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Isabelle Bloch

Publications and source records attributed to Isabelle Bloch.

At least 19 recordsLinked to original sources

Aggregative Semantics for Quantitative Bipolar Argumentation Frameworks

Formal argumentation is being used increasingly in artificial intelligence as an effective and understandable way to model potentially conflicting pieces of information, called arguments, and identify so-called acceptable arguments depending on a chosen semantics. This paper deals with the specific context of Quantitative Bipolar Argumentation Frameworks (QBAF), where arguments have intrinsic weights and can attack or support each other. In this context, we introduce a novel family of gradual semantics, called aggregative semantics. In order to deal with situations in which attackers and supporters do not play a symmetric role, and in contrast to modular semantics, we propose to aggregate attackers and supporters separately. This leads to a three-stage computation, which consists in computing a global weight for attackers and another for supporters, before aggregating these two values with the intrinsic weight of the argument. We discuss the properties that the three aggregation functions should satisfy depending on the context, as well as their relationships with the classical principles for gradual semantics. This discussion is supported by various simple examples, as well as a final example on which five hundred aggregative semantics are tested and compared, illustrating the range of possible behaviours with aggregative semantics. Decomposing the computation into three distinct and interpretable steps leads to a more parametrisable computation: it keeps the bipolarity one step further than what is done in the literature, and it leads to more understandable gradual semantics.

cs.AI

Visionerves: Automatic and Reproducible Hybrid AI for Peripheral Nervous System Recognition Applied to Endometriosis Cases

Endometriosis often leads to chronic pelvic pain and possible nerve involvement, yet imaging the peripheral nerves remains a challenge. We introduce Visionerves, a novel hybrid AI framework for peripheral nervous system recognition from multi-gradient DWI and morphological MRI data. Unlike conventional tractography, Visionerves encodes anatomical knowledge through fuzzy spatial relationships, removing the need for selection of manual ROIs. The pipeline comprises two phases: (A) automatic segmentation of anatomical structures using a deep learning model, and (B) tractography and nerve recognition by symbolic spatial reasoning. Applied to the lumbosacral plexus in 10 women with (confirmed or suspected) endometriosis, Visionerves demonstrated substantial improvements over standard tractography, with Dice score improvements of up to 25% and spatial errors reduced to less than 5 mm. This automatic and reproducible approach enables detailed nerve analysis and paves the way for non-invasive diagnosis of endometriosis-related neuropathy, as well as other conditions with nerve involvement.

cs.CV

First Order Logic with Fuzzy Semantics for Describing and Recognizing Nerves in Medical Images

This article deals with the description and recognition of fiber bundles, in particular nerves, in medical images, based on the anatomical description of the fiber trajectories. To this end, we propose a logical formalization of this anatomical knowledge. The intrinsically imprecise description of nerves, as found in anatomical textbooks, leads us to propose fuzzy semantics combined with first-order logic. We define a language representing spatial entities, relations between these entities and quantifiers. A formula in this language is then a formalization of the natural language description. The semantics are given by fuzzy representations in a concrete domain and satisfaction degrees of relations. Based on this formalization, a spatial reasoning algorithm is proposed for segmentation and recognition of nerves from anatomical and diffusion magnetic resonance images, which is illustrated on pelvic nerves in pediatric imaging, enabling surgeons to plan surgery.

cs.AI

An action language-based formalisation of an abstract argumentation framework

An abstract argumentation framework is a commonly used formalism to provide a static representation of a dialogue. However, the order of enunciation of the arguments in an argumentative dialogue is very important and can affect the outcome of this dialogue. In this paper, we propose a new framework for modelling abstract argumentation graphs, a model that incorporates the order of enunciation of arguments. By taking this order into account, we have the means to deduce a unique outcome for each dialogue, called an extension. We also establish several properties, such as termination and correctness, and discuss two notions of completeness. In particular, we propose a modification of the previous transformation based on a "last enunciated last updated" strategy, which verifies the second form of completeness.

cs.AI

Exploiting temporal information to detect conversational groups in videos and predict the next speaker

