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Ingo Scholtes

Publications and source records attributed to Ingo Scholtes.

54 records · Page 3Linked to original sources

Counting Causal Paths in Big Times Series Data on Networks

Graph or network representations are an important foundation for data mining and machine learning tasks in relational data. Many tools of network analysis, like centrality measures, information ranking, or cluster detection rest on the assumption that links capture direct influence, and that paths represent possible indirect influence. This assumption is invalidated in time-stamped network data capturing, e.g., dynamic social networks, biological sequences or financial transactions. In such data, for two time-stamped links (A,B) and (B,C) the chronological ordering and timing determines whether a causal path from node A via B to C exists. A number of works has shown that for that reason network analysis cannot be directly applied to time-stamped network data. Existing methods to address this issue require statistics on causal paths, which is computationally challenging for big data sets. Addressing this problem, we develop an efficient algorithm to count causal paths in time-stamped network data. Applying it to empirical data, we show that our method is more efficient than a baseline method implemented in an OpenSource data analytics package. Our method works efficiently for different values of the maximum time difference between consecutive links of a causal path and supports streaming scenarios. With it, we are closing a gap that hinders an efficient analysis of big time series data on complex networks.

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git2net - Mining Time-Stamped Co-Editing Networks from Large git Repositories

Data from software repositories have become an important foundation for the empirical study of software engineering processes. A recurring theme in the repository mining literature is the inference of developer networks capturing e.g. collaboration, coordination, or communication from the commit history of projects. Most of the studied networks are based on the co-authorship of software artefacts defined at the level of files, modules, or packages. While this approach has led to insights into the social aspects of software development, it neglects detailed information on code changes and code ownership, e.g. which exact lines of code have been authored by which developers, that is contained in the commit log of software projects. Addressing this issue, we introduce git2net, a scalable python software that facilitates the extraction of fine-grained co-editing networks in large git repositories. It uses text mining techniques to analyse the detailed history of textual modifications within files. This information allows us to construct directed, weighted, and time-stamped networks, where a link signifies that one developer has edited a block of source code originally written by another developer. Our tool is applied in case studies of an Open Source and a commercial software project. We argue that it opens up a massive new source of high-resolution data on human collaboration patterns.

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Understanding Complex Systems: From Networks to Optimal Higher-Order Models

To better understand the structure and function of complex systems, researchers often represent direct interactions between components in complex systems with networks, assuming that indirect influence between distant components can be modelled by paths. Such network models assume that actual paths are memoryless. That is, the way a path continues as it passes through a node does not depend on where it came from. Recent studies of data on actual paths in complex systems question this assumption and instead indicate that memory in paths does have considerable impact on central methods in network science. A growing research community working with so-called higher-order network models addresses this issue, seeking to take advantage of information that conventional network representations disregard. Here we summarise the progress in this area and outline remaining challenges calling for more research.

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From Relational Data to Graphs: Inferring Significant Links using Generalized Hypergeometric Ensembles

The inference of network topologies from relational data is an important problem in data analysis. Exemplary applications include the reconstruction of social ties from data on human interactions, the inference of gene co-expression networks from DNA microarray data, or the learning of semantic relationships based on co-occurrences of words in documents. Solving these problems requires techniques to infer significant links in noisy relational data. In this short paper, we propose a new statistical modeling framework to address this challenge. It builds on generalized hypergeometric ensembles, a class of generative stochastic models that give rise to analytically tractable probability spaces of directed, multi-edge graphs. We show how this framework can be used to assess the significance of links in noisy relational data. We illustrate our method in two data sets capturing spatio-temporal proximity relations between actors in a social system. The results show that our analytical framework provides a new approach to infer significant links from relational data, with interesting perspectives for the mining of data on social systems.

