can learn generalizable representations from large-scale EEG corpora to enable single-backbone transfer across diverse clinical and brain-computer interface tasks. Existing models typically discretize the continuous multi-channel EEG waveform into patches or codebook tokens and train a transformer with masked self-supervision. Recognizing that this discretization fragments continuous brain rhythms and obscures fine-grained temporal dynamics, we present B[FM]$^2$(Brain Foundation Model via Flow Matching), whose inductive bias aligns with the data by pretraining directly on the raw signal using continuous-time flow matching without patches, tokenization, or masking. However, multi-channel EEG signals pose an architectural challenge for flow matching: time is densely sampled and highly autocorrelated (thousands of timepoints), while the electrode axis is short (tens of channels) at distinct scalp positions. To address this time-electrode asymmetry, we introduce SplitUNet, a velocity network that factorizes each block into separate 1D temporal and 1D electrode convolutions and downsamples only along time, preserving electrode topology throughout the hierarchy. B[FM]$^2$ sets a new state of the art on 7 of 9 standard downstream EEG classification tasks, using a pretraining budget of only 36,895 segments ($\approx$ 307h), 1-2 orders of magnitude ($\approx$ 30x) less than required by existing EEG foundation models. Further, it generates synthetic EEGs that two board-certified neurologists cannot distinguish from brain data (Cohen's $\kappa =$ -0.096). https://jd730.github.io/projects/BFM2

cs.LG↗

arXiv2026

Attractor Geometry of Transformer Memory: From Conflict Arbitration to Confident Hallucination

Language models draw on two knowledge sources: facts baked into weights (parametric memory, PM) and information in context (working memory, WM). We study two mechanistically distinct failure modes--conflict, when PM and WM disagree and interfere; and hallucination, when the queried fact was never learned. Both produce confident output regardless, making output-based monitoring blind by design. We show both failures share a unified geometric account. In the hidden-state space of autoregressive generation, learned facts form attractor basins. Conflict is basin competition: WM disrupts convergence to the correct basin without raising output entropy. Hallucination is basin absence: the hidden state drifts freely when no memorized basin exists. The frozen LM head, designed for next-token prediction, cannot distinguish these cases and fires confidently either way. We verify this account in a controlled synthetic task-entity identifiers mapped to unique codes with PM installed via LoRA adapters--where ground truth is exact and component roles can be causally isolated through targeted adapter placement. Geometric margin--the hidden state's distance to the nearest memorized basin--reads this geometry directly and separates correct recall from hallucination far more cleanly than output entropy, with zero false refusals where entropy-based detection cannot avoid rejecting the vast majority of correct outputs. The separation holds on natural-language factual queries from the pretrained model with no adaptation, confirming attractor geometry is structural rather than a fine-tuning artifact. The fraction of confident hallucinations follows a scaling law $C = \exp(-c/\bar\Delta)$, growing with scale even as overall error rates fall. Hidden states reliably encode epistemic state; the frozen output head systematically erases it--and this erasure worsens with scale.

cs.AI↗

arXiv2026

The Blessing of Dimensionality in LLM Fine-tuning: A Variance-Curvature Perspective

Weight-perturbation evolution strategies (ES) can fine-tune billion-parameter language models with surprisingly small populations (e.g., $N\!\approx\!30$), contradicting classical zeroth-order curse-of-dimensionality intuition. We also observe a second seemingly separate phenomenon: under fixed hyperparameters, the stochastic fine-tuning reward often rises, peaks, and then degrades in both ES and GRPO. We argue that both effects reflect a shared geometric property of fine-tuning landscapes: they are low-dimensional in curvature. A small set of high-curvature dimensions dominates improvement, producing (i) heterogeneous time scales that yield rise-then-decay under fixed stochasticity, as captured by a minimal quadratic stochastic-ascent model, and (ii) degenerate improving updates, where many random perturbations share similar components along these directions. Using ES as a geometric probe on fine-tuning reward landscapes of GSM8K, ARC-C, and WinoGrande across Qwen2.5-Instruct models (0.5B--7B), we show that reward-improving perturbations remain empirically accessible with small populations across scales. Together, these results reconcile ES scalability with non-monotonic training dynamics and suggest that high-dimensional fine-tuning may admit a broader class of viable optimization methods than worst-case theory implies.

