arXiv subjects

Ivan Fernandez

Publications and source records attributed to Ivan Fernandez.

14 recordsLinked to original sources

arXiv2025

DCC: Data-Centric Compilation of Machine Learning Kernels for Processing-In-Memory Architectures

High-performance Host processors can integrate Processing-In-Memory (PIM) devices, which can accelerate memory-intensive kernels of Machine Learning (ML) models, including Large Language Models (LLMs), by leveraging the large memory bandwidth available at PIM cores. However, Host processor needs consecutive elements distributed across DRAM banks, while PIM cores need consecutive elements within their local banks. This necessitates data rearrangements in ML kernel execution that pose significant performance and programmability challenges, further exacerbated by the need to support diverse PIM devices. Current compilation approaches lack systematic optimization for diverse ML kernels and multiple PIM devices, and may largely ignore data rearrangement costs during the compute code optimization step. We show that data rearrangements and compute code optimization are interdependent, and need to be jointly optimized during the tuning process. Therefore, we design DCC, the first data-centric ML compiler for PIM systems that jointly co-optimizes data rearrangements and compute code in a unified tuning process. DCC integrates a multi-layer PIM abstraction to support multiple PIM backends. DCC enables effective co-optimization of data partitioning strategies with compute loop partitioning schemes. DCC applies PIM-specific code optimizations, and leverages a fast and accurate performance prediction model to select the bestperforming code schedule for a given kernel on a target PIM architecture. Our evaluations in various individual ML kernels show that DCC achieves up to 7.68x speedup (2.21x average) on HBM-PIM, and up to 13.17x speedup (3.92x average) on AttAcc PIM, over GPU-only execution. In end-to-end LLM inference, DCC on AttAcc accelerates GPT-3 and LLaMA-2 by 4.52x average (up to 7.71x in LLaMA-2) over GPU. DCC is open-sourced at https://github.com/SPIN-Research-Group/DCC.

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arXiv2024

PyGim: An Efficient Graph Neural Network Library for Real Processing-In-Memory Architectures

Graph Neural Networks (GNNs) are emerging ML models to analyze graph-structure data. Graph Neural Network (GNN) execution involves both compute-intensive and memory-intensive kernels, the latter dominates the total time, being significantly bottlenecked by data movement between memory and processors. Processing-In-Memory (PIM) systems can alleviate this data movement bottleneck by placing simple processors near or inside to memory arrays. In this work, we introduce PyGim, an efficient ML library that accelerates GNNs on real PIM systems. We propose intelligent parallelization techniques for memory-intensive kernels of GNNs tailored for real PIM systems, and develop handy Python API for them. We provide hybrid GNN execution, in which the compute-intensive and memory-intensive kernels are executed in processor-centric and memory-centric computing systems, respectively. We extensively evaluate PyGim on a real-world PIM system with 1992 PIM cores using emerging GNN models, and demonstrate that it outperforms its state-of-the-art CPU counterpart on Intel Xeon by on average 3.04x, and achieves higher resource utilization than CPU and GPU systems. Our work provides useful recommendations for software, system and hardware designers. PyGim is publicly available at https://github.com/CMU-SAFARI/PyGim.

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arXiv2023

SpChar: Characterizing the Sparse Puzzle via Decision Trees

Sparse matrix computation is crucial in various modern applications, including large-scale graph analytics, deep learning, and recommender systems. The performance of sparse kernels varies greatly depending on the structure of the input matrix, making it difficult to gain a comprehensive understanding of sparse computation and its relationship to inputs, algorithms, and target machine architecture. Despite extensive research on certain sparse kernels, such as Sparse Matrix-Vector Multiplication (SpMV), the overall family of sparse algorithms has yet to be investigated as a whole. This paper introduces SpChar, a workload characterization methodology for general sparse computation. SpChar employs tree-based models to identify the most relevant hardware and input characteristics, starting from hardware and input-related metrics gathered from Performance Monitoring Counters (PMCs) and matrices. Our analysis enables the creation of a characterization loop that facilitates the optimization of sparse computation by mapping the impact of architectural features to inputs and algorithmic choices. We apply SpChar to more than 600 matrices from the SuiteSparse Matrix collection and three state-of-the-art Arm CPUs to determine the critical hardware and software characteristics that affect sparse computation. In our analysis, we determine that the biggest limiting factors for high-performance sparse computation are (1) the latency of the memory system, (2) the pipeline flush overhead resulting from branch misprediction, and (3) the poor reuse of cached elements. Additionally, we propose software and hardware optimizations that designers can implement to create a platform suitable for sparse computation. We then investigate these optimizations using the gem5 simulator to achieve a significant speedup of up to 2.63x compared to a CPU where the optimizations are not applied.

