arXiv subjects

Ivan Calvo

Publications and source records attributed to Ivan Calvo.

35 records · Page 2Linked to original sources

arXiv2008

Topological characterization of flow structures in resistive pressure-gradient-driven turbulence

Visualization of turbulent flows is a powerful tool to help understand the turbulence dynamics and induced transport. However, it does not provide a quantitative description of the observed structures. In this paper, an approach to characterize quantitatively the topology of the flows is given. The technique, which can be applied to any type of turbulence dynamics, is illustrated through the example of resistive ballooning instabilities.

physics.plasm-ph↗

arXiv2008

Path integral formulation of fractional Brownian motion for general Hurst exponent

In J. Phys. A: Math. Gen. 28, 4305 (1995), K. L. Sebastian gave a path integral computation of the propagator of subdiffusive fractional Brownian motion (fBm), i.e. fBm with a Hurst or self-similarity exponent $H\in(0,1/2)$. The extension of Sebastian's calculation to superdiffusion, $H\in(1/2,1]$, becomes however quite involved due to the appearance of additional boundary conditions on fractional derivatives of the path. In this paper, we address the construction of the path integral representation in a different fashion, which allows to treat both subdiffusion and superdiffusion on an equal footing. The derivation of the propagator of fBm for general Hurst exponent is then performed in a neat and unified way.

cond-mat.stat-mech↗

arXiv2008

Pseudochaotic poloidal transport in the laminar regime of the resistive ballooning instabilities

In toroidal geometry, and prior to the establishment of a fully developed turbulent state, the so-called topological instability of the pressure-gradient-driven turbulence is observed. In this intermediate state, a narrow spectral band of modes dominates the dynamics, giving rise to the formation of iso-surfaces of electric potential with a complicated topology. Since E x B advection of tracer particles takes place along these iso-surfaces, their topological complexity affects the characteristic features of radial and poloidal transport dramatically. In particular, they both become strongly non-diffusive and non-Gaussian. Since radial transport determines the system confinement properties and poloidal transport controls the equilibration dynamics (on any magnetic surface), the development of non-diffusive models in both directions is thus of physical interest. In previous work, a fractional model to describe radial transport was constructed by the authors. In this contribution, recent results on periodic fractional models are exploited for the construction of an effective model of poloidal transport. Numerical computations using a three-dimensional reduced magnetohydrodynamic set of equations are compared with analytical solutions of the fractional periodic model. It is shown that the aforementioned analytical solutions accurately describe poloidal transport, which turns out to be superdiffusive with index $α=1$.

physics.plasm-ph↗

arXiv2007

Fractional generalization of Fick's law: a microscopic approach

In the study of transport in inhomogeneous systems it is common to construct transport equations invoking the inhomogeneous Fick law. The validity of this approach requires that at least two ingredients be present in the system. First, finite characteristic length and time scales associated to the dominant transport process must exist. Secondly, the transport mechanism must satisfy a microscopic symmetry: global reversibility. Global reversibility is often satisfied in nature. However, many complex systems exhibit a lack of finite characteristic scales. In this Letter we show how to construct a generalization of the inhomogeneous Fick law that does not require the existence of characteristic scales while still satisfying global reversibility.

cond-mat.stat-mech↗

arXiv2007

Dynamics of a 1-D model for the emergence of the plasma edge shear flow layer with momentum conserving Reynolds stress

A one-dimensional version of the second-order transition model based on the sheared flow amplification by Reynolds stress and turbulence supression by shearing is presented. The model discussed in this paper includes a form of the Reynolds stress which explicitly conserves momentum. A linear stability analysis of the critical point is performed. Then, it is shown that the dynamics of weakly unstable states is determined by a reduced equation for the shear flow. In the case in which the flow damping term is diffusive, the stationary solutions are those of the real Ginzburg-Landau equation.

physics.plasm-ph↗

arXiv2007

Continuous Time Random Walks in periodic systems: fluid limit and fractional differential equations on the circle

In this article, the continuous time random walk on the circle is studied. We derive the corresponding generalized master equation and discuss the effects of topology, especially important when Levy flights are allowed. Then, we work out the fluid limit equation, formulated in terms of the periodic version of the fractional Riemann-Liouville operators, for which we provide explicit expressions. Finally, we compute the propagator in some simple cases. The analysis presented herein should be relevant when investigating anomalous transport phenomena in systems with periodic dimensions.