cs.LG↗

arXiv2025

Modular connectivity in neural networks emerges from Poisson noise-motivated regularisation, and promotes robustness and compositional generalisation

Circuits in the brain commonly exhibit modular architectures that factorise complex tasks, resulting in the ability to compositionally generalise and reduce catastrophic forgetting. In contrast, artificial neural networks (ANNs) appear to mix all processing, because modular solutions are difficult to find as they are vanishing subspaces in the space of possible solutions. Here, we draw inspiration from fault-tolerant computation and the Poisson-like firing of real neurons to show that activity-dependent neural noise, combined with nonlinear neural responses, drives the emergence of solutions that reflect an accurate understanding of modular tasks, corresponding to acquisition of a correct world model. We find that noise-driven modularisation can be recapitulated by a deterministic regulariser that multiplicatively combines weights and activations, revealing rich phenomenology not captured in linear networks or by standard regularisation methods. Though the emergence of modular structure requires sufficiently many training samples (exponential in the number of modular task dimensions), we show that pre-modularised ANNs exhibit superior noise-robustness and the ability to generalise and extrapolate well beyond training data, compared to ANNs without such inductive biases. Together, our work demonstrates a regulariser and architectures that could encourage modularity emergence to yield functional benefits.

physics.bio-ph↗

arXiv2025

Fast dynamical similarity analysis

Understanding how nonlinear dynamical systems (e.g., artificial neural networks and neural circuits) process information requires comparing their underlying dynamics at scale, across diverse architectures and large neural recordings. While many similarity metrics exist, current approaches fall short for large-scale comparisons. Geometric methods are computationally efficient but fail to capture governing dynamics, limiting their accuracy. In contrast, traditional dynamical similarity methods are faithful to system dynamics but are often computationally prohibitive. We bridge this gap by combining the efficiency of geometric approaches with the fidelity of dynamical methods. We introduce fast dynamical similarity analysis (fastDSA), a computationally efficient and accurate metric for measuring (dis)similarity between nonlinear dynamical systems. FastDSA leverages modern computational tools, including random matrix theory to determine optimal system rank, novel optimization pipelines for aligning system flow fields, and Koopman embeddings. Across benchmark nonlinear systems and recurrent network models, fastDSA is robust to arbitrary coordinate choices while remaining sensitive to meaningful dynamical differences, capturing variations in system evolution that geometric methods may miss and traditional methods detect only at high computational cost. To our knowledge, fastDSA is the fastest method that retains accuracy in comparing nonlinear dynamical systems. It enables scalable, statistical analyses across diverse systems, significantly expanding the practical applicability of dynamical similarity analysis.

cs.AI↗

arXiv2025

InputDSA: Demixing then Comparing Recurrent and Externally Driven Dynamics

In control problems and basic scientific modeling, it is important to compare observations with dynamical simulations. For example, comparing two neural systems can shed light on the nature of emergent computations in the brain and deep neural networks. Recently, Ostrow et al. (2023) introduced Dynamical Similarity Analysis (DSA), a method to measure the similarity of two systems based on their recurrent dynamics rather than geometry or topology. However, DSA does not consider how inputs affect the dynamics, meaning that two similar systems, if driven differently, may be classified as different. Because real-world dynamical systems are rarely autonomous, it is important to account for the effects of input drive. To this end, we introduce a novel metric for comparing both intrinsic (recurrent) and input-driven dynamics, called InputDSA (iDSA). InputDSA extends the DSA framework by estimating and comparing both input and intrinsic dynamic operators using a variant of Dynamic Mode Decomposition with control (DMDc) based on subspace identification. We demonstrate that InputDSA can successfully compare partially observed, input-driven systems from noisy data. We show that when the true inputs are unknown, surrogate inputs can be substituted without a major deterioration in similarity estimates. We apply InputDSA on Recurrent Neural Networks (RNNs) trained with Deep Reinforcement Learning, identifying that high-performing networks are dynamically similar to one another, while low-performing networks are more diverse. Lastly, we apply InputDSA to neural data recorded from rats performing a cognitive task, demonstrating that it identifies a transition from input-driven evidence accumulation to intrinsically-driven decision-making. Our work demonstrates that InputDSA is a robust and efficient method for comparing intrinsic dynamics and the effect of external input on dynamical systems.