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arXiv2022

ALP: Alleviating CPU-Memory Data Movement Overheads in Memory-Centric Systems

Partitioning applications between NDP and host CPU cores causes inter-segment data movement overhead, which is caused by moving data generated from one segment (e.g., instructions, functions) and used in consecutive segments. Prior works take two approaches to this problem. The first class of works maps segments to NDP or host cores based on the properties of each segment, neglecting the inter-segment data movement overhead. The second class of works partitions applications based on the overall memory bandwidth saving of each segment, and does not offload each segment to the best-fitting core if they incur high inter-segment data movement. We show that 1) mapping each segment to its best-fitting core ideally can provide substantial benefits, and 2) the inter-segment data movement reduces this benefit significantly. To this end, we introduce ALP, a new programmer-transparent technique to leverage the performance benefits of NDP by alleviating the inter-segment data movement overhead between host and memory and enabling efficient partitioning of applications. ALP alleviates the inter-segment data movement overhead by proactively and accurately transferring the required data between the segments. This is based on the key observation that the instructions that generate the inter-segment data stay the same across different executions of a program on different inputs. ALP uses a compiler pass to identify these instructions and uses specialized hardware to transfer data between the host and NDP cores at runtime. ALP efficiently maps application segments to either host or NDP considering 1) the properties of each segment, 2) the inter-segment data movement overhead, and 3) whether this overhead can be alleviated in a timely manner. We evaluate ALP across a wide range of workloads and show on average 54.3% and 45.4% speedup compared to only-host CPU or only-NDP executions, respectively.

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arXiv2022

Accelerating Time Series Analysis via Processing using Non-Volatile Memories

Time Series Analysis (TSA) is a critical workload to extract valuable information from collections of sequential data, e.g., detecting anomalies in electrocardiograms. Subsequence Dynamic Time Warping (sDTW) is the state-of-the-art algorithm for high-accuracy TSA. We find that the performance and energy efficiency of sDTW on conventional CPU and GPU platforms are heavily burdened by the latency and energy overheads of data movement between the compute and the memory units. sDTW exhibits low arithmetic intensity and low data reuse on conventional platforms, stemming from poor amortization of the data movement overheads. To improve the performance and energy efficiency of the sDTW algorithm, we propose MATSA, the first Magnetoresistive RAM (MRAM)-based Accelerator for TSA. MATSA leverages Processing-Using-Memory (PUM) based on MRAM crossbars to minimize data movement overheads and exploit parallelism in sDTW. MATSA improves performance by 7.35x/6.15x/6.31x and energy efficiency by 11.29x/4.21x/2.65x over server-class CPU, GPU, and Processing-Near-Memory platforms, respectively.

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arXiv2022

A White-Box Adversarial Attack Against a Digital Twin

Recent research has shown that Machine Learning/Deep Learning (ML/DL) models are particularly vulnerable to adversarial perturbations, which are small changes made to the input data in order to fool a machine learning classifier. The Digital Twin, which is typically described as consisting of a physical entity, a virtual counterpart, and the data connections in between, is increasingly being investigated as a means of improving the performance of physical entities by leveraging computational techniques, which are enabled by the virtual counterpart. This paper explores the susceptibility of Digital Twin (DT), a virtual model designed to accurately reflect a physical object using ML/DL classifiers that operate as Cyber Physical Systems (CPS), to adversarial attacks. As a proof of concept, we first formulate a DT of a vehicular system using a deep neural network architecture and then utilize it to launch an adversarial attack. We attack the DT model by perturbing the input to the trained model and show how easily the model can be broken with white-box attacks.

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arXiv2022

Exploiting Near-Data Processing to Accelerate Time Series Analysis

Time series analysis is a key technique for extracting and predicting events in domains as diverse as epidemiology, genomics, neuroscience, environmental sciences, economics, and more. Matrix profile, the state-of-the-art algorithm to perform time series analysis, computes the most similar subsequence for a given query subsequence within a sliced time series. Matrix profile has low arithmetic intensity, but it typically operates on large amounts of time series data. In current computing systems, this data needs to be moved between the off-chip memory units and the on-chip computation units for performing matrix profile. This causes a major performance bottleneck as data movement is extremely costly in terms of both execution time and energy. In this work, we present NATSA, the first Near-Data Processing accelerator for time series analysis. The key idea is to exploit modern 3D-stacked High Bandwidth Memory (HBM) to enable efficient and fast specialized matrix profile computation near memory, where time series data resides. NATSA provides three key benefits: 1) quickly computing the matrix profile for a wide range of applications by building specialized energy-efficient floating-point arithmetic processing units close to HBM, 2) improving the energy efficiency and execution time by reducing the need for data movement over slow and energy-hungry buses between the computation units and the memory units, and 3) analyzing time series data at scale by exploiting low-latency, high-bandwidth, and energy-efficient memory access provided by HBM. Our experimental evaluation shows that NATSA improves performance by up to 14.2x (9.9x on average) and reduces energy by up to 27.2x (19.4x on average), over the state-of-the-art multi-core implementation. NATSA also improves performance by 6.3x and reduces energy by 10.2x over a general-purpose NDP platform with 64 in-order cores.

