arXiv subjects

Irem Boybat

Publications and source records attributed to Irem Boybat.

At least 19 recordsLinked to original sources

arXiv2026

On Design Principles for Efficient Heterogeneous DRAM-PIM-GPU Systems

Heterogeneous DRAM-based processing-in-memory (PIM)-GPU systems promise significant efficiency gains for decode-phase large language model (LLM) inference, particularly in long-output generation, yet current design practices overlook critical factors that determine real-world performance. Through systematic evaluation of diverse architectures and workloads (OPT-7B/70B, Mamba2-2.7B/70B), we reveal three fundamental design principles: (i) static power consumption (DRAM leakage, refresh, and GPU idle power) can dominate the efficiency calculus, causing dynamic-only models to overestimate tokens/s/W by up to 3.85X for realistic deployments (Mamba2-2.7B, batch size 1, 128 input tokens, and 2,048 output tokens); (ii) decoding performance is monotonically non-decreasing with channel count across all evaluated models and workloads, generally plateauing at high channel counts for low-batch workloads; under a fixed-capacity sweep, all models instead share a common near-optimal hierarchy configuration, with substantially larger misconfiguration penalties for attention-based models; (iii) workload mapping strategies provide bounded improvements (up to 14.0%/17.4% kernel-level latency/energy reduction, up to 5.6% end-to-end gain) and are not primary bottlenecks. Significant efficiency gains require system-wide co-optimization. These principles provide design-space guidance for architects designing the next generation of memory-accelerated LLM systems.

cs.AR↗

arXiv2025

Processing-in-memory for genomics workloads

Low-cost, high-throughput DNA and RNA sequencing (HTS) data is the backbone of the life sciences. Genome sequencing is now becoming a part of Predictive, Preventive, Personalized, and Participatory (termed 'P4') medicine. All genomic data are currently processed in energy-hungry computer clusters and centers, necessitating data transfer, consuming substantial energy, and wasting valuable time. Therefore, there is a need for fast, energy-efficient, and cost-efficient technologies that enable genomics research without requiring data centers and cloud platforms. We recently launched the BioPIM Project to leverage emerging processing-in-memory (PIM) technologies to enable energy- and cost-efficient analysis of bioinformatics workloads. The BioPIM Project focuses on co-designing algorithms and data structures commonly used in genomics with several PIM architectures to achieve the highest cost, energy, and time savings.

q-bio.GN↗

arXiv2025

Enhancing Downstream Analysis in Genome Sequencing: Species Classification While Basecalling

The ability to quickly and accurately identify microbial species in a sample, known as metagenomic profiling, is critical across various fields, from healthcare to environmental science. This paper introduces a novel method to profile signals coming from sequencing devices in parallel with determining their nucleotide sequences, a process known as basecalling, via a multi-objective deep neural network for simultaneous basecalling and multi-class genome classification. We introduce a new loss strategy where losses for basecalling and classification are back-propagated separately, with model weights combined for the shared layers, and a pre-configured ranking strategy allowing top-K species accuracy, giving users flexibility to choose between higher accuracy or higher speed at identifying the species. We achieve state-of-the-art basecalling accuracies, while classification accuracies meet and exceed the results of state-of-the-art binary classifiers, attaining an average of 92.5%/98.9% accuracy at identifying the top-1/3 species among a total of 17 genomes in the Wick bacterial dataset. The work presented here has implications for future studies in metagenomic profiling by accelerating the bottleneck step of matching the DNA sequence to the correct genome.

q-bio.GN↗

arXiv2025

CiMBA: Accelerating Genome Sequencing through On-Device Basecalling via Compute-in-Memory

As genome sequencing is finding utility in a wide variety of domains beyond the confines of traditional medical settings, its computational pipeline faces two significant challenges. First, the creation of up to 0.5 GB of data per minute imposes substantial communication and storage overheads. Second, the sequencing pipeline is bottlenecked at the basecalling step, consuming >40% of genome analysis time. A range of proposals have attempted to address these challenges, with limited success. We propose to address these challenges with a Compute-in-Memory Basecalling Accelerator (CiMBA), the first embedded ($\sim25$mm$^2$) accelerator capable of real-time, on-device basecalling, coupled with AnaLog (AL)-Dorado, a new family of analog focused basecalling DNNs. Our resulting hardware/software co-design greatly reduces data communication overhead, is capable of a throughput of 4.77 million bases per second, 24x that required for real-time operation, and achieves 17x/27x power/area efficiency over the best prior basecalling embedded accelerator while maintaining a high accuracy comparable to state-of-the-art software basecallers.