q-bio.NC↗

arXiv2025

Learn Globally, Speak Locally: Bridging the Gaps in Multilingual Reasoning

Large Language Models (LLMs) have achieved strong performance in domains like mathematics, factual question answering, and code generation, yet their ability to reason on these tasks in different languages remains underdeveloped. Especially for low-resource languages such as Swahili or Thai, LLMs can often misinterpret prompts or default to reasoning in English. This implicit bias toward high-resource languages undermines factual accuracy, interpretability, and trust. We propose M2A, a novel method that combines multi-scale multilingual alignment with language-consistency rewards on machine-translated questions, training models to reason directly and accurately in the target language. Furthermore, existing multilingual benchmarks only evaluate on final answers, overlooking whether reasoning occurs in the intended language. To close this gap, we introduce GeoFact-X, a geography-based multilingual factual reasoning benchmark together with reasoning traces in five languages: English, Hindi, Japanese, Swahili, and Thai. Our results show that M2A significantly enhances multilingual reasoning fidelity in both mathematical and factual reasoning tasks, highlighting that reasoning-aware multilingual reinforcement learning is crucial for robust cross-lingual generalization. https://jd730.github.io/projects/M2A_GeoFact-X

cs.CL↗

arXiv2025

Compositional Generalization via Forced Rendering of Disentangled Latents

Composition-the ability to generate myriad variations from finite means-is believed to underlie powerful generalization. However, compositional generalization remains a key challenge for deep learning. A widely held assumption is that learning disentangled (factorized) representations naturally supports this kind of extrapolation. Yet, empirical results are mixed, with many generative models failing to recognize and compose factors to generate out-of-distribution (OOD) samples. In this work, we investigate a controlled 2D Gaussian "bump" generation task with fully disentangled (x,y) inputs, demonstrating that standard generative architectures still fail in OOD regions when training with partial data, by re-entangling latent representations in subsequent layers. By examining the model's learned kernels and manifold geometry, we show that this failure reflects a "memorization" strategy for generation via data superposition rather than via composition of the true factorized features. We show that when models are forced-through architectural modifications with regularization or curated training data-to render the disentangled latents into the full-dimensional representational (pixel) space, they can be highly data-efficient and effective at composing in OOD regions. These findings underscore that disentangled latents in an abstract representation are insufficient and show that if models can represent disentangled factors directly in the output representational space, it can achieve robust compositional generalization.

cs.LG↗

arXiv2025

Key-value memory in the brain

Classical models of memory in psychology and neuroscience rely on similarity-based retrieval of stored patterns, where similarity is a function of retrieval cues and the stored patterns. While parsimonious, these models do not allow distinct representations for storage and retrieval, despite their distinct computational demands. Key-value memory systems, in contrast, distinguish representations used for storage (values) and those used for retrieval (keys). This allows key-value memory systems to optimize simultaneously for fidelity in storage and discriminability in retrieval. We review the computational foundations of key-value memory, its role in modern machine learning systems, related ideas from psychology and neuroscience, applications to a number of empirical puzzles, and possible biological implementations.

q-bio.NC↗

arXiv2024

Permutation Invariant Learning with High-Dimensional Particle Filters

Sequential learning in deep models often suffers from challenges such as catastrophic forgetting and loss of plasticity, largely due to the permutation dependence of gradient-based algorithms, where the order of training data impacts the learning outcome. In this work, we introduce a novel permutation-invariant learning framework based on high-dimensional particle filters. We theoretically demonstrate that particle filters are invariant to the sequential ordering of training minibatches or tasks, offering a principled solution to mitigate catastrophic forgetting and loss-of-plasticity. We develop an efficient particle filter for optimizing high-dimensional models, combining the strengths of Bayesian methods with gradient-based optimization. Through extensive experiments on continual supervised and reinforcement learning benchmarks, including SplitMNIST, SplitCIFAR100, and ProcGen, we empirically show that our method consistently improves performance, while reducing variance compared to standard baselines.

