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Ivan S. Novikov

Publications and source records attributed to Ivan S. Novikov.

18 recordsLinked to original sources

Low-rank approximation of Moment Tensor Potential enables reducing training set size without loss of accuracy

In this study, we implement a low-rank approximation of Moment Tensor Potential (MTP) based on the tensor train (TT) decomposition. The implemented tensor-factorized MTP (TFMTP) and the original MTP model are actively trained via a MaxVol-based algorithm during molecular dynamics simulations of a four-component molten salt mixture, LiF-NaF-KF (FLiNaK), and geometry optimizations of a five-component equiatomic MoNbTaWV random alloy. We demonstrate that under a 1.5-fold compression, TFMTP requires two times fewer configurations for fitting than the original MTP model, while maintaining an indistinguishable level of accuracy. These actively trained MTP and TFMTP models are further used to evaluate the density and viscosity of FLiNaK at temperatures ranging from 600 to 1200 K, as well as the elastic constants and bulk modulus of the MoNbTaWV alloy at zero temperature. For both atomic systems, the differences in physical properties predicted by MTP and TFMTP are negligible.

physics.chem-ph

Long-range machine-learning potentials with environment-dependent charges enable predicting LO-TO splitting and dielectric constants

We present two models with explicit long-range electrostatics in the form of Coulomb interactions. Both models include point charges depending on their local atomic environments, and the second model also conserves a total charge of an atomic system. We combine the proposed long-range models with local Moment Tensor Potential and demonstrate that they reduce the training errors of the MTP models fitted on the same training sets including the CH$_3$COO$^-$+4-methylphenol and CH$_3$COO$^-$+4-methylimidazole organic dimers (non-periodic systems) and the NaCl crystal (periodic system). For the organic dimers, the proposed models also give qualitatively correct predictions of the binding curves. Furthermore, in this study we introduce a method for calculating phonon spectra of isotropic materials only via these long-range models fitted to energies, forces, and stresses. The developed long-range model with point charges dependent on atomic environments and conserving total charge is capable of predicting the correct value of the LO-TO splitting in the $Γ$-point in the isotropic NaCl. For this system, we also predict dielectric constant from dipole moment fluctuations calculated with molecular dynamics simulations conducted with the developed long-range model. The calculated dielectric constant is in good agreement with experiment. Finally, we demonstrate the broader applicability of the introduced approach by computing the phonon spectrum of uniaxial tetragonal PbTiO$_3$. Although the method is formally derived for isotropic materials, we show that it is also perspective for uniaxial materials (e.g., PbTiO$_3$) as the spectrum obtained with our long-range interatomic potential corresponds to the one calculated with density functional theory.

physics.comp-ph

Active learning of collinear magnetic Moment Tensor Potentials using the spin-MLIP package from soft-constrained spin-polarized DFT calculations: a case study of Fe-Pd

Explicit incorporation of magnetic degrees of freedom in machine-learning interatomic potentials (magnetic MLIPs) plays a crucial role in the correct description of magnetic materials and their properties. An important ingredient for fitting of magnetic MLIPs is spin-polarized density functional theory (DFT) calculations with non-equilibrium magnetic moments, i.e. DFT calculations with constraints on magnetic moments. In this study, we present a workflow for active learning of magnetic Moment Tensor Potential (mMTP) during molecular dynamics (MD) simulations. Magnetic MTP and its active learning algorithm were implemented in the open-source spin-MLIP code, DFT soft-constrained spin-polarized calculations were performed with the VASP code, and MD simulations were conducted in the open-source LAMMPS code. We test our workflow on the Fe-Pd crystal. The dependencies of magnetization and density of states (DOSs) on the volume of a supercell (or, pressure) are in good agreement with those calculated with DFT. Furthermore, the calculated DOSs correspond to the experimental ones.

cond-mat.mtrl-sci

Low-rank matrix and tensor approximations for compression of machine-learning interatomic potentials

Machine-learning interatomic potentials (MLIPs) have become a mainstay in computationally-guided materials science, surpassing traditional force fields due to their flexible functional form and superior accuracy in reproducing physical properties of materials. This flexibility is achieved through mathematically-rigorous basis sets that describe interatomic interactions within a local atomic environment. The number of parameters in these basis sets influences both the size of the training dataset required and the computational speed of the MLIP. Consequently, compressing MLIPs by reducing the number of parameters is a promising route to more efficient simulations. In this work, we use low-rank matrix and tensor factorizations under fixed-rank constraints to achieve this compression. In addition, we demonstrate that an algorithm with automatic rank augmentation helps to find a deeper local minimum of the fitted potential. The methodology is mainly verified using the Moment Tensor Potential (MTP) model and benchmarked on multi-component systems: a Mo-Nb-Ta-W medium-entropy alloy, molten LiF-NaF-KF, and a glycine molecular crystal. The proposed approach achieves up to 50 % compression without any loss of MTP accuracy. We also demonstrate that the developed methodology is universal and can be applied to compress other MLIPs on the example of Atomic Cluster Expansion (ACE).

