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Irène Kaltenmark

Publications and source records attributed to Irène Kaltenmark.

3 recordsLinked to original sources

A Varifold-Based Score for Decoupling Deformations in Shape Analysis

In computational anatomy, analyzing morphological variability across shape populations often requires multi-component deformation models that combine structured motions and unconstrained diffeomorphisms. However, a major challenge arises during the registration process, as high-dimensional deformations tend to absorb lower-dimensional components, altering the true geometric variability and preventing accurate statistical analysis. To address this issue, we introduce a novel coupling score designed to decouple distinct deformation modes during registration. This score is defined using first variation of varifolds which is a varifold representation of the infinitesimal action of vector fields on shapes. The proposed score quantifies the extent to which the action of a given vector field on a shape can be replicated by another subspace of vector fields. We provide a theoretical analysis of this coupling score, illustrating its behavior on finite-dimensional spaces. Finally, we integrate this score as a penalization term in registration problems. Numerical experiments illustrate its efficiency in various use cases such as enforcing or preventing specific motions, and iteratively correcting complex matching scenarios by enforcing structured directional priors.

math.DG↗

How to Register a Live onto a Liver ? Partial Matching in the Space of Varifolds

Partial shapes correspondences is a problem that often occurs in computer vision (occlusion, evolution in time...). In medical imaging, data may come from different modalities and be acquired under different conditions which leads to variations in shapes and topologies. In this paper we use an asymmetric data dissimilarity term applicable to various geometric shapes like sets of curves or surfaces, assessing the embedding of a shape into another one without relying on correspondences. It is designed as a data attachment for the Large Deformation Diffeomorphic Metric Mapping (LDDMM) framework, allowing to compute a meaningful deformation of one shape onto a subset of the other. We refine it in order to control the resulting non-rigid deformations and provide consistent deformations of the shapes along with their ambient space. We show that partial matching can be used for robust multi-modal liver registration between a Computed Tomography (CT) volume and a Cone Beam Computed Tomography (CBCT) volume. The 3D imaging of the patient CBCT at point of care that we call live is truncated while the CT pre-intervention provides a full visualization of the liver. The proposed method allows the truncated surfaces from CBCT to be aligned non-rigidly, yet realistically, with surfaces from CT with an average distance of 2.6mm(+/- 2.2). The generated deformations extend consistently to the liver volume, and are evaluated on points of interest for the physicians, with an average distance of 5.8mm (+/- 2.7) for vessels bifurcations and 5.13mm (+/- 2.5) for tumors landmarks. Such multi-modality volumes registrations would help the physicians in the perspective of navigating their tools in the patient's anatomy to locate structures that are hardly visible in the CBCT used during their procedures. Our code is available at https://github.com/plantonsanti/PartialMatchingVarifolds.

eess.IV↗

Partial Matching in the Space of Varifolds

In computer vision and medical imaging, the problem of matching structures finds numerous applications from automatic annotation to data reconstruction. The data however, while corresponding to the same anatomy, are often very different in topology or shape and might only partially match each other. We introduce a new asymmetric data dissimilarity term for various geometric shapes like sets of curves or surfaces. This term is based on the Varifold shape representation and assesses the embedding of a shape into another one without relying on correspondences between points. It is designed as data attachment for the Large Deformation Diffeomorphic Metric Mapping (LDDMM) framework, allowing to compute meaningful deformation of one shape onto a subset of the other. Registrations are illustrated on sets of synthetic 3D curves, real vascular trees and livers' surfaces from two different modalities: Computed Tomography (CT) and Cone Beam Computed Tomography (CBCT). All experiments show that this data dissimilarity term leads to coherent partial matching despite the topological differences.

cs.CV↗