Studies in human human interaction have introduced the concept of F formation to describe the spatial arrangement of participants during social interactions. This paper has two objectives. It aims at detecting F formations in video sequences and predicting the next speaker in a group conversation. The proposed approach exploits time information and human multimodal signals in video sequences. In particular, we rely on measuring the engagement level of people as a feature of group belonging. Our approach makes use of a recursive neural network, the Long Short Term Memory (LSTM), to predict who will take the speaker's turn in a conversation group. Experiments on the MatchNMingle dataset led to 85% true positives in group detection and 98% accuracy in predicting the next speaker.

cs.CV

Ultraproducts in abstract categorical logic

In a previous publication, we introduced an abstract logic via an abstract notion of quantifier. Drawing upon concepts from categorical logic, this abstract logic interprets formulas from context as subobjects in a specific category, e.g., Cartesian, regular, or coherent categories, Grothendieck, or elementary toposes. We proposed an entailment system formulated as a sequent calculus which we proved complete. Building on this foundation, our current work explores model theory within abstract logic. More precisely, we generalize one of the most important and powerful classical model theory methods, namely the ultraproduct method, and show its fundamental theorem, i.e., Los's theorem. The result is shown as independently as possible of a given quantifier.

cs.LO

Non-Redundant Combination of Hand-Crafted and Deep Learning Radiomics: Application to the Early Detection of Pancreatic Cancer

We address the problem of learning Deep Learning Radiomics (DLR) that are not redundant with Hand-Crafted Radiomics (HCR). To do so, we extract DLR features using a VAE while enforcing their independence with HCR features by minimizing their mutual information. The resulting DLR features can be combined with hand-crafted ones and leveraged by a classifier to predict early markers of cancer. We illustrate our method on four early markers of pancreatic cancer and validate it on a large independent test set. Our results highlight the value of combining non-redundant DLR and HCR features, as evidenced by an improvement in the Area Under the Curve compared to baseline methods that do not address redundancy or solely rely on HCR features.

eess.IV

Decoupled conditional contrastive learning with variable metadata for prostate lesion detection

Early diagnosis of prostate cancer is crucial for efficient treatment. Multi-parametric Magnetic Resonance Images (mp-MRI) are widely used for lesion detection. The Prostate Imaging Reporting and Data System (PI-RADS) has standardized interpretation of prostate MRI by defining a score for lesion malignancy. PI-RADS data is readily available from radiology reports but is subject to high inter-reports variability. We propose a new contrastive loss function that leverages weak metadata with multiple annotators per sample and takes advantage of inter-reports variability by defining metadata confidence. By combining metadata of varying confidence with unannotated data into a single conditional contrastive loss function, we report a 3% AUC increase on lesion detection on the public PI-CAI challenge dataset. Code is available at: https://github.com/camilleruppli/decoupled_ccl

cs.CV

Weakly-supervised positional contrastive learning: application to cirrhosis classification

Large medical imaging datasets can be cheaply and quickly annotated with low-confidence, weak labels (e.g., radiological scores). Access to high-confidence labels, such as histology-based diagnoses, is rare and costly. Pretraining strategies, like contrastive learning (CL) methods, can leverage unlabeled or weakly-annotated datasets. These methods typically require large batch sizes, which poses a difficulty in the case of large 3D images at full resolution, due to limited GPU memory. Nevertheless, volumetric positional information about the spatial context of each 2D slice can be very important for some medical applications. In this work, we propose an efficient weakly-supervised positional (WSP) contrastive learning strategy where we integrate both the spatial context of each 2D slice and a weak label via a generic kernel-based loss function. We illustrate our method on cirrhosis prediction using a large volume of weakly-labeled images, namely radiological low-confidence annotations, and small strongly-labeled (i.e., high-confidence) datasets. The proposed model improves the classification AUC by 5% with respect to a baseline model on our internal dataset, and by 26% on the public LIHC dataset from the Cancer Genome Atlas. The code is available at: https://github.com/Guerbet-AI/wsp-contrastive.