physics.chem-ph

Incorporating Coulomb interactions with fixed charges in Moment Tensor Potentials and Equivariant Tensor Network Potentials

In this work, we incorporate long-range electrostatic interactions in the form of the Coulomb model with fixed charges into the functional form of short-range machine-learning interatomic potentials (MLIPs), particularly in the Moment Tensor Potential and Equivariant Tensor Network potential. We show that explicit incorporation of the Coulomb interactions with fixed charges leads to a significant reduction of energy fitting errors, namely, more than four times, of short-range MLIPs trained on organic dimers of charged molecules. Furthermore, with our long-range models we demonstrate a significant improvement in the prediction of the binding curves of the organic dimers of charged molecules. Finally, we show that the results calculated with MLIPs are in good correspondence with those obtained with density functional theory for organic dimers of charged molecules.

physics.chem-ph

Moment Tensor Potential and Equivariant Tensor Network Potential with explicit dispersion interactions

In this study, we investigate the effect of incorporating explicit dispersion interactions in the functional form of machine learning interatomic potentials (MLIPs), particularly in the Moment Tensor Potential and Equivariant Tensor Network potential for accurate modeling of liquid carbon tetrachloride, methane, and toluene. We show that explicit incorporation of dispersion interactions via D2 and D3 corrections significantly improves the accuracy of MLIPs when the cutoff radius is set to a commonly used value of 5 -- 6 Å. We also show that for carbon tetrachloride and methane, a substantial improvement in accuracy can be achieved by extending the cutoff radius to 7.5 Å. However, for accurate modeling of toluene, explicit incorporation of dispersion remains important. Furthermore, we find that MLIPs incorporating dispersion interactions via D2 reach a close level of accuracy to those incorporating D3, and D2 is suitable for accurate modeling of the systems in the study, while being less computationally expensive. We evaluated the accuracy of MLIPs in dimer binding curves compared to ab initio data and in predicting density and radial distribution functions compared to experiments.

physics.chem-ph

Actively-trained magnetic Moment Tensor Potentials for mechanical, dynamical, and thermal properties of paramagnetic CrN

We present a protocol for automated fitting of magnetic Moment Tensor Potential explicitly including magnetic moments in its functional form. For the fitting of this potential we use energies, forces, stresses, and magnetic forces (negative derivatives of energies with respect to magnetic moments) of configurations selected with an active learning algorithm. These selected configurations are computed using constrained density functional theory, which enables calculating energies and their derivatives for both equilibrium and non-equilibrium (excited) magnetic states. We test our protocol on the system of B1-CrN and demonstrate that the automatically trained magnetic Moment Tensor Potential reproduces mechanical, dynamical, and thermal properties, of B1-CrN in the paramagnetic state with respect to density functional theory and experiments.

cond-mat.mtrl-sci

Quantum Modelling of Magnetism in Strongly Correlated Materials: Evaluating Constrained DFT and the Hubbard Model for Y114

Transition-metal compounds represent a fascinating playground for exploring the intricate relationship between structural distortions, electronic properties, and magnetic behaviour, holding significant promise for technological advancements. Among these compounds, YBaCo$_4$O$_{7}$ (Y114) is attractive due to its manifestation of a ferrimagnetic component at low temperature intertwined with distortion effect due to the charge disproportionation on Co ions, exerting profound impact on its magnetic properties. In this perspective paper, we study the structural and magnetic intricacies of the Y114 crystal using a novel first-principles methodology. Traditionally, the investigation of such materials has relied heavily on computational modelling using density-functional theory (DFT) with the on-site Coulomb interaction correction $U$ (DFT+$U$) based on the Hubbard model (sometimes including Hund's exchange coupling parameter $J$, DFT+$U$+$J$) to unravel their complexities. Herein, we analysed the spurious effects of magnetic-moment delocalisation and spillover to non-magnetic ions in the lattice on electronic structure and magnetic properties of Y114. To overcome this problem we have applied constrained DFT (cDFT) based on the potential self-consistency approach, and comprehensively explore the Y114 crystal's characteristics in its ferrimagnetic order. We find that cDFT yields magnetic moments of Co ions much closer to the experimental values than Hubbard model with the parameters $U$ and $J$ fitted to reproduce experimental lattice constants. cDFT allows for an accurate prediction of magnetic properties using oxidation states of magnetic ions as well-defined parameters. Through this perspective, we not only enhance our understanding of the magnetic interactions in Y114 crystal, but also pave the way for future investigations into magnetic materials.