cs.AR↗

arXiv2024

Efficient transformer adaptation for analog in-memory computing via low-rank adapters

Analog In-Memory Computing (AIMC) offers a promising solution to the von Neumann bottleneck. However, deploying transformer models on AIMC remains challenging due to their inherent need for flexibility and adaptability across diverse tasks. For the benefits of AIMC to be fully realized, weights of static vector-matrix multiplications must be mapped and programmed to analog devices in a weight-stationary manner. This poses two challenges for adapting a base network to hardware and downstream tasks: (i) conventional analog hardware-aware (AHWA) training requires retraining the entire model, and (ii) reprogramming analog devices is both time- and energy-intensive. To address these issues, we propose Analog Hardware-Aware Low-Rank Adaptation (AHWA-LoRA) training, a novel approach for efficiently adapting transformers to AIMC hardware. AHWA-LoRA training keeps the analog weights fixed as meta-weights and introduces lightweight external LoRA modules for both hardware and task adaptation. We validate AHWA-LoRA training on SQuAD v1.1 and the GLUE benchmark, demonstrate its scalability to larger models, and show its effectiveness in instruction tuning and reinforcement learning. We further evaluate a practical deployment scenario that balances AIMC tile latency with digital LoRA processing using optimized pipeline strategies, with RISC-V-based programmable multi-core accelerators. This hybrid architecture achieves efficient transformer inference with only a 4% per-layer overhead compared to a fully AIMC implementation.

cs.AR↗

arXiv2024

A Precision-Optimized Fixed-Point Near-Memory Digital Processing Unit for Analog In-Memory Computing

Analog In-Memory Computing (AIMC) is an emerging technology for fast and energy-efficient Deep Learning (DL) inference. However, a certain amount of digital post-processing is required to deal with circuit mismatches and non-idealities associated with the memory devices. Efficient near-memory digital logic is critical to retain the high area/energy efficiency and low latency of AIMC. Existing systems adopt Floating Point 16 (FP16) arithmetic with limited parallelization capability and high latency. To overcome these limitations, we propose a Near-Memory digital Processing Unit (NMPU) based on fixed-point arithmetic. It achieves competitive accuracy and higher computing throughput than previous approaches while minimizing the area overhead. Moreover, the NMPU supports standard DL activation steps, such as ReLU and Batch Normalization. We perform a physical implementation of the NMPU design in a 14 nm CMOS technology and provide detailed performance, power, and area assessments. We validate the efficacy of the NMPU by using data from an AIMC chip and demonstrate that a simulated AIMC system with the proposed NMPU outperforms existing FP16-based implementations, providing 139$\times$ speed-up, 7.8$\times$ smaller area, and a competitive power consumption. Additionally, our approach achieves an inference accuracy of 86.65 %/65.06 %, with an accuracy drop of just 0.12 %/0.4 % compared to the FP16 baseline when benchmarked with ResNet9/ResNet32 networks trained on the CIFAR10/CIFAR100 datasets, respectively.

cs.AR↗

arXiv2024

LionHeart: A Layer-based Mapping Framework for Heterogeneous Systems with Analog In-Memory Computing Tiles

When arranged in a crossbar configuration, resistive memory devices can be used to execute Matrix-Vector Multiplications (MVMs), the most dominant operation of many Machine Learning (ML) algorithms, in constant time complexity. Nonetheless, when performing computations in the analog domain, novel challenges are introduced in terms of arithmetic precision and stochasticity, due to non-ideal circuit and device behaviour. Moreover, these non-idealities have a temporal dimension, resulting in a degrading application accuracy over time. Facing these challenges, we propose a novel framework, named LionHeart, to obtain hybrid analog-digital mappings to execute Deep Learning (DL) inference workloads using heterogeneous accelerators. The accuracy-constrained mappings derived by LionHeart showcase, across different Convolutional Neural Networks (CNNs) and one transformer-based network, high accuracy and potential for speedup. The results of the full system simulations highlight run-time reductions and energy efficiency gains that exceed 6X, with a user-defined accuracy threshold for a fully digital floating point implementation. LionHeart is open-sourced here: https://github.com/IBM/lionheart.