cs.CV

Meta-Learners for Few-Shot Weakly-Supervised Medical Image Segmentation

Most uses of Meta-Learning in visual recognition are very often applied to image classification, with a relative lack of works in other tasks {such} as segmentation and detection. We propose a generic Meta-Learning framework for few-shot weakly-supervised segmentation in medical imaging domains. We conduct a comparative analysis of meta-learners from distinct paradigms adapted to few-shot image segmentation in different sparsely annotated radiological tasks. The imaging modalities include 2D chest, mammographic and dental X-rays, as well as 2D slices of volumetric tomography and resonance images. Our experiments consider a total of 9 meta-learners, 4 backbones and multiple target organ segmentation tasks. We explore small-data scenarios in radiology with varying weak annotation styles and densities. Our analysis shows that metric-based meta-learning approaches achieve better segmentation results in tasks with smaller domain shifts in comparison to the meta-training datasets, while some gradient- and fusion-based meta-learners are more generalizable to larger domain shifts.

cs.CV

Morpho-logic from a Topos Perspective: Application to symbolic AI

Modal logics have proved useful for many reasoning tasks in symbolic artificial intelligence (AI), such as belief revision, spatial reasoning, among others. On the other hand, mathematical morphology (MM) is a theory for non-linear analysis of structures, that was widely developed and applied in image analysis. Its mathematical bases rely on algebra, complete lattices, topology. Strong links have been established between MM and mathematical logics, mostly modal logics. In this paper, we propose to further develop and generalize this link between mathematical morphology and modal logic from a topos perspective, i.e. categorial structures generalizing space, and connecting logics, sets and topology. Furthermore, we rely on the internal language and logic of topos. We define structuring elements, dilations and erosions as morphisms. Then we introduce the notion of structuring neighborhoods, and show that the dilations and erosions based on them lead to a constructive modal logic, for which a sound and complete proof system is proposed. We then show that the modal logic thus defined (called morpho-logic here), is well adapted to define concrete and efficient operators for revision, merging, and abduction of new knowledge, or even spatial reasoning.

cs.AI

Learning to diagnose cirrhosis from radiological and histological labels with joint self and weakly-supervised pretraining strategies

Identifying cirrhosis is key to correctly assess the health of the liver. However, the gold standard diagnosis of the cirrhosis needs a medical intervention to obtain the histological confirmation, e.g. the METAVIR score, as the radiological presentation can be equivocal. In this work, we propose to leverage transfer learning from large datasets annotated by radiologists, which we consider as a weak annotation, to predict the histological score available on a small annex dataset. To this end, we propose to compare different pretraining methods, namely weakly-supervised and self-supervised ones, to improve the prediction of the cirrhosis. Finally, we introduce a loss function combining both supervised and self-supervised frameworks for pretraining. This method outperforms the baseline classification of the METAVIR score, reaching an AUC of 0.84 and a balanced accuracy of 0.75, compared to 0.77 and 0.72 for a baseline classifier.

cs.CV

Model-based inexact graph matching on top of CNNs for semantic scene understanding

Deep learning based pipelines for semantic segmentation often ignore structural information available on annotated images used for training. We propose a novel post-processing module enforcing structural knowledge about the objects of interest to improve segmentation results provided by deep learning. This module corresponds to a "many-to-one-or-none" inexact graph matching approach, and is formulated as a quadratic assignment problem. Our approach is compared to a CNN-based segmentation (for various CNN backbones) on two public datasets, one for face segmentation from 2D RGB images (FASSEG), and the other for brain segmentation from 3D MRIs (IBSR). Evaluations are performed using two types of structural information (distances and directional relations, , this choice being a hyper-parameter of our generic framework). On FASSEG data, results show that our module improves accuracy of the CNN by about 6.3% (the Hausdorff distance decreases from 22.11 to 20.71). On IBSR data, the improvement is of 51% (the Hausdorff distance decreases from 11.01 to 5.4). In addition, our approach is shown to be resilient to small training datasets that often limit the performance of deep learning methods: the improvement increases as the size of the training dataset decreases.