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When is a Network a Network? Multi-Order Graphical Model Selection in Pathways and Temporal Networks

We introduce a framework for the modeling of sequential data capturing pathways of varying lengths observed in a network. Such data are important, e.g., when studying click streams in information networks, travel patterns in transportation systems, information cascades in social networks, biological pathways or time-stamped social interactions. While it is common to apply graph analytics and network analysis to such data, recent works have shown that temporal correlations can invalidate the results of such methods. This raises a fundamental question: when is a network abstraction of sequential data justified? Addressing this open question, we propose a framework which combines Markov chains of multiple, higher orders into a multi-layer graphical model that captures temporal correlations in pathways at multiple length scales simultaneously. We develop a model selection technique to infer the optimal number of layers of such a model and show that it outperforms previously used Markov order detection techniques. An application to eight real-world data sets on pathways and temporal networks shows that it allows to infer graphical models which capture both topological and temporal characteristics of such data. Our work highlights fallacies of network abstractions and provides a principled answer to the open question when they are justified. Generalizing network representations to multi-order graphical models, it opens perspectives for new data mining and knowledge discovery algorithms.

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Generalized Hypergeometric Ensembles: Statistical Hypothesis Testing in Complex Networks

Statistical ensembles of networks, i.e., probability spaces of all networks that are consistent with given aggregate statistics, have become instrumental in the analysis of complex networks. Their numerical and analytical study provides the foundation for the inference of topological patterns, the definition of network-analytic measures, as well as for model selection and statistical hypothesis testing. Contributing to the foundation of these data analysis techniques, in this Letter we introduce generalized hypergeometric ensembles, a broad class of analytically tractable statistical ensembles of finite, directed and weighted networks. This framework can be interpreted as a generalization of the classical configuration model, which is commonly used to randomly generate networks with a given degree sequence or distribution. Our generalization rests on the introduction of dyadic link propensities, which capture the degree-corrected tendencies of pairs of nodes to form edges between each other. Studying empirical and synthetic data, we show that our approach provides broad perspectives for model selection and statistical hypothesis testing in data on complex networks.

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Causality-Driven Slow-Down and Speed-Up of Diffusion in Non-Markovian Temporal Networks

Recent research has highlighted limitations of studying complex systems with time-varying topologies from the perspective of static, time-aggregated networks. Non-Markovian characteristics resulting from the ordering of interactions in temporal networks were identified as one important mechanism that alters causality, and affects dynamical processes. So far, an analytical explanation for this phenomenon and for the significant variations observed across different systems is missing. Here we introduce a methodology that allows to analytically predict causality-driven changes of diffusion speed in non-Markovian temporal networks. Validating our predictions in six data sets, we show that - compared to the time-aggregated network - non-Markovian characteristics can lead to both a slow-down, or speed-up of diffusion which can even outweigh the decelerating effect of community structures in the static topology. Thus, non-Markovian properties of temporal networks constitute an important additional dimension of complexity in time-varying complex systems.

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Higher-Order Aggregate Networks in the Analysis of Temporal Networks: Path structures and centralities

Recent research on temporal networks has highlighted the limitations of a static network perspective for our understanding of complex systems with dynamic topologies. In particular, recent works have shown that i) the specific order in which links occur in real-world temporal networks affects causality structures and thus the evolution of dynamical processes, and ii) higher-order aggregate representations of temporal networks can be used to analytically study the effect of these order correlations on dynamical processes. In this article we analyze the effect of order correlations on path-based centrality measures in real-world temporal networks. Analyzing temporal equivalents of betweenness, closeness and reach centrality in six empirical temporal networks, we first show that an analysis of the commonly used static, time-aggregated representation can give misleading results about the actual importance of nodes. We further study higher-order time-aggregated networks, a recently proposed generalization of the commonly applied static, time-aggregated representation of temporal networks. Here, we particularly define path-based centrality measures based on second-order aggregate networks, empirically validating that node centralities calculated in this way better capture the true temporal centralities of nodes than node centralities calculated based on the commonly used static (first-order) representation. Apart from providing a simple and practical method for the approximation of path-based centralities in temporal networks, our results highlight interesting perspectives for the use of higher-order aggregate networks in the analysis of time-stamped network data.