cond-mat.stat-mech↗

arXiv2007

Poisson sigma models on surfaces with boundary: classical and quantum aspects

The topics covered in this thesis may be divided into three parts. Firstly, we perform a study on the most general branes which are consistent with the Poisson sigma model, both at the classical and quantum levels. The second part is devoted to the particular case in which the target Poisson manifold is a Poisson-Lie group. Finally, we investigate the supersymmetric version of the twisted Poisson sigma model and its connection with twisted generalized complex geometry.

hep-th↗

arXiv2007

Bopp operators and phase-space spin dynamics: Application to rotational quantum brownian motion

As already known for nonrelativistic spinless particles, Bopp operators give an elegant and simple way to compute the dynamics of quasiprobability distributions in the phase space formulation of Quantum Mechanics. In this work, we present a generalization of Bopp operators for spins and apply our results to the case of open spin systems. This approach allows to take the classical limit in a transparent way, recovering the corresponding Fokker-Planck equation.

quant-ph↗

arXiv2006

Quantum mechanical calculation of the effects of stiff and rigid constraints in the conformational equilibrium of the Alanine dipeptide

If constraints are imposed on a macromolecule, two inequivalent classical models may be used: the stiff and the rigid one. This work studies the effects of such constraints on the Conformational Equilibrium Distribution (CED) of the model dipeptide HCO-L-Ala-NH2 without any simplifying assumption. We use ab initio Quantum Mechanics calculations including electron correlation at the MP2 level to describe the system, and we measure the conformational dependence of all the correcting terms to the naive CED based in the Potential Energy Surface (PES) that appear when the constraints are considered. These terms are related to mass-metric tensors determinants and also occur in the Fixman's compensating potential. We show that some of the corrections are non-negligible if one is interested in the whole Ramachandran space. On the other hand, if only the energetically lower region, containing the principal secondary structure elements, is assumed to be relevant, then, all correcting terms may be neglected up to peptides of considerable length. This is the first time, as far as we know, that the analysis of the conformational dependence of these correcting terms is performed in a relevant biomolecule with a realistic potential energy function.

q-bio.QM↗

arXiv2006

Explicit factorization of external coordinates in constrained Statistical Mechanics models

If a macromolecule is described by curvilinear coordinates or rigid constraints are imposed, the equilibrium probability density that must be sampled in Monte Carlo simulations includes the determinants of different mass-metric tensors. In this work, we explicitly write the determinant of the mass-metric tensor G and of the reduced mass-metric tensor g, for any molecule, general internal coordinates and arbitrary constraints, as a product of two functions; one depending only on the external coordinates that describe the overall translation and rotation of the system, and the other only on the internal coordinates. This work extends previous results in the literature, proving with full generality that one may integrate out the external coordinates and perform Monte Carlo simulations in the internal conformational space of macromolecules. In addition, we give a general mathematical argument showing that the factorization is a consequence of the symmetries of the metric tensors involved. Finally, the determinant of the mass-metric tensor G is computed explicitly in a set of curvilinear coordinates specially well-suited for general branched molecules.

q-bio.QM↗

arXiv2006

Effects of constraints in general branched molecules: A quantitative ab initio study in HCO-L-Ala-NH2

A general approach to the design of accurate classical potentials for protein folding is described. It includes the introduction of a meaningful statistical measure of the differences between approximations of the same potential energy, the definition of a set of Systematic and Approximately Separable and Modular Internal Coordinates (SASMIC), much convenient for the simulation of general branched molecules, and the imposition of constraints on the most rapidly oscillating degrees of freedom. All these tools are used to study the effects of constraints in the Conformational Equilibrium Distribution (CED) of the model dipeptide HCO-L-Ala-NH2. We use ab initio Quantum Mechanics calculations including electron correlation at the MP2 level to describe the system, and we measure the conformational dependence of the correcting terms to the naive CED based in the Potential Energy Surface (PES) without any simplifying assumption. These terms are related to mass-metric tensors determinants and also occur in the Fixman's compensating potential. We show that some of the corrections are non-negligible if one is interested in the whole Ramachandran space. On the other hand, if only the energetically lower region, containing the principal secondary structure elements, is assumed to be relevant, then, all correcting terms may be neglected up to peptides of considerable length. This is the first time, as far as we know, that the analysis of the conformational dependence of these correcting terms is performed in a relevant biomolecule with a realistic potential energy function.