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arXiv2022

Towards Efficient Sparse Matrix Vector Multiplication on Real Processing-In-Memory Systems

Several manufacturers have already started to commercialize near-bank Processing-In-Memory (PIM) architectures. Near-bank PIM architectures place simple cores close to DRAM banks and can yield significant performance and energy improvements in parallel applications by alleviating data access costs. Real PIM systems can provide high levels of parallelism, large aggregate memory bandwidth and low memory access latency, thereby being a good fit to accelerate the widely-used, memory-bound Sparse Matrix Vector Multiplication (SpMV) kernel. This paper provides the first comprehensive analysis of SpMV on a real-world PIM architecture, and presents SparseP, the first SpMV library for real PIM architectures. We make two key contributions. First, we design efficient SpMV algorithms to accelerate the SpMV kernel in current and future PIM systems, while covering a wide variety of sparse matrices with diverse sparsity patterns. Second, we provide the first comprehensive analysis of SpMV on a real PIM architecture. Specifically, we conduct our rigorous experimental analysis of SpMV kernels in the UPMEM PIM system, the first publicly-available real-world PIM architecture. Our extensive evaluation provides new insights and recommendations for software designers and hardware architects to efficiently accelerate the SpMV kernel on real PIM systems. For more information about our thorough characterization on the SpMV PIM execution, results, insights and the open-source SparseP software package [26], we refer the reader to the full version of the paper [3, 4]. The SparseP software package is publicly and freely available at https://github.com/CMU-SAFARI/SparseP.

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arXiv2022

SparseP: Towards Efficient Sparse Matrix Vector Multiplication on Real Processing-In-Memory Systems

Several manufacturers have already started to commercialize near-bank Processing-In-Memory (PIM) architectures. Near-bank PIM architectures place simple cores close to DRAM banks and can yield significant performance and energy improvements in parallel applications by alleviating data access costs. Real PIM systems can provide high levels of parallelism, large aggregate memory bandwidth and low memory access latency, thereby being a good fit to accelerate the widely-used, memory-bound Sparse Matrix Vector Multiplication (SpMV) kernel. This paper provides the first comprehensive analysis of SpMV on a real-world PIM architecture, and presents SparseP, the first SpMV library for real PIM architectures. We make three key contributions. First, we implement a wide variety of software strategies on SpMV for a multithreaded PIM core and characterize the computational limits of a single multithreaded PIM core. Second, we design various load balancing schemes across multiple PIM cores, and two types of data partitioning techniques to execute SpMV on thousands of PIM cores: (1) 1D-partitioned kernels to perform the complete SpMV computation only using PIM cores, and (2) 2D-partitioned kernels to strive a balance between computation and data transfer costs to PIM-enabled memory. Third, we compare SpMV execution on a real-world PIM system with 2528 PIM cores to state-of-the-art CPU and GPU systems to study the performance and energy efficiency of various devices. SparseP software package provides 25 SpMV kernels for real PIM systems supporting the four most widely used compressed matrix formats, and a wide range of data types. Our extensive evaluation provides new insights and recommendations for software designers and hardware architects to efficiently accelerate SpMV on real PIM systems.

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arXiv2021

Benchmarking Memory-Centric Computing Systems: Analysis of Real Processing-in-Memory Hardware

Many modern workloads such as neural network inference and graph processing are fundamentally memory-bound. For such workloads, data movement between memory and CPU cores imposes a significant overhead in terms of both latency and energy. A major reason is that this communication happens through a narrow bus with high latency and limited bandwidth, and the low data reuse in memory-bound workloads is insufficient to amortize the cost of memory access. Fundamentally addressing this data movement bottleneck requires a paradigm where the memory system assumes an active role in computing by integrating processing capabilities. This paradigm is known as processing-in-memory (PIM). Recent research explores different forms of PIM architectures, motivated by the emergence of new technologies that integrate memory with a logic layer, where processing elements can be easily placed. Past works evaluate these architectures in simulation or, at best, with simplified hardware prototypes. In contrast, the UPMEM company has designed and manufactured the first publicly-available real-world PIM architecture. The UPMEM PIM architecture combines traditional DRAM memory arrays with general-purpose in-order cores, called DRAM Processing Units (DPUs), integrated in the same chip. This paper presents key takeaways from the first comprehensive analysis of the first publicly-available real-world PIM architecture. We provide four key takeaways about the UPMEM PIM architecture, which stem from our study. More insights about suitability of different workloads to the PIM system, programming recommendations for software designers, and suggestions and hints for hardware and architecture designers of future PIM systems are available in arXiv:2105.03814