cs.LG↗

arXiv2024

Large Pre-Training Datasets Don't Always Guarantee Robustness after Fine-Tuning

Large-scale pretrained models are widely leveraged as foundations for learning new specialized tasks via fine-tuning, with the goal of maintaining the general performance of the model while allowing it to gain new skills. A valuable goal for all such models is robustness: the ability to perform well on out-of-distribution (OOD) tasks. We assess whether fine-tuning preserves the overall robustness of the pretrained model, and observed that models pretrained on large datasets exhibited strong catastrophic forgetting and loss of OOD generalization. To systematically assess robustness preservation in fine-tuned models, we propose the Robustness Inheritance Benchmark (ImageNet-RIB). The benchmark, which can be applied to any pretrained model, consists of a set of related but distinct OOD (downstream) tasks and involves fine-tuning on one of the OOD tasks in the set then testing on the rest. We find that though continual learning methods help, fine-tuning reduces robustness across pretrained models. Surprisingly, models pretrained on the largest and most diverse datasets (e.g., LAION-2B) exhibit both larger robustness losses and lower absolute robustness after fine-tuning on small datasets, relative to models pretrained on smaller datasets. These findings suggest that starting with the strongest foundation model is not necessarily the best approach for performance on specialist tasks. https://jd730.github.io/projects/ImageNet-RIB

cs.CV↗

arXiv2024

Fundamental performance bounds on time-series generation using reservoir computing

Reservoir computing (RC) harnesses the intrinsic dynamics of a chaotic system, called the reservoir, to perform various time-varying functions. An important use-case of RC is the generation of target temporal sequences via a trainable output-to-reservoir feedback loop. Despite the promise of RC in various domains, we lack a theory of performance bounds on RC systems. Here, we formulate an existence condition for a feedback loop that produces the target sequence. We next demonstrate that, given a sufficiently chaotic neural network reservoir, two separate factors are needed for successful training: global network stability of the target orbit, and the ability of the training algorithm to drive the system close enough to the target, which we term `reach'. By computing the training phase diagram over a range of target output amplitudes and periods, we verify that reach-limited failures depend on the training algorithm while stability-limited failures are invariant across different algorithms. We leverage dynamical mean field theory (DMFT) to provide an analytical amplitude-period bound on achievable outputs by RC networks and propose a way of enhancing algorithm reach via forgetting. The resulting mechanistic understanding of RC performance can guide the future design and deployment of reservoir networks.

nlin.CD↗

arXiv2024

Breaking Neural Network Scaling Laws with Modularity

Modular neural networks outperform nonmodular neural networks on tasks ranging from visual question answering to robotics. These performance improvements are thought to be due to modular networks' superior ability to model the compositional and combinatorial structure of real-world problems. However, a theoretical explanation of how modularity improves generalizability, and how to leverage task modularity while training networks remains elusive. Using recent theoretical progress in explaining neural network generalization, we investigate how the amount of training data required to generalize on a task varies with the intrinsic dimensionality of a task's input. We show theoretically that when applied to modularly structured tasks, while nonmodular networks require an exponential number of samples with task dimensionality, modular networks' sample complexity is independent of task dimensionality: modular networks can generalize in high dimensions. We then develop a novel learning rule for modular networks to exploit this advantage and empirically show the improved generalization of the rule, both in- and out-of-distribution, on high-dimensional, modular tasks.

cs.LG↗

arXiv2024

Unified Neural Network Scaling Laws and Scale-time Equivalence

As neural networks continue to grow in size but datasets might not, it is vital to understand how much performance improvement can be expected: is it more important to scale network size or data volume? Thus, neural network scaling laws, which characterize how test error varies with network size and data volume, have become increasingly important. However, existing scaling laws are often applicable only in limited regimes and often do not incorporate or predict well-known phenomena such as double descent. Here, we present a novel theoretical characterization of how three factors -- model size, training time, and data volume -- interact to determine the performance of deep neural networks. We first establish a theoretical and empirical equivalence between scaling the size of a neural network and increasing its training time proportionally. Scale-time equivalence challenges the current practice, wherein large models are trained for small durations, and suggests that smaller models trained over extended periods could match their efficacy. It also leads to a novel method for predicting the performance of large-scale networks from small-scale networks trained for extended epochs, and vice versa. We next combine scale-time equivalence with a linear model analysis of double descent to obtain a unified theoretical scaling law, which we confirm with experiments across vision benchmarks and network architectures. These laws explain several previously unexplained phenomena: reduced data requirements for generalization in larger models, heightened sensitivity to label noise in overparameterized models, and instances where increasing model scale does not necessarily enhance performance. Our findings hold significant implications for the practical deployment of neural networks, offering a more accessible and efficient path to training and fine-tuning large models.

