arXiv subjects

Jérémy Rapin

Publications and source records attributed to Jérémy Rapin.

At least 19 recordsLinked to original sources

arXiv2026

Accurate Decoding of Natural Sentences from Non-Invasive Brain Recordings

Restoring communication for people who have lost the ability to speak or move after a brain injury is a major challenge. While intracranial implants now enable high-performing brain-computer-interfaces, non-invasive alternatives are still lagging behind. Here, we present Brain2Qwerty v2, a model that can decode the production of natural sentences solely from real-time magnetoencephalography (MEG) recordings. By collecting 22,000 sentences typed by nine subjects, each recorded for 10 hours, our model leverages character, word and sentence-level representations to achieve an average word error rate (WER) of 39%. For our best participant, the model accurately decodes half of the sentences with one word error or less. Critically, decoding accuracy log-linearly improves with data volume, suggesting that the performance gap with intracranial approaches could be partially bridged through data scaling. We show that AI enables this performance in three main ways: the substitution of hand-crafted pipelines for event detection with deep learning, the finetuning of large language models to extract semantic representations, and the deployment of AI agents to iteratively refine our decoding pipeline via automated code development. Together, these results show that non-invasive brain-to-text decoding starts to operate at a level of accuracy previously thought exclusive to surgical implants, opening a path toward safe and efficient brain-computer-interfaces.

cs.CL↗

arXiv2026

Misalignment Between Backpropagation and the Hierarchy of Brain Responses to Images

Backpropagation is the core learning mechanism underlying deep learning. However, whether and how this algorithm is implemented in the brain remains highly debated. In particular, while forward activations of pretrained models reliably map onto the cortical hierarchy of visual processing, it is unknown whether backpropagated gradients exhibit a similar correspondence. Here, we address this question using functional magnetic resonance imaging (fMRI) and magnetoencephalography (MEG) recordings of human brain responses to natural images. For this, we extend standard encoding analyses of forward activations to map backpropagated gradients onto neural data. Focusing on a recent self-supervised vision model (DINOv3) and reproducing results on eight vision models, we find that backpropagated gradients can reliably predict both fMRI and MEG signals, specifically in higher-level visual cortex and for later latencies. However, the spatial and temporal organization of these backpropagated gradients in the brain diverges from the patterns expected under a biologically plausible backpropagation mechanism: specifically, both the order in which gradients are computed and their spatial organization diverge from the temporal and spatial hierarchies of the human brain. Together, these results suggest that, although deep networks and the brain may share similar representational content, they likely rely on fundamentally different mechanisms to learn those representations.

q-bio.NC↗

arXiv2026

DANCE: Detect and Classify Events in EEG

Event identification in continuous neural recordings is a critical task in neuroscience. Decoding in EEG is dominated by classifying windows aligned to known event onsets. However, while available in controlled experiments, such onsets are absent in continuous real-world monitoring. Here, we introduce DANCE, a deep learning pipeline that frames neural decoding as a set-prediction problem and jointly detects and classifies events directly from raw, unaligned signals. Evaluated separately on ten datasets curated from the literature with a wide variety of event types (ranging from milliseconds to minutes in duration), our model outperforms existing methods on a broad range of cognitive, clinical and BCI tasks. This single architecture establishes a new state of the art in the competitive task of seizure monitoring and matches the accuracy of onset-informed models for BCI tasks. Overall, our method marks a step towards end-to-end asynchronous neural decoding models

cs.LG↗

arXiv2026

NeuralSet: A High-Performing Python Package for Neuro-AI

Artificial intelligence (AI) is increasingly central to understanding how the brain processes information. However, the integration of neuroscience and modern AI is bottlenecked by a fragmented software ecosystem. Current tools are siloed by recording modality and optimized for small-scale, in-memory workflows, limiting the use of massive, naturalistic datasets. Here, we introduce NeuralSet, a Python framework that efficiently unifies the processing of diverse neural recordings (including fMRI, M/EEG, and spikes) and complex experimental stimuli (such as text, audio, and video). By decoupling experimental metadata from lazy, memory-efficient data extraction, NeuralSet harmonizes standard neuroscientific preprocessing pipelines with pretrained deep learning embeddings. This approach provides a single PyTorch-ready interface that scales seamlessly from local prototyping to high-performance cluster execution. By eliminating manual data wrangling and ensuring full computational provenance, NeuralSet establishes a scalable, unified infrastructure for the next generation of neuro-AI research.