q-bio.BM↗

arXiv2006

Star products and branes in Poisson-Sigma models

We prove that non-coisotropic branes in the Poisson-Sigma model are allowed at the quantum level. When the brane is defined by second-class constraints, the perturbative quantization of the model yields the Kontsevich's star product associated to the Dirac bracket on the brane. We also discuss the quantization when both first and second-class constraints are present.

hep-th↗

arXiv2006

Dual branes in topological sigma models over Lie groups. BF-theory and non-factorizable Lie bialgebras

We complete the study of the Poisson-Sigma model over Poisson-Lie groups. Firstly, we solve the models with targets $G$ and $G^*$ (the dual group of the Poisson-Lie group $G$) corresponding to a triangular $r$-matrix and show that the model over $G^*$ is always equivalent to BF-theory. Then, given an arbitrary $r$-matrix, we address the problem of finding D-branes preserving the duality between the models. We identify a broad class of dual branes which are subgroups of $G$ and $G^*$, but not necessarily Poisson-Lie subgroups. In particular, they are not coisotropic submanifolds in the general case and what is more, we show that by means of duality transformations one can go from coisotropic to non-coisotropic branes. This fact makes clear that non-coisotropic branes are natural boundary conditions for the Poisson-Sigma model.

hep-th↗

arXiv2006

Supersymmetric WZ-Poisson sigma model and twisted generalized complex geometry

It has been shown recently that extended supersymmetry in twisted first-order sigma models is related to twisted generalized complex geometry in the target. In the general case there are additional algebraic and differential conditions relating the twisted generalized complex structure and the geometrical data defining the model. We study in the Hamiltonian formalism the case of vanishing metric, which is the supersymmetric version of the WZ-Poisson sigma model. We prove that the compatibility conditions reduce to an algebraic equation, which represents a considerable simplification with respect to the general case. We also show that this algebraic condition has a very natural geometrical interpretation. In the derivation of these results the notion of contravariant connections on twisted Poisson manifolds turns out to be very useful.

hep-th↗

arXiv2005

Poisson-Dirac branes in Poisson-Sigma models

We analyse the general boundary conditions (branes) consistent with the Poisson-sigma model and study the structure of the phase space of the model defined on the strip with these boundary conditions. Finally, we discuss the perturbative quantization of the model on the disc with a Poisson-Dirac brane and relate it to Kontsevich's formula for the deformation quantization of the Dirac bracket induced on the brane.

hep-th↗

arXiv2005

Poisson reduction and branes in Poisson-Sigma models

We analyse the problem of boundary conditions for the Poisson-Sigma model and extend previous results showing that non-coisotropic branes are allowed. We discuss the canonical reduction of a Poisson structure to a submanifold, leading to a Poisson algebra that generalizes Dirac's construction. The phase space of the model on the strip is related to the (generalized) Dirac bracket on the branes through a dual pair structure.

hep-th↗

arXiv2003

Topological Poisson Sigma models on Poisson-Lie groups

We solve the topological Poisson Sigma model for a Poisson-Lie group $G$ and its dual $G^*$. We show that the gauge symmetry for each model is given by its dual group that acts by dressing transformations on the target. The resolution of both models in the open geometry reveals that there exists a map from the reduced phase of each model ($P$ and $P^*$) to the main symplectic leaf of the Heisenberg double ($D_{0}$) such that the symplectic forms on $P$, $P^{*}$ are obtained as the pull-back by those maps of the symplectic structure on $D_{0}$. This uncovers a duality between $P$ and $P^{*}$ under the exchange of bulk degrees of freedom of one model with boundary degrees of freedom of the other one. We finally solve the Poisson Sigma model for the Poisson structure on $G$ given by a pair of $r$-matrices that generalizes the Poisson-Lie case. The Hamiltonian analysis of the theory requires the introduction of a deformation of the Heisenberg double.

hep-th↗