cs.ET↗

arXiv2023

AnalogNAS: A Neural Network Design Framework for Accurate Inference with Analog In-Memory Computing

The advancement of Deep Learning (DL) is driven by efficient Deep Neural Network (DNN) design and new hardware accelerators. Current DNN design is primarily tailored for general-purpose use and deployment on commercially viable platforms. Inference at the edge requires low latency, compact and power-efficient models, and must be cost-effective. Digital processors based on typical von Neumann architectures are not conducive to edge AI given the large amounts of required data movement in and out of memory. Conversely, analog/mixed signal in-memory computing hardware accelerators can easily transcend the memory wall of von Neuman architectures when accelerating inference workloads. They offer increased area and power efficiency, which are paramount in edge resource-constrained environments. In this paper, we propose AnalogNAS, a framework for automated DNN design targeting deployment on analog In-Memory Computing (IMC) inference accelerators. We conduct extensive hardware simulations to demonstrate the performance of AnalogNAS on State-Of-The-Art (SOTA) models in terms of accuracy and deployment efficiency on various Tiny Machine Learning (TinyML) tasks. We also present experimental results that show AnalogNAS models achieving higher accuracy than SOTA models when implemented on a 64-core IMC chip based on Phase Change Memory (PCM). The AnalogNAS search code is released: https://github.com/IBM/analog-nas

cs.AR↗

arXiv2022

ALPINE: Analog In-Memory Acceleration with Tight Processor Integration for Deep Learning

Analog in-memory computing (AIMC) cores offers significant performance and energy benefits for neural network inference with respect to digital logic (e.g., CPUs). AIMCs accelerate matrix-vector multiplications, which dominate these applications' run-time. However, AIMC-centric platforms lack the flexibility of general-purpose systems, as they often have hard-coded data flows and can only support a limited set of processing functions. With the goal of bridging this gap in flexibility, we present a novel system architecture that tightly integrates analog in-memory computing accelerators into multi-core CPUs in general-purpose systems. We developed a powerful gem5-based full system-level simulation framework into the gem5-X simulator, ALPINE, which enables an in-depth characterization of the proposed architecture. ALPINE allows the simulation of the entire computer architecture stack from major hardware components to their interactions with the Linux OS. Within ALPINE, we have defined a custom ISA extension and a software library to facilitate the deployment of inference models. We showcase and analyze a variety of mappings of different neural network types, and demonstrate up to 20.5x/20.8x performance/energy gains with respect to a SIMD-enabled ARM CPU implementation for convolutional neural networks, multi-layer perceptrons, and recurrent neural networks.

cs.AR↗

arXiv2022

End-to-End DNN Inference on a Massively Parallel Analog In Memory Computing Architecture

The demand for computation resources and energy efficiency of Convolutional Neural Networks (CNN) applications requires a new paradigm to overcome the "Memory Wall". Analog In-Memory Computing (AIMC) is a promising paradigm since it performs matrix-vector multiplications, the critical kernel of many ML applications, in-place in the analog domain within memory arrays structured as crossbars of memory cells. However, several factors limit the full exploitation of this technology, including the physical fabrication of the crossbar devices, which constrain the memory capacity of a single array. Multi-AIMC architectures have been proposed to overcome this limitation, but they have been demonstrated only for tiny and custom CNNs or performing some layers off-chip. In this work, we present the full inference of an end-to-end ResNet-18 DNN on a 512-cluster heterogeneous architecture coupling a mix of AIMC cores and digital RISC-V cores, achieving up to 20.2 TOPS. Moreover, we analyze the mapping of the network on the available non-volatile cells, compare it with state-of-the-art models, and derive guidelines for next-generation many-core architectures based on AIMC devices.

cs.DC↗

arXiv2022

Benchmarking energy consumption and latency for neuromorphic computing in condensed matter and particle physics