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arXiv2021

Benchmarking a New Paradigm: An Experimental Analysis of a Real Processing-in-Memory Architecture

Many modern workloads, such as neural networks, databases, and graph processing, are fundamentally memory-bound. For such workloads, the data movement between main memory and CPU cores imposes a significant overhead in terms of both latency and energy. A major reason is that this communication happens through a narrow bus with high latency and limited bandwidth, and the low data reuse in memory-bound workloads is insufficient to amortize the cost of main memory access. Fundamentally addressing this data movement bottleneck requires a paradigm where the memory system assumes an active role in computing by integrating processing capabilities. This paradigm is known as processing-in-memory (PIM). Recent research explores different forms of PIM architectures, motivated by the emergence of new 3D-stacked memory technologies that integrate memory with a logic layer where processing elements can be easily placed. Past works evaluate these architectures in simulation or, at best, with simplified hardware prototypes. In contrast, the UPMEM company has designed and manufactured the first publicly-available real-world PIM architecture. This paper provides the first comprehensive analysis of the first publicly-available real-world PIM architecture. We make two key contributions. First, we conduct an experimental characterization of the UPMEM-based PIM system using microbenchmarks to assess various architecture limits such as compute throughput and memory bandwidth, yielding new insights. Second, we present PrIM, a benchmark suite of 16 workloads from different application domains (e.g., linear algebra, databases, graph processing, neural networks, bioinformatics).

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arXiv2021

DAMOV: A New Methodology and Benchmark Suite for Evaluating Data Movement Bottlenecks

Data movement between the CPU and main memory is a first-order obstacle against improving performance, scalability, and energy efficiency in modern systems. Computer systems employ a range of techniques to reduce overheads tied to data movement, spanning from traditional mechanisms (e.g., deep multi-level cache hierarchies, aggressive hardware prefetchers) to emerging techniques such as Near-Data Processing (NDP), where some computation is moved close to memory. Our goal is to methodically identify potential sources of data movement over a broad set of applications and to comprehensively compare traditional compute-centric data movement mitigation techniques to more memory-centric techniques, thereby developing a rigorous understanding of the best techniques to mitigate each source of data movement. With this goal in mind, we perform the first large-scale characterization of a wide variety of applications, across a wide range of application domains, to identify fundamental program properties that lead to data movement to/from main memory. We develop the first systematic methodology to classify applications based on the sources contributing to data movement bottlenecks. From our large-scale characterization of 77K functions across 345 applications, we select 144 functions to form the first open-source benchmark suite (DAMOV) for main memory data movement studies. We select a diverse range of functions that (1) represent different types of data movement bottlenecks, and (2) come from a wide range of application domains. Using NDP as a case study, we identify new insights about the different data movement bottlenecks and use these insights to determine the most suitable data movement mitigation mechanism for a particular application. We open-source DAMOV and the complete source code for our new characterization methodology at https://github.com/CMU-SAFARI/DAMOV.

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arXiv2021

SynCron: Efficient Synchronization Support for Near-Data-Processing Architectures

Near-Data-Processing (NDP) architectures present a promising way to alleviate data movement costs and can provide significant performance and energy benefits to parallel applications. Typically, NDP architectures support several NDP units, each including multiple simple cores placed close to memory. To fully leverage the benefits of NDP and achieve high performance for parallel workloads, efficient synchronization among the NDP cores of a system is necessary. However, supporting synchronization in many NDP systems is challenging because they lack shared caches and hardware cache coherence support, which are commonly used for synchronization in multicore systems, and communication across different NDP units can be expensive. This paper comprehensively examines the synchronization problem in NDP systems, and proposes SynCron, an end-to-end synchronization solution for NDP systems. SynCron adds low-cost hardware support near memory for synchronization acceleration, and avoids the need for hardware cache coherence support. SynCron has three components: 1) a specialized cache memory structure to avoid memory accesses for synchronization and minimize latency overheads, 2) a hierarchical message-passing communication protocol to minimize expensive communication across NDP units of the system, and 3) a hardware-only overflow management scheme to avoid performance degradation when hardware resources for synchronization tracking are exceeded. We evaluate SynCron using a variety of parallel workloads, covering various contention scenarios. SynCron improves performance by 1.27$\times$ on average (up to 1.78$\times$) under high-contention scenarios, and by 1.35$\times$ on average (up to 2.29$\times$) under low-contention real applications, compared to state-of-the-art approaches. SynCron reduces system energy consumption by 2.08$\times$ on average (up to 4.25$\times$).

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arXiv2020

NATSA: A Near-Data Processing Accelerator for Time Series Analysis

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