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An ensemble perspective on multi-layer networks

We study properties of multi-layered, interconnected networks from an ensemble perspective, i.e. we analyze ensembles of multi-layer networks that share similar aggregate characteristics. Using a diffusive process that evolves on a multi-layer network, we analyze how the speed of diffusion depends on the aggregate characteristics of both intra- and inter-layer connectivity. Through a block-matrix model representing the distinct layers, we construct transition matrices of random walkers on multi-layer networks, and estimate expected properties of multi-layer networks using a mean-field approach. In addition, we quantify and explore conditions on the link topology that allow to estimate the ensemble average by only considering aggregate statistics of the layers. Our approach can be used when only partial information is available, like it is usually the case for real-world multi-layer complex systems.

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Predicting Scientific Success Based on Coauthorship Networks

We address the question to what extent the success of scientific articles is due to social influence. Analyzing a data set of over 100000 publications from the field of Computer Science, we study how centrality in the coauthorship network differs between authors who have highly cited papers and those who do not. We further show that a machine learning classifier, based only on coauthorship network centrality measures at time of publication, is able to predict with high precision whether an article will be highly cited five years after publication. By this we provide quantitative insight into the social dimension of scientific publishing - challenging the perception of citations as an objective, socially unbiased measure of scientific success.

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Betweenness Preference: Quantifying Correlations in the Topological Dynamics of Temporal Networks

We study correlations in temporal networks and introduce the notion of betweenness preference. It allows to quantify to what extent paths, existing in time-aggregated representations of temporal networks, are actually realizable based on the sequence of interactions. We show that betweenness preference is present in empirical temporal network data and that it influences the length of shortest time-respecting paths. Using four different data sets, we further argue that neglecting betweenness preference leads to wrong conclusions about dynamical processes on temporal networks.

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A Quantitative Study of Social Organisation in Open Source Software Communities

The success of open source projects crucially depends on the voluntary contributions of a sufficiently large community of users. Apart from the mere size of the community, interesting questions arise when looking at the evolution of structural features of collaborations between community members. In this article, we discuss several network analytic proxies that can be used to quantify different aspects of the social organisation in social collaboration networks. We particularly focus on measures that can be related to the cohesiveness of the communities, the distribution of responsibilities and the resilience against turnover of community members. We present a comparative analysis on a large-scale dataset that covers the full history of collaborations between users of 14 major open source software communities. Our analysis covers both aggregate and time-evolving measures and highlights differences in the social organisation across communities. We argue that our results are a promising step towards the definition of suitable, potentially multi-dimensional, resilience and risk indicators for open source software communities.

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Categorizing Bugs with Social Networks: A Case Study on Four Open Source Software Communities

Efficient bug triaging procedures are an important precondition for successful collaborative software engineering projects. Triaging bugs can become a laborious task particularly in open source software (OSS) projects with a large base of comparably inexperienced part-time contributors. In this paper, we propose an efficient and practical method to identify valid bug reports which a) refer to an actual software bug, b) are not duplicates and c) contain enough information to be processed right away. Our classification is based on nine measures to quantify the social embeddedness of bug reporters in the collaboration network. We demonstrate its applicability in a case study, using a comprehensive data set of more than 700,000 bug reports obtained from the Bugzilla installation of four major OSS communities, for a period of more than ten years. For those projects that exhibit the lowest fraction of valid bug reports, we find that the bug reporters' position in the collaboration network is a strong indicator for the quality of bug reports. Based on this finding, we develop an automated classification scheme that can easily be integrated into bug tracking platforms and analyze its performance in the considered OSS communities. A support vector machine (SVM) to identify valid bug reports based on the nine measures yields a precision of up to 90.3% with an associated recall of 38.9%. With this, we significantly improve the results obtained in previous case studies for an automated early identification of bugs that are eventually fixed. Furthermore, our study highlights the potential of using quantitative measures of social organization in collaborative software engineering. It also opens a broad perspective for the integration of social awareness in the design of support infrastructures.

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The Rise and Fall of a Central Contributor: Dynamics of Social Organization and Performance in the Gentoo Community

Social organization and division of labor crucially influence the performance of collaborative software engineering efforts. In this paper, we provide a quantitative analysis of the relation between social organization and performance in Gentoo, an Open Source community developing a Linux distribution. We study the structure and dynamics of collaborations as recorded in the project's bug tracking system over a period of ten years. We identify a period of increasing centralization after which most interactions in the community were mediated by a single central contributor. In this period of maximum centralization, the central contributor unexpectedly left the project, thus posing a significant challenge for the community. We quantify how the rise, the activity as well as the subsequent sudden dropout of this central contributor affected both the social organization and the bug handling performance of the Gentoo community. We analyze social organization from the perspective of network theory and augment our quantitative findings by interviews with prominent members of the Gentoo community which shared their personal insights.

