arXiv subjects

Izumi Takahara

Publications and source records attributed to Izumi Takahara.

9 recordsLinked to original sources

arXiv2026

Hypothesis-Driven Autonomous Materials Synthesis with Multimodal LLM Agents

Self-driving laboratories can explore synthesis conditions autonomously, but their decision-making layer is typically a black-box optimizer, and the output is a set of optimized samples, with the measurements reduced to predefined scalar objectives and the reasons behind success left unarticulated. Here we present SynAgent, a framework in which large language model agents operate an automated experimental system and maintain an explicit, revisable understanding of the synthesis process as the campaign's primary output. Starting with no predefined analysis pipeline, SynAgent adaptively generates analysis skills for newly acquired data and evolves this understanding through multimodal reasoning over experimental data such as X-ray diffraction patterns and electron micrographs. The evolution is guided by a verify-falsify scheme, in which the agent deliberately challenges its own hypotheses by testing conditions predicted to fail as well as those predicted to succeed. In a single campaign of 18 autonomous experiments using LiCoO2 (001) thin-film deposition as a testbed, SynAgent synthesized highly crystalline films and evolved an understanding of how the substrate temperature governs crystallization, discovering an abrupt threshold and a narrow optimal growth window at 650-690 °C. These results extend autonomous experimentation beyond optimized samples to testable, human-readable understanding.

cond-mat.mtrl-sci↗

arXiv2026

Toward Auditable AI Scientists: A Hypothesis Evolution Protocol for LLM Agents

Large language model (LLM) agents are increasingly expected to play a central role in AI-driven scientific discovery. Equipped with broad knowledge, flexible reasoning, and tool use, they have the potential to autonomously explore and solve scientific problems by repeatedly proposing hypotheses, testing them, and revising their beliefs in the light of the evidence. In current agents, however, these hypotheses, tests, and belief updates are buried in unstructured logs, and no mechanism lets the agent or the human researcher audit that process. Here we propose the Hypothesis Evolution Protocol (HEP), an agent harness that provides hypothesis generation, evaluation, and evolution as explicit, auditable operations. On materials-science research tasks, a HEP-equipped agent operates the hypothesis--test--evidence--belief cycle that planning-style agents lack, generalizes across research questions, and exploits the protocol more fully as the base LLM becomes more capable. These results mark a step toward auditable AI scientists, whose scientific reasoning can be inspected, verified, and built upon.

cs.AI↗

arXiv2026

Scale-Dependent Input Representation and Confidence Estimation for LLMs in Materials Property Prediction

Large language models (LLMs) are increasingly applied to materials science. However, the relationship between prediction accuracy, input representation, and model scale remains unclear, and reliable methods for assessing prediction confidence have not yet been established. In this study, we fine-tune two Llama models of different scales (1B and 8B) using low-rank adaptation (LoRA) on an inorganic crystal structure dataset. We systematically evaluate five input representations, namely chemical composition, crystal summary, local environment description, full text description, and crystallographic information files (CIF), for formation energy and bandgap prediction. Our results show that the optimal input representation depends on model scale. The 1B model performs better with compact representations, whereas the 8B model maintains high accuracy even with longer natural-language descriptions and CIF inputs. Across both model scales, crystal summaries that include space-group information consistently outperform composition-only inputs, indicating that symmetry information serves as a robust and informative feature. We further analyze the relationship between prediction error and the mean negative log-likelihood (mean NLL) of tokens corresponding to predicted numerical values. While no clear correlation is observed in base models, fine-tuned models exhibit a consistent trend in which lower mean NLL corresponds to smaller prediction errors. This result suggests that mean NLL can serve as a practical confidence indicator without requiring additional training. These findings demonstrate that both input representation and model scale play critical roles in LLM-based materials property prediction, and that mean NLL provides an effective and computationally efficient measure of prediction confidence.

cond-mat.mtrl-sci↗

arXiv2026

Inverse Materials Design via Joint Generation of Crystal Structures and Local Electronic Descriptors

Inverse design of inorganic crystals, in which structures are generated to satisfy a target property while preserving diversity and physical plausibility, remains more demanding than ab initio generation, as property conditioning can degrade the structural quality that current generative models otherwise achieve. We propose a diffusion framework that jointly denoises crystal-structure variables and site-resolved local electronic descriptors through a shared score network. As representative descriptors, we adopt Bader charge and atomic density of states (atomic DOS). Under both band-gap and formation energy conditioned generation, the joint models achieved higher success rates than the structure-only baseline in most target conditions, while simultaneously increasing the fraction of generated structures that satisfy uniqueness, novelty, thermodynamic stability, and physical validity (VSUN criteria). A dummy-variable control confirms that these gains originate from the electronic content of the descriptors rather than from auxiliary site-wise variables. The generated Bader charges agree with DFT references with an MAE of 5.5e-2 e on stable structures, and the generated atomic DOS captures the coarse spectral profile of the DFT reference around the modal accuracy range, although finer details and accuracy vary with elemental species. These results establish local electronic descriptors as effective generative variables that serve two complementary roles: broadening the explored materials space through increased structural diversity, and mitigating the trade-off between property targeting and structural quality by guiding the structural trajectory toward electronically plausible configurations during joint denoising.

cond-mat.mtrl-sci↗

arXiv2026

Generative Inverse Estimation of 3D Atomic Coordination from Near-Edge Spectra via Equivariant Diffusion Models