cond-mat.str-el

Accelerating Structure Prediction of Molecular Crystals using Actively Trained Moment Tensor Potential

Inspired by the recent success of machine-learned interatomic potentials for crystal structure prediction of the inorganic crystals, we present a methodology that exploits Moment Tensor Potentials and active learning (based on maxvol algorithm) to accelerate structure prediction of molecular crystals. Benzene and glycine are used as test systems. Interestingly, among obtained low energy structures of benzene we have found a peculiar polymeric benzene structure.

cond-mat.mtrl-sci

Towards reliable calculations of thermal rate constants: ring polymer molecular dynamics for the OH + HBr $\to$ Br + H$_2$O reaction

We combined Moment Tensor Potential (MTP) and Ring Polymer Molecular Dynamics (RPMD) for calculating the thermal rate constants of the OH + HBr system. We used the active learning (AL) algorithm for constructing a training set during RPMD. We compared the obtained RPMD-AL-MTP rate constants with the ones previously calculated using the quasi-classical trajectories (QCT) and the POTLIB potential energy surface, and with the experimental ones. We demonstrated that the RPMD rate constants were systematically closer to the experimental rate constants than the QCT ones at 200 K, 300 K, and 500 K.

physics.chem-ph

Fitting to magnetic forces improves the reliability of magnetic Moment Tensor Potentials

We developed a method for fitting machine-learning interatomic potentials with magnetic degrees of freedom, namely, magnetic Moment Tensor Potentials (mMTP). The main feature of our method consists in fitting mMTP to magnetic forces (negative derivatives of energies with respect to magnetic moments) as obtained spin-polarized density functional theory calculations. We test our method on the bcc Fe-Al system with different compositions. Specifically, we calculate formation energies, equilibrium lattice parameter, and total cell magnetization. Our findings demonstrate an accurate correspondence between the values calculated with mMTP and those obtained by DFT at zero temperature. Additionally, using molecular dynamics, we estimate the finite-temperature lattice parameter and capture the cell expansion as was previously revealed in experiment. Furthermore, we demonstrate that fitting to magnetic forces increases the reliability of structure relaxation (or, equilibration), in the sense of ensuring that every relaxation run ends up with a successfully relaxed structure (the failure may otherwise be caused by falsely driving a configuration away from the region covered in the training set).

cond-mat.mtrl-sci

Interatomic Interaction Models for Magnetic Materials: Recent Advances

Atomistic modeling is a widely employed theoretical method of computational materials science. It has found particular utility in the study of magnetic materials. Initially, magnetic empirical interatomic potentials or spin-polarized density functional theory (DFT) served as the primary models for describing interatomic interactions in atomistic simulations of magnetic systems. Furthermore, in recent years, a new class of interatomic potentials known as magnetic machine-learning interatomic potentials (magnetic MLIPs) has emerged. These MLIPs combine the computational efficiency, in terms of CPU time, of empirical potentials with the accuracy of DFT calculations. In this review, our focus lies on providing a comprehensive summary of the interatomic interaction models developed specifically for investigating magnetic materials. We also delve into the various problem classes to which these models can be applied. Finally, we offer insights into the future prospects of interatomic interaction model development for the exploration of magnetic materials.

physics.atom-ph

Assessing Parameters for Ring Polymer Molecular Dynamics Simulations at Low Temperatures: DH+H Chemical Reaction

Ring polymer molecular dynamics (RPMD) is an accurate method for calculating thermal chemical reaction rates. It has recently been discovered that low-temperature calculations are strongly affected by the simulation parameters. Here, for the thermally activated reaction DH + H -> D + H2, we calculate the RPMD rate constants at T = 50, 100, and 300 K and demonstrate that for T >= 100 K the standard input parameters yield accurate results, but at low temperatures (e.g., 50 K) one must increase the asymptotic distance and force constant, and decrease the umbrella integration step.

physics.chem-ph

The MLIP package: Moment Tensor Potentials with MPI and Active Learning

The subject of this paper is the technology (the "how") of constructing machine-learning interatomic potentials, rather than science (the "what" and "why") of atomistic simulations using machine-learning potentials. Namely, we illustrate how to construct moment tensor potentials using active learning as implemented in the MLIP package, focusing on the efficient ways to sample configurations for the training set, how expanding the training set changes the error of predictions, how to set up ab initio calculations in a cost-effective manner, etc. The MLIP package (short for Machine-Learning Interatomic Potentials) is available at https://mlip.skoltech.ru/download/.

physics.comp-ph

Exploring Phononic Properties of Two-Dimensional Materials using Machine Learning Interatomic Potentials

