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Ilia A. Solovyov

Publications and source records attributed to Ilia A. Solovyov.

3 recordsLinked to original sources

Tracking the Electron Transfer Cascade in European Robin Cryptochrome 4 Mutants

The primary step in the elusive ability of migratory birds to sense weak Earth-strength magnetic fields is supposedly the light-induced formation of a long-lived, magnetically sensitive radical pair inside a cryptochrome flavoprotein located in the retina of these birds. Blue light absorption by a flavin chromophore triggers a series of sequential electron transfer steps across a tetradic tryptophan chain towards the flavin acceptor. The recent ability to express cryptochrome 4 from the night-migratory European robin (Erithacus rubecula), ErCry4, and to replace the tryptophan residues individually by a redox-inactive phenylalanine offers the prospect of exploring the role of each of the tryptophan residues in the electron transfer chain. Here, we compare ultrafast transient absorption spectroscopy of wild type ErCry4 and four of its mutants having phenylalanine residues in different positions of the chain. In the mutants we observe that each of the first three tryptophan residues in the chain adds a distinct relaxation component (time constants 0.5, 30 and 150 ps) to the transient absorption data. The dynamics in the mutant with a terminal phenylalanine residue are very similar to those in wild type ErCry4, excepted for a reduced concentration of long-lived radical pairs. The experimental results are evaluated and discussed in connection with Marcus-Hopfield theory, providing a complete microscopic insight into the sequential electron transfers across the tryptophan chain. Our results offer a path to studying spin transport and dynamical spin correlations in flavoprotein radical pairs.

physics.chem-ph↗

Optical response of small magnesium clusters

We predict the strong enhancement in the photoabsorption of small Mg clusters in the region of 4-5 eV due to the resonant excitation of the plasmon oscillations of cluster electrons. The photoabsorption spectra for neutral Mg clusters consisting of up to N=11 atoms have been calculated using ab initio framework based on the time dependent density functional theory (TDDFT). The nature of predicted resonances has been elucidated by comparison of the results of the ab initio calculations with the results of the classical Mie theory. The splitting of the plasmon resonances caused by the cluster deformation is analysed. The reliability of the used calculation scheme has been proved by performing the test calculation for a number of sodium clusters and the comparison of the results obtained with the results of other methods and experiment.

physics.atm-clus↗

Fusion process of Lennard-Jones clusters: global minima and magic numbers formation

We present a new theoretical framework for modelling the fusion process of Lennard-Jones (LJ) clusters. Starting from the initial tetrahedral cluster configuration, adding new atoms to the system and absorbing its energy at each step, we find cluster growing paths up to the cluster sizes of up to 150 atoms. We demonstrate that in this way all known global minima structures of the LJ-clusters can be found. Our method provides an efficient tool for the calculation and analysis of atomic cluster structure. With its use we justify the magic number sequence for the clusters of noble gas atoms and compare it with experimental observations. We report the striking correspondence of the peaks in the dependence on cluster size of the second derivative of the binding energy per atom calculated for the chain of LJ-clusters based on the icosahedral symmetry with the peaks in the abundance mass spectra experimentally measured for the clusters of noble gas atoms. Our method serves an efficient alternative to the global optimization techniques based on the Monte-Carlo simulations and it can be applied for the solution of a broad variety of problems in which atomic cluster structure is important.

physics.atm-clus↗