Extracting 3D atomic coordinates from spectroscopic data is a longstanding inverse problem. We present an equivariant diffusion model that generates site-specific 3D structures directly from near-edge spectra (ELNES/XANES). Trained on Si-O crystals, the model achieves radial accuracy comparable to Extended X-ray Absorption Fine Structure (EXAFS) (RMSD ~0.06 Å) but with superior coordination number precision (errors < 4.3% vs. EXAFS ~20%). Crucially, it reconstructs full 3D geometries including bond angles, overcoming the limitations of 1D radial distribution analysis. The model demonstrates robust out-of-distribution generalization, accurately predicting local structures in amorphous systems despite being trained exclusively on crystalline lattices. Application to experimental O K-edge spectra from α-quartz validates practical applicability. This generative approach outperforms template matching and establishes automated, quantitative 3D structure determination from spectroscopic data.

cond-mat.mtrl-sci↗

arXiv2026

Towards Agentic Intelligence for Materials Science

The convergence of artificial intelligence and materials science presents a transformative opportunity, but achieving true acceleration in discovery requires moving beyond task-isolated, fine-tuned models toward agentic systems that plan, act, and learn across the full discovery loop. This survey advances a unique pipeline-centric view that spans from corpus curation and pretraining, through domain adaptation and instruction tuning, to goal-conditioned agents interfacing with simulation and experimental platforms. Unlike prior reviews, we treat the entire process as an end-to-end system to be optimized for tangible discovery outcomes rather than proxy benchmarks. This perspective allows us to trace how upstream design choices-such as data curation and training objectives-can be aligned with downstream experimental success through effective credit assignment. To bridge communities and establish a shared frame of reference, we first present an integrated lens that aligns terminology, evaluation, and workflow stages across AI and materials science. We then analyze the field through two focused lenses: From the AI perspective, the survey details LLM strengths in pattern recognition, predictive analytics, and natural language processing for literature mining, materials characterization, and property prediction; from the materials science perspective, it highlights applications in materials design, process optimization, and the acceleration of computational workflows via integration with external tools (e.g., DFT, robotic labs). Finally, we contrast passive, reactive approaches with agentic design, cataloging current contributions while motivating systems that pursue long-horizon goals with autonomy, memory, and tool use. This survey charts a practical roadmap towards autonomous, safety-aware LLM agents aimed at discovering novel and useful materials.

cond-mat.mtrl-sci↗

arXiv2025

Accelerated Inorganic Materials Design with Generative AI Agents

Designing inorganic crystalline materials with tailored properties is critical to technological innovation, yet current generative computational methods often struggle to efficiently explore desired targets with sufficient interpretability. Here, we present MatAgent, a generative approach for inorganic materials discovery that harnesses the powerful reasoning capabilities of large language models (LLMs). By combining a diffusion-based generative model for crystal structure estimation with a predictive model for property evaluation, MatAgent uses iterative, feedback-driven guidance to steer material exploration precisely toward user-defined targets. Integrated with external cognitive tools-including short-term memory, long-term memory, the periodic table, and a comprehensive materials knowledge base-MatAgent emulates human expert reasoning to vastly expand the accessible compositional space. Our results demonstrate that MatAgent robustly directs exploration toward desired properties while consistently achieving high compositional validity, uniqueness, and material novelty. This framework thus provides a highly interpretable, practical, and versatile AI-driven solution to accelerate the discovery and design of next-generation inorganic materials.

cond-mat.mtrl-sci↗

arXiv2024

Generative Inverse Design of Crystal Structures via Diffusion Models with Transformers

Recent advances in deep learning have enabled the generation of realistic data by training generative models on large datasets of text, images, and audio. While these models have demonstrated exceptional performance in generating novel and plausible data, it remains an open question whether they can effectively accelerate scientific discovery through the data generation and drive significant advancements across various scientific fields. In particular, the discovery of new inorganic materials with promising properties poses a critical challenge, both scientifically and for industrial applications. However, unlike textual or image data, materials, or more specifically crystal structures, consist of multiple types of variables - including lattice vectors, atom positions, and atomic species. This complexity in data give rise to a variety of approaches for representing and generating such data. Consequently, the design choices of generative models for crystal structures remain an open question. In this study, we explore a new type of diffusion model for the generative inverse design of crystal structures, with a backbone based on a Transformer architecture. We demonstrate our models are superior to previous methods in their versatility for generating crystal structures with desired properties. Furthermore, our empirical results suggest that the optimal conditioning methods vary depending on the dataset.

cond-mat.mtrl-sci↗

arXiv2024

Crystal orbital overlap population based on all-electron ab initio simulation with numeric atom-centered orbitals and its application to chemical-bonding analysis in Li-intercalated layered materials

Crystal Orbital Overlap Population (COOP) is one of the effective tools for chemical-bonding analysis, and thus it has been utilized in the materials development and characterization. In this study, we developed a code to perform the COOP-based chemical-bonding analysis based on the wavefunction obtained from a first principles all-electron calculation with numeric atom-centered orbitals. The chemical-bonding analysis using the developed code was demonstrated for F2 and Si. Furthermore, we applied the method to analyze the chemical-bonding changes associated with a Li intercalation in three representative layered materials: graphite, MoS2, and ZrNCl, because of their great industrial importance, particularly for the applications in battery and superconducting materials. The COOP analysis provided some insights for understanding the intercalation mechanism and the stability of the intercalated materials from a chemical-bonding viewpoint.

cond-mat.mtrl-sci↗