q-bio.NC↗

arXiv2026

NeuralBench: A Unifying Framework to Benchmark NeuroAI Models

Deep learning and large public datasets have recently catalyzed the proliferation of AI models for processing brain recordings. However, systematically evaluating these models remains a challenge: not only do the preprocessing pipelines, training and finetuning approaches largely vary across studies, but their downstream evaluation is often limited to small sets of tasks and/or datasets. Here, we present NeuralBench: a unified framework for benchmarking AI models of brain activity. We accompany this framework with NeuralBench-EEG v1.0 -- a large EEG benchmark that includes 36 electroencephalography (EEG) tasks and 14 deep learning architectures, and is evaluated on 94 datasets accessed through a standardized interface. This first EEG-focused release already highlights two main findings. First, current foundation models only marginally outperform task-specific models. Second, a large set of tasks (e.g. cognitive decoding, clinical predictions) remain highly challenging, even for the best models. Critically, NeuralBench is designed for the integration of new tasks, datasets, models, and neuroimaging modalities, as illustrated by preliminary extensions to MEG and fMRI datasets and models. Through this white paper, we invite the community to expand this open-source framework and work together toward a unified benchmarking standard for neuroimaging models.

cs.LG↗

arXiv2026

A foundation model of vision, audition, and language for in-silico neuroscience

Cognitive neuroscience is fragmented into specialized models, each tailored to specific experimental paradigms, hence preventing a unified model of cognition in the human brain. Here, we introduce TRIBE v2, a tri-modal (video, audio and language) foundation model capable of predicting human brain activity in a variety of naturalistic and experimental conditions. Leveraging a unified dataset of over 1,000 hours of fMRI across 720 subjects, we demonstrate that our model accurately predicts high-resolution brain responses for novel stimuli, tasks and subjects, superseding traditional linear encoding models, delivering several-fold improvements in accuracy. Critically, TRIBE v2 enables in silico experimentation: tested on seminal visual and neuro-linguistic paradigms, it recovers a variety of results established by decades of empirical research. Finally, by extracting interpretable latent features, TRIBE v2 reveals the fine-grained topography of multisensory integration. These results establish artificial intelligence as a unifying framework for exploring the functional organization of the human brain.

q-bio.NC↗

arXiv2026

Temporal structure of the language hierarchy within small cortical patches

Speech production requires the rapid coordination of a complex hierarchy of linguistic units, transforming a semantic representation into a precise sequence of articulatory movements. To unravel the neural mechanisms underlying this feat, we leverage recordings from eight 3.2 x 3.2 mm 64-microelectrode arrays implanted in the motor cortex and inferior frontal gyrus of two patients tasked to produce twenty thousand sentences. We show that a hierarchy of linguistic features are robustly encoded in most of these small cortical patches. Contrary to our expectations, instead of a clear macroscopic organization between patches, we observe a multiplexing of phonetic, syllabic and lexical representations within each cortical patch. Critically, this coding scheme dynamically changes over time to allow successive phonemes, syllables and words to be simultaneously represented without interference. Overall, these results, reminiscent of position encoding in transformers, show how small cortical patches organize the unfolding of the speech hierarchy during language production.

q-bio.NC↗

arXiv2025

Scaling and context steer LLMs along the same computational path as the human brain

Recent studies suggest that the representations learned by large language models (LLMs) are partially aligned to those of the human brain. However, whether and why this alignment score arises from a similar sequence of computations remains elusive. In this study, we explore this question by examining temporally-resolved brain signals of participants listening to 10 hours of an audiobook. We study these neural dynamics jointly with a benchmark encompassing 22 LLMs varying in size and architecture type. Our analyses confirm that LLMs and the brain generate representations in a similar order: specifically, activations in the initial layers of LLMs tend to best align with early brain responses, while the deeper layers of LLMs tend to best align with later brain responses. This brain-LLM alignment is consistent across transformers and recurrent architectures. However, its emergence depends on both model size and context length. Overall, this study sheds light on the sequential nature of computations and the factors underlying the partial convergence between biological and artificial neural networks.