cs.CV

Learning shape distributions from large databases of healthy organs: applications to zero-shot and few-shot abnormal pancreas detection

We propose a scalable and data-driven approach to learn shape distributions from large databases of healthy organs. To do so, volumetric segmentation masks are embedded into a common probabilistic shape space that is learned with a variational auto-encoding network. The resulting latent shape representations are leveraged to derive zeroshot and few-shot methods for abnormal shape detection. The proposed distribution learning approach is illustrated on a large database of 1200 healthy pancreas shapes. Downstream qualitative and quantitative experiments are conducted on a separate test set of 224 pancreas from patients with mixed conditions. The abnormal pancreas detection AUC reached up to 65.41% in the zero-shot configuration, and 78.97% in the few-shot configuration with as few as 15 abnormal examples, outperforming a baseline approach based on the sole volume.

cs.CV

Anatomically constrained CT image translation for heterogeneous blood vessel segmentation

Anatomical structures such as blood vessels in contrast-enhanced CT (ceCT) images can be challenging to segment due to the variability in contrast medium diffusion. The combined use of ceCT and contrast-free (CT) CT images can improve the segmentation performances, but at the cost of a double radiation exposure. To limit the radiation dose, generative models could be used to synthesize one modality, instead of acquiring it. The CycleGAN approach has recently attracted particular attention because it alleviates the need for paired data that are difficult to obtain. Despite the great performances demonstrated in the literature, limitations still remain when dealing with 3D volumes generated slice by slice from unpaired datasets with different fields of view. We present an extension of CycleGAN to generate high fidelity images, with good structural consistency, in this context. We leverage anatomical constraints and automatic region of interest selection by adapting the Self-Supervised Body Regressor. These constraints enforce anatomical consistency and allow feeding anatomically-paired input images to the algorithm. Results show qualitative and quantitative improvements, compared to stateof-the-art methods, on the translation task between ceCT and CT images (and vice versa).

eess.IV

Morphological adjunctions represented by matrices in max-plus algebra for signal and image processing

In discrete signal and image processing, many dilations and erosions can be written as the max-plus and min-plus product of a matrix on a vector. Previous studies considered operators on symmetrical, unbounded complete lattices, such as Cartesian powers of the completed real line. This paper focuses on adjunctions on closed hypercubes, which are the complete lattices used in practice to represent digital signals and images. We show that this constrains the representing matrices to be doubly-0-astic and we characterise the adjunctions that can be represented by them. A graph interpretation of the defined operators naturally arises from the adjacency relationship encoded by the matrices, as well as a max-plus spectral interpretation.

eess.SP

Optimizing transformations for contrastive learning in a differentiable framework

Current contrastive learning methods use random transformations sampled from a large list of transformations, with fixed hyperparameters, to learn invariance from an unannotated database. Following previous works that introduce a small amount of supervision, we propose a framework to find optimal transformations for contrastive learning using a differentiable transformation network. Our method increases performances at low annotated data regime both in supervision accuracy and in convergence speed. In contrast to previous work, no generative model is needed for transformation optimization. Transformed images keep relevant information to solve the supervised task, here classification. Experiments were performed on 34000 2D slices of brain Magnetic Resonance Images and 11200 chest X-ray images. On both datasets, with 10% of labeled data, our model achieves better performances than a fully supervised model with 100% labels.

cs.LG

Is the U-Net Directional-Relationship Aware?

CNNs are often assumed to be capable of using contextual information about distinct objects (such as their directional relations) inside their receptive field. However, the nature and limits of this capacity has never been explored in full. We explore a specific type of relationship~-- directional~-- using a standard U-Net trained to optimize a cross-entropy loss function for segmentation. We train this network on a pretext segmentation task requiring directional relation reasoning for success and state that, with enough data and a sufficiently large receptive field, it succeeds to learn the proposed task. We further explore what the network has learned by analysing scenarios where the directional relationships are perturbed, and show that the network has learned to reason using these relationships.

cs.CV