The massive use of artificial neural networks (ANNs), increasingly popular in many areas of scientific computing, rapidly increases the energy consumption of modern high-performance computing systems. An appealing and possibly more sustainable alternative is provided by novel neuromorphic paradigms, which directly implement ANNs in hardware. However, little is known about the actual benefits of running ANNs on neuromorphic hardware for use cases in scientific computing. Here we present a methodology for measuring the energy cost and compute time for inference tasks with ANNs on conventional hardware. In addition, we have designed an architecture for these tasks and estimate the same metrics based on a state-of-the-art analog in-memory computing (AIMC) platform, one of the key paradigms in neuromorphic computing. Both methodologies are compared for a use case in quantum many-body physics in two dimensional condensed matter systems and for anomaly detection at 40 MHz rates at the Large Hadron Collider in particle physics. We find that AIMC can achieve up to one order of magnitude shorter computation times than conventional hardware, at an energy cost that is up to three orders of magnitude smaller. This suggests great potential for faster and more sustainable scientific computing with neuromorphic hardware.

cs.ET↗

arXiv2022

Scale up your In-Memory Accelerator: Leveraging Wireless-on-Chip Communication for AIMC-based CNN Inference

Analog In-Memory Computing (AIMC) is emerging as a disruptive paradigm for heterogeneous computing, potentially delivering orders of magnitude better peak performance and efficiency over traditional digital signal processing architectures on Matrix-Vector multiplication. However, to sustain this throughput in real-world applications, AIMC tiles must be supplied with data at very high bandwidth and low latency; this poses an unprecedented pressure on the on-chip communication infrastructure, which becomes the system's performance and efficiency bottleneck. In this context, the performance and plasticity of emerging on-chip wireless communication paradigms provide the required breakthrough to up-scale on-chip communication in large AIMC devices. This work presents a many-tile AIMC architecture with inter-tile wireless communication that integrates multiple heterogeneous computing clusters, embedding a mix of parallel RISC-V cores and AIMC tiles. We perform an extensive design space exploration of the proposed architecture and discuss the benefits of exploiting emerging on-chip communication technologies such as wireless transceivers in the millimeter-wave and terahertz bands.

cs.AR↗

arXiv2022

A Heterogeneous In-Memory Computing Cluster For Flexible End-to-End Inference of Real-World Deep Neural Networks

Deployment of modern TinyML tasks on small battery-constrained IoT devices requires high computational energy efficiency. Analog In-Memory Computing (IMC) using non-volatile memory (NVM) promises major efficiency improvements in deep neural network (DNN) inference and serves as on-chip memory storage for DNN weights. However, IMC's functional flexibility limitations and their impact on performance, energy, and area efficiency are not yet fully understood at the system level. To target practical end-to-end IoT applications, IMC arrays must be enclosed in heterogeneous programmable systems, introducing new system-level challenges which we aim at addressing in this work. We present a heterogeneous tightly-coupled clustered architecture integrating 8 RISC-V cores, an in-memory computing accelerator (IMA), and digital accelerators. We benchmark the system on a highly heterogeneous workload such as the Bottleneck layer from a MobileNetV2, showing 11.5x performance and 9.5x energy efficiency improvements, compared to highly optimized parallel execution on the cores. Furthermore, we explore the requirements for end-to-end inference of a full mobile-grade DNN (MobileNetV2) in terms of IMC array resources, by scaling up our heterogeneous architecture to a multi-array accelerator. Our results show that our solution, on the end-to-end inference of the MobileNetV2, is one order of magnitude better in terms of execution latency than existing programmable architectures and two orders of magnitude better than state-of-the-art heterogeneous solutions integrating in-memory computing analog cores.

cs.AR↗

arXiv2021

AnalogNets: ML-HW Co-Design of Noise-robust TinyML Models and Always-On Analog Compute-in-Memory Accelerator

Always-on TinyML perception tasks in IoT applications require very high energy efficiency. Analog compute-in-memory (CiM) using non-volatile memory (NVM) promises high efficiency and also provides self-contained on-chip model storage. However, analog CiM introduces new practical considerations, including conductance drift, read/write noise, fixed analog-to-digital (ADC) converter gain, etc. These additional constraints must be addressed to achieve models that can be deployed on analog CiM with acceptable accuracy loss. This work describes $\textit{AnalogNets}$: TinyML models for the popular always-on applications of keyword spotting (KWS) and visual wake words (VWW). The model architectures are specifically designed for analog CiM, and we detail a comprehensive training methodology, to retain accuracy in the face of analog non-idealities, and low-precision data converters at inference time. We also describe AON-CiM, a programmable, minimal-area phase-change memory (PCM) analog CiM accelerator, with a novel layer-serial approach to remove the cost of complex interconnects associated with a fully-pipelined design. We evaluate the AnalogNets on a calibrated simulator, as well as real hardware, and find that accuracy degradation is limited to 0.8$\%$/1.2$\%$ after 24 hours of PCM drift (8-bit) for KWS/VWW. AnalogNets running on the 14nm AON-CiM accelerator demonstrate 8.58/4.37 TOPS/W for KWS/VWW workloads using 8-bit activations, respectively, and increasing to 57.39/25.69 TOPS/W with $4$-bit activations.

cs.AR↗

arXiv2021

End-to-end 100-TOPS/W Inference With Analog In-Memory Computing: Are We There Yet?

