arXiv subjects

Isaac Kazuo Uyehara

Publications and source records attributed to Isaac Kazuo Uyehara.

5 recordsLinked to original sources

arXiv2026

Using Vision Language Foundation Models to Generate Plant Simulation Configurations via In-Context Learning

This paper introduces a benchmark for evaluating whether vision-language models (VLMs) can generate plant simulation configurations from imagery using in-context learning. We study this benchmark for cowpea plot reconstruction for plant simulations, where the VLM needs to generate structured JSON configurations that include field and plant information. Open-source multimodal models from Gemma 4 and Qwen3.5 families are evaluated on a synthetic cowpea dataset with known JSON ground truth and on a real drone orthophoto dataset with field-collected JSON. Five in-context learning methods are used, from format restriction instruction to few-shot image examples with auxiliary grounding information. The results show that VLMs can generate valid JSON outputs, can generally estimate days after planting (DAP), plant counts, plant locations, sun angles, and leaf chlorophyll content, and can render approximate simulations of cowpea plots. Error metrics fluctuate across model families and often remain worse than dataset baselines, particularly when VLMs' pretrained knowledge dominates over weak visual evidence. These results position image-to-simulation JSON generation as a promising but currently challenging task, and establish a benchmark for studying how multimodal reasoning, prompt design, and the sim-to-real domain gap affect plant phenotyping tasks.

cs.CV↗

arXiv2026

Can Synthetic Data Overcome the Generalization Limits of AI-Based Flower and Pod Detection Across Cowpea Breeding Genotypes and Environments?

High-throughput phenotyping requires AI-enabled computer vision models that generalize across genotypes, locations, and growing seasons, yet such models often lose accuracy under new conditions. Annotating real imagery for every genotype-by-environment (G x E) combination a breeding program encounters is prohibitively expensive. We quantify how G x E shifts affect AI-based detection of cowpea flowers and pods across two California locations and two growing seasons. Flower detection mAP@50 fell from 76.3% to as low as 50.6% under unseen shifts, and pod detection was more sensitive. Feature-space and image-quality diagnostics confirmed these losses track measurable distributional shifts. Because closing this gap with real data alone is not practical, we test whether synthetic imagery, rendered from a procedural 3D cowpea model, can substitute for that annotation burden. Synthetic supervision alone improved over pretraining but remained limited by a domain gap driven by camera image formation, not scene content. A domain-gap-aware camera-realism augmentation strategy, optimized against measured real-image statistics via Wasserstein distance, narrowed this gap, and a linear HDR representation converted a smaller measured gap into a larger detection gain than an 8-bit representation. Optimized HDR synthetic data combined with as few as five real images matched or exceeded the real-data baseline for spatial generalization, and pod detection benefited most at the lowest shot counts, with more modest gains under temporal shift. These results show that synthetic data can overcome the generalization limits of AI-based flower and pod detection, but only when the domain gap is measured and optimized rather than assumed away.

cs.CV↗

arXiv2026

A Vision Language Model for Generating Procedural Plant Architecture Representations from Simulated Images

Three-dimensional (3D) procedural plant architecture models have emerged as an important tool for simulation-based studies of plant structure and function, extracting plant architectural parameters from field measurements, and for generating realistic plants in computer graphics. However, measuring the architectural parameters and nested structures for these models at the field scales remains prohibitively labor-intensive. We present a novel algorithm that generates a 3D plant architecture from an image, creating a functional structural plant model that reflects organ-level geometric and topological parameters and provides a more comprehensive representation of the plant's architecture. Instead of using 3D sensors or processing multi-view images with computer vision to obtain the 3D structure of plants, we proposed a method that generates token sequences that encode a procedural definition of plant architecture. This work used only synthetic images for training and testing, with exact architectural parameters known, allowing testing of the hypothesis that organ-level architectural parameters could be extracted from image data using a vision-language model (VLM). A synthetic dataset of cowpea plant images was generated using the Helios 3D plant simulator, with the detailed plant architecture encoded in XML files. We developed a plant architecture tokenizer for the XML file defining plant architecture, converting it into a token sequence that a language model can predict. The model achieved a token F1 score of 0.73 during teacher-forced training. Evaluation of the model was performed through autoregressive generation, achieving a BLEU-4 score of 94.00% and a ROUGE-L score of 0.5182. This led to the conclusion that such plant architecture model generation and parameter extraction were possible from synthetic images; thus, future work will extend the approach to real imagery data.

cs.CV↗

arXiv2025

AgRowStitch: A High-fidelity Image Stitching Pipeline for Ground-based Agricultural Images

Agricultural imaging often requires individual images to be stitched together into a final mosaic for analysis. However, agricultural images can be particularly challenging to stitch because feature matching across images is difficult due to repeated textures, plants are non-planar, and mosaics built from many images can accumulate errors that cause drift. Although these issues can be mitigated by using georeferenced images or taking images at high altitude, there is no general solution for images taken close to the crop. To address this, we created a user-friendly and open source pipeline for stitching ground-based images of a linear row of crops that does not rely on additional data. First, we use SuperPoint and LightGlue to extract and match features within small batches of images. Then we stitch the images in each batch in series while imposing constraints on the camera movement. After straightening and rescaling each batch mosaic, all batch mosaics are stitched together in series and then straightened into a final mosaic. We tested the pipeline on images collected along 72 m long rows of crops using two different agricultural robots and a camera manually carried over the row. In all three cases, the pipeline produced high-quality mosaics that could be used to georeference real world positions with a mean absolute error of 20 cm. This approach provides accessible leaf-scale stitching to users who need to coarsely georeference positions within a row, but do not have access to accurate positional data or sophisticated imaging systems.

cs.CV↗

arXiv2025

The meaning of social complexity: insights from a theoretical treatment of the social brain hypothesis

This work builds on a rich discourse surrounding the social brain hypothesis as well as the definition and quantification of social complexity. We believe this manuscript provides a new perspective on the topic by pairing a conceptual framework with an evolutionary model. This treatment of the topic allows us to analyse the social brain hypothesis with a focus on social complexity rather than controversies related to ecological covariates and brain measurements. We show that even in the confines of a simplified and idealized model, quantifying social complexity a priori can be intractable. As a result, we believe that we should generally approach metrics of social complexity with skepticism. This has general implications for empirical tests of the social brain hypothesis and practical implications for those trying to design a metric of social complexity. We provide recommendations for future researchers studying the social brain hypothesis and offer a starting point for mathematical treatments of social complexity.

physics.soc-ph↗