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Hierarchical Consensus Formation Reduces the Influence of Opinion Bias

We study the role of hierarchical structures in a simple model of collective consensus formation based on the bounded confidence model with continuous individual opinions. For the particular variation of this model considered in this paper, we assume that a bias towards an extreme opinion is introduced whenever two individuals interact and form a common decision. As a simple proxy for hierarchical social structures, we introduce a two-step decision making process in which in the second step groups of like-minded individuals are replaced by representatives once they have reached local consensus, and the representatives in turn form a collective decision in a downstream process. We find that the introduction of such a hierarchical decision making structure can improve consensus formation, in the sense that the eventual collective opinion is closer to the true average of individual opinions than without it. In particular, we numerically study how the size of groups of like-minded individuals being represented by delegate individuals affects the impact of the bias on the final population-wide consensus. These results are of interest for the design of organisational policies and the optimisation of hierarchical structures in the context of group decision making.

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A Tunable Mechanism for Identifying Trusted Nodes in Large Scale Distributed Networks

In this paper, we propose a simple randomized protocol for identifying trusted nodes based on personalized trust in large scale distributed networks. The problem of identifying trusted nodes, based on personalized trust, in a large network setting stems from the huge computation and message overhead involved in exhaustively calculating and propagating the trust estimates by the remote nodes. However, in any practical scenario, nodes generally communicate with a small subset of nodes and thus exhaustively estimating the trust of all the nodes can lead to huge resource consumption. In contrast, our mechanism can be tuned to locate a desired subset of trusted nodes, based on the allowable overhead, with respect to a particular user. The mechanism is based on a simple exchange of random walk messages and nodes counting the number of times they are being hit by random walkers of nodes in their neighborhood. Simulation results to analyze the effectiveness of the algorithm show that using the proposed algorithm, nodes identify the top trusted nodes in the network with a very high probability by exploring only around 45% of the total nodes, and in turn generates nearly 90% less overhead as compared to an exhaustive trust estimation mechanism, named TrustWebRank. Finally, we provide a measure of the global trustworthiness of a node; simulation results indicate that the measures generated using our mechanism differ by only around 0.6% as compared to TrustWebRank.

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Organic Design of Massively Distributed Systems: A Complex Networks Perspective

The vision of Organic Computing addresses challenges that arise in the design of future information systems that are comprised of numerous, heterogeneous, resource-constrained and error-prone components or devices. Here, the notion organic particularly highlights the idea that, in order to be manageable, such systems should exhibit self-organization, self-adaptation and self-healing characteristics similar to those of biological systems. In recent years, the principles underlying many of the interesting characteristics of natural systems have been investigated from the perspective of complex systems science, particularly using the conceptual framework of statistical physics and statistical mechanics. In this article, we review some of the interesting relations between statistical physics and networked systems and discuss applications in the engineering of organic networked computing systems with predictable, quantifiable and controllable self-* properties.

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Distributed Creation and Adaptation of Random Scale-Free Overlay Networks

Random scale-free overlay topologies provide a number of properties like for example high resilience against failures of random nodes, small (average) diameter as well as good expansion and congestion characteristics that make them interesting for the use in large-scale distributed systems. A number of these properties have been shown to be influenced by the exponent γof their degree distribution P(k) ~ k^{-γ}. In this article, we present a distributed rewiring scheme that is suitable to effectuate scale-free overlay topologies with an adjustable exponent. The scheme uses a biased random walk strategy to sample new endpoints of edges being rewired and relies on a simple equilibrium model for scale-free networks. The bias of the random walk strategy can be tuned to produce random scale-free networks with arbitrary degree distribution exponents greater than two. We argue that the rewiring strategy can be implemented in a distributed fashion based on a node's information about its immediate neighbors. We present both analytical arguments as well as results that have been obtained using an implementation of the proposed protocol.

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