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J. Howard

Publications and source records attributed to J. Howard.

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Classification of Mitral Regurgitation from Cardiac Cine MRI using Clinically-Interpretable Morphological Features

The assessment of mitral regurgitation (MR) using cardiac MRI, particularly Cine MRI, is a promising technique due to its wide availability. However, some of the temporal information available in clinical Cine MRI may not be fully utilised, as it requires detailed temporal analysis across different cardiac views. We propose a new approach to identify MR which automatically extracts 4-dimensional (3D + Time) morphological features from the reconstructed mitral annulus (MA) using Cine long-axis (LAX) views MRI. Our feature extraction involves locating the MA insertion points to derive the reconstructed MA geometry and displacements, resulting in a total of 187 candidate features. We identify the 25 most relevant mitral valve features using minimum-redundancy maximum-relevance (MRMR) feature selection technique. We then apply linear discriminant analysis (LDA) and random forest (RF) model to determine the presence of MR. Both LDA and RF demonstrate good performance, with accuracies of 0.72+/-0.05 and 0.73+/-0.09, respectively, in a 5-fold cross-validation analysis. This approach will be incorporated in an automatic tool to identify valvular diseases from Cine MRI by integrating both handcrafted and deep features. Our tool will facilitate the diagnosis of valvular disease from conventional cardiac MRI scans with no additional scanning or image analysis penalty. All code is made available on an open-source basis at: https://github.com/HenryOn2021/MA_Morphological_Features.

eess.IV

Automatic Aortic Valve Pathology Detection from 3-Chamber Cine MRI with Spatio-Temporal Attention Maps

The assessment of aortic valve pathology using magnetic resonance imaging (MRI) typically relies on blood velocity estimates acquired using phase contrast (PC) MRI. However, abnormalities in blood flow through the aortic valve often manifest by the dephasing of blood signal in gated balanced steady-state free precession (bSSFP) scans (Cine MRI). We propose a 3D classification neural network (NN) to automatically identify aortic valve pathology (aortic regurgitation, aortic stenosis, mixed valve disease) from Cine MR images. We train and test our approach on a retrospective clinical dataset from three UK hospitals, using single-slice 3-chamber cine MRI from N = 576 patients. Our classification model accurately predicts the presence of aortic valve pathology (AVD) with an accuracy of 0.85 +/- 0.03 and can also correctly discriminate the type of AVD pathology (accuracy: 0.75 +/- 0.03). Gradient-weighted class activation mapping (Grad-CAM) confirms that the blood pool voxels close to the aortic root contribute the most to the classification. Our approach can be used to improve the diagnosis of AVD and optimise clinical CMR protocols for accurate and efficient AVD detection.

eess.IV

Signature of topological crystalline insulating behavior in new B2X2Zn (X=Ir, Rh, Co) compound from first-principles Computation

Recent attempts at topological materials have revealed a large class of materials that show gapless surface states protected by time-reversal symmetry and crystal symmetries. Among them, topological insulating states protected by crystal symmetries, rather than time-reversal symmetry are classified as topological crystalline insulators. We computationally predict the signature of new three-dimensional topological crystalline insulating compounds of space group 139(I/4mmm). After conducting a full volume optimization process by allowing to rearrange of atomic positions and lattice parameters, the first principles calculation with a generalized gradient approximation is utilized to identify multiple Dirac-type crossings around X and P symmetric points near Fermi energy. Importantly the band inversion at point P is recognized. Further, We investigate the compound for topological crystalline insulating behavior and identify metallic surface states on high-symmetry crystal surfaces with the projection to the plane (001). Additionally, we performed formation energy, elastic properties, and phonon modes calculations to verify the structural, mechanical, and dynamical stability of the compounds. Therefore, we suggest the compounds for further investigation and experimental realization.

cond-mat.mtrl-sci

Measurement of the Cosmic Microwave Background Polarization Lensing Power Spectrum with the POLARBEAR experiment

Gravitational lensing due to the large-scale distribution of matter in the cosmos distorts the primordial Cosmic Microwave Background (CMB) and thereby induces new, small-scale $B$-mode polarization. This signal carries detailed information about the distribution of all the gravitating matter between the observer and CMB last scattering surface. We report the first direct evidence for polarization lensing based on purely CMB information, from using the four-point correlations of even- and odd-parity $E$- and $B$-mode polarization mapped over $\sim30$ square degrees of the sky measured by the POLARBEAR experiment. These data were analyzed using a blind analysis framework and checked for spurious systematic contamination using null tests and simulations. Evidence for the signal of polarization lensing and lensing $B$-modes is found at 4.2$σ$ (stat.+sys.) significance. The amplitude of matter fluctuations is measured with a precision of $27\%$, and is found to be consistent with the Lambda Cold Dark Matter ($Λ$CDM) cosmological model. This measurement demonstrates a new technique, capable of mapping all gravitating matter in the Universe, sensitive to the sum of neutrino masses, and essential for cleaning the lensing $B$-mode signal in searches for primordial gravitational waves.