cs.LG↗

arXiv2025

TRIBE: TRImodal Brain Encoder for whole-brain fMRI response prediction

Historically, neuroscience has progressed by fragmenting into specialized domains, each focusing on isolated modalities, tasks, or brain regions. While fruitful, this approach hinders the development of a unified model of cognition. Here, we introduce TRIBE, the first deep neural network trained to predict brain responses to stimuli across multiple modalities, cortical areas and individuals. By combining the pretrained representations of text, audio and video foundational models and handling their time-evolving nature with a transformer, our model can precisely model the spatial and temporal fMRI responses to videos, achieving the first place in the Algonauts 2025 brain encoding competition with a significant margin over competitors. Ablations show that while unimodal models can reliably predict their corresponding cortical networks (e.g. visual or auditory networks), they are systematically outperformed by our multimodal model in high-level associative cortices. Currently applied to perception and comprehension, our approach paves the way towards building an integrative model of representations in the human brain. Our code is available at https://github.com/facebookresearch/algonauts-2025.

cs.LG↗

arXiv2025

From Thought to Action: How a Hierarchy of Neural Dynamics Supports Language Production

Humans effortlessly communicate their thoughts through intricate sequences of motor actions. Yet, the neural processes that coordinate language production remain largely unknown, in part because speech artifacts limit the use of neuroimaging. To elucidate the unfolding of language production in the brain, we investigate with magnetoencephalography (MEG) and electroencephalography (EEG) the neurophysiological activity of 35 skilled typists, while they typed sentences on a keyboard. This approach confirms the hierarchical predictions of linguistic theories: the neural activity preceding the production of each word is marked by the sequential rise and fall of context-, word-, syllable-, and letter-level representations. Remarkably, each of these neural representations is maintained over long time periods within each level of the language hierarchy. This phenomenon results in a superposition of successive representations that is supported by a hierarchy of dynamic neural codes. Overall, these findings provide a precise computational breakdown of the neural dynamics that coordinate the production of language in the human brain.

q-bio.NC↗

arXiv2025

Brain-to-Text Decoding: A Non-invasive Approach via Typing

Modern neuroprostheses can now restore communication in patients who have lost the ability to speak or move. However, these invasive devices entail risks inherent to neurosurgery. Here, we introduce a non-invasive method to decode the production of sentences from brain activity and demonstrate its efficacy in a cohort of 35 healthy volunteers. For this, we present Brain2Qwerty, a new deep learning architecture trained to decode sentences from either electro- (EEG) or magneto-encephalography (MEG), while participants typed briefly memorized sentences on a QWERTY keyboard. With MEG, Brain2Qwerty reaches, on average, a character-error-rate (CER) of 32% and substantially outperforms EEG (CER: 67%). For the best participants, the model achieves a CER of 19%, and can perfectly decode a variety of sentences outside of the training set. While error analyses suggest that decoding depends on motor processes, the analysis of typographical errors suggests that it also involves higher-level cognitive factors. Overall, these results narrow the gap between invasive and non-invasive methods and thus open the path for developing safe brain-computer interfaces for non-communicating patients.

eess.SP↗

arXiv2025

Scaling laws for decoding images from brain activity

Generative AI has recently propelled the decoding of images from brain activity. How do these approaches scale with the amount and type of neural recordings? Here, we systematically compare image decoding from four types of non-invasive devices: electroencephalography (EEG), magnetoencephalography (MEG), high-field functional Magnetic Resonance Imaging (3T fMRI) and ultra-high field (7T) fMRI. For this, we evaluate decoding models on the largest benchmark to date, encompassing 8 public datasets, 84 volunteers, 498 hours of brain recording and 2.3 million brain responses to natural images. Unlike previous work, we focus on single-trial decoding performance to simulate real-time settings. This systematic comparison reveals three main findings. First, the most precise neuroimaging devices tend to yield the best decoding performances, when the size of the training sets are similar. However, the gain enabled by deep learning - in comparison to linear models - is obtained with the noisiest devices. Second, we do not observe any plateau of decoding performance as the amount of training data increases. Rather, decoding performance scales log-linearly with the amount of brain recording. Third, this scaling law primarily depends on the amount of data per subject. However, little decoding gain is observed by increasing the number of subjects. Overall, these findings delineate the path most suitable to scale the decoding of images from non-invasive brain recordings.