In-Memory Acceleration (IMA) promises major efficiency improvements in deep neural network (DNN) inference, but challenges remain in the integration of IMA within a digital system. We propose a heterogeneous architecture coupling 8 RISC-V cores with an IMA in a shared-memory cluster, analyzing the benefits and trade-offs of in-memory computing on the realistic use case of a MobileNetV2 bottleneck layer. We explore several IMA integration strategies, analyzing performance, area, and energy efficiency. We show that while pointwise layers achieve significant speed-ups over software implementation, on depthwise layer the inability to efficiently map parameters on the accelerator leads to a significant trade-off between throughput and area. We propose a hybrid solution where pointwise convolutions are executed on IMA while depthwise on the cluster cores, achieving a speed-up of 3x over SW execution while saving 50% of area when compared to an all-in IMA solution with similar performance.

cs.AR↗

arXiv2020

Graphene-based Wireless Agile Interconnects for Massive Heterogeneous Multi-chip Processors

The main design principles in computer architecture have recently shifted from a monolithic scaling-driven approach to the development of heterogeneous architectures that tightly co-integrate multiple specialized processor and memory chiplets. In such data-hungry multi-chip architectures, current Networks-in-Package (NiPs) may not be enough to cater to their heterogeneous and fast-changing communication demands. This position paper makes the case for wireless in-package nanonetworking as the enabler of efficient and versatile wired-wireless interconnect fabrics for massive heterogeneous processors. To that end, the use of graphene-based antennas and transceivers with unique frequency-beam reconfigurability in the terahertz band is proposed. The feasibility of such a nanonetworking vision and the main research challenges towards its realization are analyzed from the technological, communications, and computer architecture perspectives.

cs.ET↗

arXiv2020

Accurate deep neural network inference using computational phase-change memory

In-memory computing is a promising non-von Neumann approach for making energy-efficient deep learning inference hardware. Crossbar arrays of resistive memory devices can be used to encode the network weights and perform efficient analog matrix-vector multiplications without intermediate movements of data. However, due to device variability and noise, the network needs to be trained in a specific way so that transferring the digitally trained weights to the analog resistive memory devices will not result in significant loss of accuracy. Here, we introduce a methodology to train ResNet-type convolutional neural networks that results in no appreciable accuracy loss when transferring weights to in-memory computing hardware based on phase-change memory (PCM). We also propose a compensation technique that exploits the batch normalization parameters to improve the accuracy retention over time. We achieve a classification accuracy of 93.7% on the CIFAR-10 dataset and a top-1 accuracy on the ImageNet benchmark of 71.6% after mapping the trained weights to PCM. Our hardware results on CIFAR-10 with ResNet-32 demonstrate an accuracy above 93.5% retained over a one day period, where each of the 361,722 synaptic weights of the network is programmed on just two PCM devices organized in a differential configuration.

cs.ET↗

arXiv2020

Accurate Emulation of Memristive Crossbar Arrays for In-Memory Computing

In-memory computing is an emerging non-von Neumann computing paradigm where certain computational tasks are performed in memory by exploiting the physical attributes of the memory devices. Memristive devices such as phase-change memory (PCM), where information is stored in terms of their conductance levels, are especially well suited for in-memory computing. In particular, memristive devices, when organized in a crossbar configuration can be used to perform matrix-vector multiply operations by exploiting Kirchhoff's circuit laws. To explore the feasibility of such in-memory computing cores in applications such as deep learning as well as for system-level architectural exploration, it is highly desirable to develop an accurate hardware emulator that captures the key physical attributes of the memristive devices. Here, we present one such emulator for PCM and experimentally validate it using measurements from a PCM prototype chip. Moreover, we present an application of the emulator for neural network inference where our emulator can capture the conductance evolution of approximately 400,000 PCM devices remarkably well.

cs.ET↗