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Isaac Pincus

Publications and source records attributed to Isaac Pincus.

4 recordsLinked to original sources

Numerical analysis of capillarity-driven thinning rheometry for polydisperse polymer solutions

Liquid bridges of polymer solutions that are self-thinning due to the action of capillarity undergo a transition from Newtonian-like linear thinning to exponential elastocapillary (EC) thinning when the polymer chains are stretched by the elongational flow and the resulting elastic contribution to the stress exceeds the viscous stress. As the Oldroyd-B model predicts that the EC thinning rate is set by the relaxation time ($\tau$) of the polymer, the characteristic thinning timescale extracted from the exponential decay ($\tau_{EC}$) is commonly interpreted as a direct measure of $\tau$. Here we show that for real polydisperse polymer solutions, $\tau_{EC}$ reflects only a subset of the molecular weight (MW) distribution -- those chains actively stretched by the flow. We demonstrate this using a multi-mode FENE-PM model that explicitly incorporates the molecular weight distribution, validated against the filament thinning experiments of Calabrese et al. [Phys. Rev. X 15, 021025 (2025)] on bidisperse blends of narrowly-distributed low-MW and high-MW polystyrene solutions. The model predicts that only chains with effective Weissenberg number $Wi = \dot{\varepsilon} \tau > 1/2 $ are extended by the flow and contribute elastic stress; this threshold naturally favors high molecular weight species, whose longer relaxation times allow them to remain stretched throughout the elastocapillary regime. The measured $\tau_{EC}$ is therefore set by this stress-contributing sub-ensemble rather than the full distribution. Further, our model predicts that $\tau_{EC}$ depends on both the molecular weight distribution and total polymer concentration, as well as experimental parameters including pre-stretch and initial filament diameter, confirming that it is best understood as an experiment-specific quantity rather than an intrinsic fluid property.

cond-mat.soft

Pore-shape and its spatial organization control intrinsic permeability of porous media

The structure of a porous material, and in particular its spatial variability, is known to control the intrinsic permeability of the system. We investigate how dead-end pores influence the intrinsic permeability of a porous medium beyond their contribution to total pore volume. Dead-end pores are ubiquitous in porous media, yet they are often treated as hydraulically inactive regions whose influence is assumed to be negligible or absorbed into effective-porosity descriptions. We perform pore-scale flow simulations across different dead-end pore structures, including heterogeneous arrangements, controlled granular assemblies, and a minimal single-channel model to study their impact on the system macroscopic permeability. This strategy allows us to isolate the effects of dead-end pore density, depth, and orientation while preserving the transmitting network. We find that dead-end pores can influence intrinsic permeability: increasing the density of dead-end pores along percolating flow paths enhances permeability, whereas pore depth and junction orientation have negligible effects. The observed permeability enhancement originates from localized hydrodynamic interactions at junctions between transmitting and dead-end pores. Based on these results, we propose an effective formulation that relates the density and spatial organization of dead-end pores relative to the transmitting network to macroscopic permeability. Our findings show that dead-end pore architecture provides an additional geometric control on intrinsic permeability beyond porosity and pore-size statistics.

cond-mat.soft

Interplay of Electrostatic Interaction and Steric Repulsion between Bacteria and Gold Surface Influences Raman Enhancement

Plasmonic nanostructures have wide applications in photonics including pathogen detection and diagnosis via Surface-Enhanced Raman Spectroscopy (SERS). Despite major role plasmonics play in signal enhancement, electrostatics in SERS is yet to be fully understood and harnessed. Here, we perform a systematic study of electrostatic interactions between 785 nm resonant gold nanorods designed to harbor zeta potentials of +29, +16, 0 and -9 mV spanning positive neutral and negative domains. SERS activity is tested on representative Gram-negative Escherichia coli and Gram-positive Staphylococcus epidermidis bacteria with zeta potentials of -30 and -23 mV respectively in water. Raman spectroscopy and Cryo-Electron microscopy reveal that +29, +16, 0 and -9 mV nanorods give SERS enhancement of 7.2X, 3.6X, 4.2X, 1.3X to Staphylococcus epidermidis and 3.9X, 2.8X, 2.9X, 1.1X to Escherichia coli. Theoretical results show that electrostatics play the major role among all interaction forces in determining cell-nanorod proximity and signal enhancement. We identify steric repulsion due to cell protrusions to be the critical opposing force. Finally, a design principle is proposed to estimate the electrostatic strength in SERS. Our work provides new insights into the principle of bacteria-nanorod interactions, enabling reproducible and precise biomolecular readouts, critical for next-generation point-of-care diagnostics and smart healthcare applications.

q-bio.CB

Flow dichroism of DNA can be quantitatively predicted via coarse-grained molecular simulations

We demonstrate the use of multiscale polymer modelling to quantitatively predict DNA linear dichroism (LD) in shear flow. LD is the difference in absorption of light polarised along two perpendicular axes, and has long been applied to study biopolymer structure and drug-biopolymer interactions. As LD is orientation-dependent, the sample must be aligned in order to measure a signal. Shear flow via a Couette cell can generate the required orientation, however it is challenging to separate the LD due to changes in polymer conformation from specific interactions, e.g. drug-biopolymer. In this study, we have applied a combination of Brownian dynamics and equilibrium Monte Carlo simulations to accurately predict polymer alignment, and hence flow LD, at modest computational cost. As the optical and conformational contributions to the LD can be explicitly separated, our findings allow for enhanced quantitative interpretation of LD spectra through the use of an in-silico model to capture conformational changes. Our model requires no fitting and only five input parameters, the DNA contour length, persistence length, optical factor, solvent quality, and relaxation time, all of which have been well characterized in prior literature. The method is sufficiently general to apply to a wide range of biopolymers beyond DNA, and our findings could help guide the search for new pharmaceutical drug targets via flow LD.

cond-mat.soft