eess.IV↗

arXiv2024

Decoding individual words from non-invasive brain recordings across 723 participants

Deep learning has recently enabled the decoding of language from the neural activity of a few participants with electrodes implanted inside their brain. However, reliably decoding words from non-invasive recordings remains an open challenge. To tackle this issue, we introduce a novel deep learning pipeline to decode individual words from non-invasive electro- (EEG) and magneto-encephalography (MEG) signals. We train and evaluate our approach on an unprecedentedly large number of participants (723) exposed to five million words either written or spoken in English, French or Dutch. Our model outperforms existing methods consistently across participants, devices, languages, and tasks, and can decode words absent from the training set. Our analyses highlight the importance of the recording device and experimental protocol: MEG and reading are easier to decode than EEG and listening, respectively, and it is preferable to collect a large amount of data per participant than to repeat stimuli across a large number of participants. Furthermore, decoding performance consistently increases with the amount of (i) data used for training and (ii) data used for averaging during testing. Finally, single-word predictions show that our model effectively relies on word semantics but also captures syntactic and surface properties such as part-of-speech, word length and even individual letters, especially in the reading condition. Overall, our findings delineate the path and remaining challenges towards building non-invasive brain decoders for natural language.

eess.SP↗

arXiv2024

Code Llama: Open Foundation Models for Code

We release Code Llama, a family of large language models for code based on Llama 2 providing state-of-the-art performance among open models, infilling capabilities, support for large input contexts, and zero-shot instruction following ability for programming tasks. We provide multiple flavors to cover a wide range of applications: foundation models (Code Llama), Python specializations (Code Llama - Python), and instruction-following models (Code Llama - Instruct) with 7B, 13B, 34B and 70B parameters each. All models are trained on sequences of 16k tokens and show improvements on inputs with up to 100k tokens. 7B, 13B and 70B Code Llama and Code Llama - Instruct variants support infilling based on surrounding content. Code Llama reaches state-of-the-art performance among open models on several code benchmarks, with scores of up to 67% and 65% on HumanEval and MBPP, respectively. Notably, Code Llama - Python 7B outperforms Llama 2 70B on HumanEval and MBPP, and all our models outperform every other publicly available model on MultiPL-E. We release Code Llama under a permissive license that allows for both research and commercial use.

cs.CL↗

arXiv2024

Optimizing with Low Budgets: a Comparison on the Black-box Optimization Benchmarking Suite and OpenAI Gym

The growing ubiquity of machine learning (ML) has led it to enter various areas of computer science, including black-box optimization (BBO). Recent research is particularly concerned with Bayesian optimization (BO). BO-based algorithms are popular in the ML community, as they are used for hyperparameter optimization and more generally for algorithm configuration. However, their efficiency decreases as the dimensionality of the problem and the budget of evaluations increase. Meanwhile, derivative-free optimization methods have evolved independently in the optimization community. Therefore, we urge to understand whether cross-fertilization is possible between the two communities, ML and BBO, i.e., whether algorithms that are heavily used in ML also work well in BBO and vice versa. Comparative experiments often involve rather small benchmarks and show visible problems in the experimental setup, such as poor initialization of baselines, overfitting due to problem-specific setting of hyperparameters, and low statistical significance. With this paper, we update and extend a comparative study presented by Hutter et al. in 2013. We compare BBO tools for ML with more classical heuristics, first on the well-known BBOB benchmark suite from the COCO environment and then on Direct Policy Search for OpenAI Gym, a reinforcement learning benchmark. Our results confirm that BO-based optimizers perform well on both benchmarks when budgets are limited, albeit with a higher computational cost, while they are often outperformed by algorithms from other families when the evaluation budget becomes larger. We also show that some algorithms from the BBO community perform surprisingly well on ML tasks.