Phononic properties are commonly studied by calculating force constants using the density functional theory (DFT) simulations. Although DFT simulations offer accurate estimations of phonon dispersion relations or thermal properties, but for low-symmetry and nanoporous structures the computational cost quickly becomes very demanding. Moreover, the computational setups may yield nonphysical imaginary frequencies in the phonon dispersion curves, impeding the assessment of phononic properties and the dynamical stability of the considered system. Here, we compute phonon dispersion relations and examine the dynamical stability of a large ensemble of novel materials and compositions. We propose a fast and convenient alternative to DFT simulations which derived from machine-learning interatomic potentials passively trained over computationally efficient ab-initio molecular dynamics trajectories. Our results for diverse two-dimensional (2D) nanomaterials confirm that the proposed computational strategy can reproduce fundamental thermal properties in close agreement with those obtained via the DFT approach. The presented method offers a stable, efficient, and convenient solution for the examination of dynamical stability and exploring the phononic properties of low-symmetry and porous 2D materials.

cond-mat.mtrl-sci

Ring Polymer Molecular Dynamics and Active Learning of Moment Tensor Potential for Gas-Phase Barrierless Reactions: Application to S + H2

Ring polymer molecular dynamics (RPMD) has proven to be an accurate approach for calculating thermal rate coefficients of various chemical reactions. For wider application of this methodology, efficient ways to generate the underlying full-dimensional potential energy surfaces (PESs) and the corresponding energy gradients are required. Recently, we have proposed a fully automated procedure based on combining the original RPMDrate code with active learning for PES on-the-fly using moment tensor potential and successfully applied it to two representative thermally activated chemical reactions [I. S. Novikov, Y. V. Suleimanov, A. V. Shapeev, Phys. Chem. Chem. Phys., 29503-29512 (2018)]. In this work, using a prototype insertion chemical reaction S + H$_2$, we show that this procedure works equally well for another class of chemical reactions. We find that the corresponding PES can be generated by fitting to less than 1500 automatically generated structures while the RPMD rate coefficients show deviation from the reference values within the typical convergence error of RPMDrate. We note that more structures are accumulated during the real-time propagation of the dynamic factor (the recrossing factor) as opposed to the previous study. We also observe that relatively flat free energy profile of the along the reaction coordinate before entering the complex-formation well can cause issues with locating the maximum of the free energy surface for less converged PESs. However, the final RPMD rate coefficient is independent of the position of the dividing surface that makes it invulnerable to this problem, keeping the total number of necessary structures within a few thousand. Our work concludes that, in future, the proposed methodology can be applied to realistic complex chemical reactions with various energy profiles.

physics.chem-ph

Improving accuracy of interatomic potentials: more physics or more data? A case study of silica

In this paper we test two strategies to improving the accuracy of machine-learning potentials, namely adding more fitting parameters thus making use of large volumes of available quantum-mechanical data, and adding a charge-equilibration model to account for ionic nature of the SiO2 bonding. To that end, we compare Moment Tensor Potentials (MTPs) and MTPs combined with the charge-equilibration (QEq) model (MTP+QEq) fitted to a density functional theory dataset of alpha-quartz SiO2-based structures. In order to make a meaningful comparison, in addition to the accuracy, we assess the uncertainty of predictions of each potential. It is shown that adding the QEq model to MTP does not make any improvement over the MTP potential alone, while adding more parameters does improve the accuracy and uncertainty of its predictions.

physics.comp-ph

Automated Calculation of Thermal Rate Coefficients using Ring Polymer Molecular Dynamics and Machine-Learning Interatomic Potentials with Active Learning

We propose a methodology for fully automated calculation of thermal rate coefficients of gas phase chemical reactions, which is based on combining the ring polymer molecular dynamics (RPMD) with the machine-learning interatomic potentials actively learning on-the-fly. Based on the original computational procedure implemented in the RPMDrate code, our methodology gradually and automatically constructs the potential energy surfaces (PESs) from scratch with the data set points being selected and accumulated during the RPMDrate simulation. Such an approach ensures that our final machine-learning model provides reliable description of the PES which avoids artifacts during exploration of the phase space by RPMD trajectories. We tested our methodology on two representative thermally activated chemical reactions studied recently by RPMDrate at temperatures within the interval of 300--1000~K. The corresponding PESs were generated by fitting to only a few thousands automatically generated structures (less than 5000) while the RPMD rate coefficients retained the deviation from the reference values within the typical convergence error of RPMDrate. In future, we plan to apply our methodology to chemical reactions which proceed via complex-formation thus providing a completely general tool for calculating RPMD thermal rate coefficients for any polyatomic gas phase chemical reaction.

physics.chem-ph