cs.LG↗

arXiv2024

How Diffusion Models Learn to Factorize and Compose

Diffusion models are capable of generating photo-realistic images that combine elements which likely do not appear together in the training set, demonstrating the ability to \textit{compositionally generalize}. Nonetheless, the precise mechanism of compositionality and how it is acquired through training remains elusive. Inspired by cognitive neuroscientific approaches, we consider a highly reduced setting to examine whether and when diffusion models learn semantically meaningful and factorized representations of composable features. We performed extensive controlled experiments on conditional Denoising Diffusion Probabilistic Models (DDPMs) trained to generate various forms of 2D Gaussian bump images. We found that the models learn factorized but not fully continuous manifold representations for encoding continuous features of variation underlying the data. With such representations, models demonstrate superior feature compositionality but limited ability to interpolate over unseen values of a given feature. Our experimental results further demonstrate that diffusion models can attain compositionality with few compositional examples, suggesting a more efficient way to train DDPMs. Finally, we connect manifold formation in diffusion models to percolation theory in physics, offering insight into the sudden onset of factorized representation learning. Our thorough toy experiments thus contribute a deeper understanding of how diffusion models capture compositional structure in data.

cs.AI↗

arXiv2024

Towards Exact Computation of Inductive Bias

Much research in machine learning involves finding appropriate inductive biases (e.g. convolutional neural networks, momentum-based optimizers, transformers) to promote generalization on tasks. However, quantification of the amount of inductive bias associated with these architectures and hyperparameters has been limited. We propose a novel method for efficiently computing the inductive bias required for generalization on a task with a fixed training data budget; formally, this corresponds to the amount of information required to specify well-generalizing models within a specific hypothesis space of models. Our approach involves modeling the loss distribution of random hypotheses drawn from a hypothesis space to estimate the required inductive bias for a task relative to these hypotheses. Unlike prior work, our method provides a direct estimate of inductive bias without using bounds and is applicable to diverse hypothesis spaces. Moreover, we derive approximation error bounds for our estimation approach in terms of the number of sampled hypotheses. Consistent with prior results, our empirical results demonstrate that higher dimensional tasks require greater inductive bias. We show that relative to other expressive model classes, neural networks as a model class encode large amounts of inductive bias. Furthermore, our measure quantifies the relative difference in inductive bias between different neural network architectures. Our proposed inductive bias metric provides an information-theoretic interpretation of the benefits of specific model architectures for certain tasks and provides a quantitative guide to developing tasks requiring greater inductive bias, thereby encouraging the development of more powerful inductive biases.

cs.LG↗

arXiv2024

Delay Embedding Theory of Neural Sequence Models

To generate coherent responses, language models infer unobserved meaning from their input text sequence. One potential explanation for this capability arises from theories of delay embeddings in dynamical systems, which prove that unobserved variables can be recovered from the history of only a handful of observed variables. To test whether language models are effectively constructing delay embeddings, we measure the capacities of sequence models to reconstruct unobserved dynamics. We trained 1-layer transformer decoders and state-space sequence models on next-step prediction from noisy, partially-observed time series data. We found that each sequence layer can learn a viable embedding of the underlying system. However, state-space models have a stronger inductive bias than transformers-in particular, they more effectively reconstruct unobserved information at initialization, leading to more parameter-efficient models and lower error on dynamics tasks. Our work thus forges a novel connection between dynamical systems and deep learning sequence models via delay embedding theory.

cs.LG↗

arXiv2024

Resampling-free Particle Filters in High-dimensions

State estimation is crucial for the performance and safety of numerous robotic applications. Among the suite of estimation techniques, particle filters have been identified as a powerful solution due to their non-parametric nature. Yet, in high-dimensional state spaces, these filters face challenges such as 'particle deprivation' which hinders accurate representation of the true posterior distribution. This paper introduces a novel resampling-free particle filter designed to mitigate particle deprivation by forgoing the traditional resampling step. This ensures a broader and more diverse particle set, especially vital in high-dimensional scenarios. Theoretically, our proposed filter is shown to offer a near-accurate representation of the desired posterior distribution in high-dimensional contexts. Empirically, the effectiveness of our approach is underscored through a high-dimensional synthetic state estimation task and a 6D pose estimation derived from videos. We posit that as robotic systems evolve with greater degrees of freedom, particle filters tailored for high-dimensional state spaces will be indispensable.

cs.RO↗