cs.LG↗

arXiv2023

Aligning brain functions boosts the decoding of visual semantics in novel subjects

Deep learning is leading to major advances in the realm of brain decoding from functional Magnetic Resonance Imaging (fMRI). However, the large inter-subject variability in brain characteristics has limited most studies to train models on one subject at a time. Consequently, this approach hampers the training of deep learning models, which typically requires very large datasets. Here, we propose to boost brain decoding by aligning brain responses to videos and static images across subjects. Compared to the anatomically-aligned baseline, our method improves out-of-subject decoding performance by up to 75%. Moreover, it also outperforms classical single-subject approaches when fewer than 100 minutes of data is available for the tested subject. Furthermore, we propose a new multi-subject alignment method, which obtains comparable results to that of classical single-subject approaches while improving out-of-subject generalization. Finally, we show that this method aligns neural representations in accordance with brain anatomy. Overall, this study lays the foundations for leveraging extensive neuroimaging datasets and enhancing the decoding of individuals with a limited amount of brain recordings.

cs.LG↗

arXiv2023

Decoding speech perception from non-invasive brain recordings

Decoding speech from brain activity is a long-awaited goal in both healthcare and neuroscience. Invasive devices have recently led to major milestones in that regard: deep learning algorithms trained on intracranial recordings now start to decode elementary linguistic features (e.g. letters, words, spectrograms). However, extending this approach to natural speech and non-invasive brain recordings remains a major challenge. Here, we introduce a model trained with contrastive-learning to decode self-supervised representations of perceived speech from the non-invasive recordings of a large cohort of healthy individuals. To evaluate this approach, we curate and integrate four public datasets, encompassing 175 volunteers recorded with magneto- or electro-encephalography (M/EEG), while they listened to short stories and isolated sentences. The results show that our model can identify, from 3 seconds of MEG signals, the corresponding speech segment with up to 41% accuracy out of more than 1,000 distinct possibilities on average across participants, and more than 80% in the very best participants - a performance that allows the decoding of words and phrases absent from the training set. The comparison of our model to a variety of baselines highlights the importance of (i) a contrastive objective, (ii) pretrained representations of speech and (iii) a common convolutional architecture simultaneously trained across multiple participants. Finally, the analysis of the decoder's predictions suggests that they primarily depend on lexical and contextual semantic representations. Overall, this effective decoding of perceived speech from non-invasive recordings delineates a promising path to decode language from brain activity, without putting patients at risk for brain surgery.

eess.AS↗

arXiv2023

Does Zero-Shot Reinforcement Learning Exist?

A zero-shot RL agent is an agent that can solve any RL task in a given environment, instantly with no additional planning or learning, after an initial reward-free learning phase. This marks a shift from the reward-centric RL paradigm towards "controllable" agents that can follow arbitrary instructions in an environment. Current RL agents can solve families of related tasks at best, or require planning anew for each task. Strategies for approximate zero-shot RL ave been suggested using successor features (SFs) [BBQ+ 18] or forward-backward (FB) representations [TO21], but testing has been limited. After clarifying the relationships between these schemes, we introduce improved losses and new SF models, and test the viability of zero-shot RL schemes systematically on tasks from the Unsupervised RL benchmark [LYL+21]. To disentangle universal representation learning from exploration, we work in an offline setting and repeat the tests on several existing replay buffers. SFs appear to suffer from the choice of the elementary state features. SFs with Laplacian eigenfunctions do well, while SFs based on auto-encoders, inverse curiosity, transition models, low-rank transition matrix, contrastive learning, or diversity (APS), perform unconsistently. In contrast, FB representations jointly learn the elementary and successor features from a single, principled criterion. They perform best and consistently across the board, reaching 85% of supervised RL performance with a good replay buffer, in a zero-shot manner.

cs.LG↗