astro-ph.CO

Motor regulation results in distal forces that bend partially disintegrated Chlamydomonas axonemes into circular arcs

The bending of cilia and flagella is driven by forces generated by dynein motor proteins. These forces slide adjacent microtubule doublets within the axoneme, the motile cytoskeletal structure. To create regular, oscilla- tory beating patterns, the activities of the axonemal dyneins must be coordinated both spatially and temporally. It is thought that coordination is mediated by stresses or strains, which build up within the moving axoneme, and somehow regulate dynein activity. While experimenting with axonemes subjected to mild proteolysis, we observed pairs of doublets associate with each other and form bends with almost constant curvature. By model- ing the statics of a pair of filaments, we show that the activity of the motors concentrates at the distal tips of the doublets. Furthermore, we show that this distribution of motor activity accords with models in which curvature, or curvature-induced normal forces, regulates the activity of the motors. These observations, together with our theoretical analysis, provide evidence that dynein activity can be regulated by curvature or normal forces, which may, therefore, play a role in coordinating the beating of cilia and flagella.

physics.bio-ph

3D Tomography of MHD Fluctuations in the H-1NF Heliac

A 3D tomographic reconstruction technique is described for inversion of a set of limited-angle high-resolution 2D visible light emission projections (extended in the vertical and toroidal directions) of global MHD eigenmodes in the H-1NF heliac. This paper deals with some of the features and challenges that arise in the application of tomographic imaging systems to toroidal devices, especially limited viewing access and the strong shaping of optimised stellarator/heliotron configurations. The fluctuations are represented as a finite sum of Fourier modes characterised by toroidal and poloidal mode numbers having fixed amplitude and phase in a set of nested cylindrical flux volumes in Boozer space. The complex amplitude is calculated using iterative tomographic inversion techniques such as ART, SIRT and standard linear least-squares methods. The tomography is applied to synchronous camera images of singly charged carbon impurity ion emission at 514nm obtained at three discrete poloidal viewing orientations. It is shown that the 2D amplitude and phase projections provide high quality reconstructions of the radial structure of the fluctuations that are compact in Boozer space and allow clear determination of the poloidal mode number as well as some degree of toroidal mode number differentiation.

physics.plasm-ph

A Measurement of the Cosmic Microwave Background B-Mode Polarization Power Spectrum at Sub-Degree Scales with POLARBEAR

We report a measurement of the B-mode polarization power spectrum in the cosmic microwave background (CMB) using the POLARBEAR experiment in Chile. The faint B-mode polarization signature carries information about the Universe's entire history of gravitational structure formation, and the cosmic inflation that may have occurred in the very early Universe. Our measurement covers the angular multipole range 500 < l < 2100 and is based on observations of an effective sky area of 25 square degrees with 3.5 arcmin resolution at 150 GHz. On these angular scales, gravitational lensing of the CMB by intervening structure in the Universe is expected to be the dominant source of B-mode polarization. Including both systematic and statistical uncertainties, the hypothesis of no B-mode polarization power from gravitational lensing is rejected at 97.1% confidence. The band powers are consistent with the standard cosmological model. Fitting a single lensing amplitude parameter A_BB to the measured band powers, A_BB = 1.12 +/- 0.61 (stat) +0.04/-0.12 (sys) +/- 0.07 (multi), where A_BB = 1 is the fiducial WMAP-9 LCDM value. In this expression, "stat" refers to the statistical uncertainty, "sys" to the systematic uncertainty associated with possible biases from the instrument and astrophysical foregrounds, and "multi" to the calibration uncertainties that have a multiplicative effect on the measured amplitude A_BB.

astro-ph.CO

Evidence for Gravitational Lensing of the Cosmic Microwave Background Polarization from Cross-correlation with the Cosmic Infrared Background

We reconstruct the gravitational lensing convergence signal from Cosmic Microwave Background (CMB) polarization data taken by the POLARBEAR experiment and cross-correlate it with Cosmic Infrared Background (CIB) maps from the Herschel satellite. From the cross-spectra, we obtain evidence for gravitational lensing of the CMB polarization at a statistical significance of 4.0$σ$ and evidence for the presence of a lensing $B$-mode signal at a significance of 2.3$σ$. We demonstrate that our results are not biased by instrumental and astrophysical systematic errors by performing null-tests, checks with simulated and real data, and analytical calculations. This measurement of polarization lensing, made via the robust cross-correlation channel, not only reinforces POLARBEAR auto-correlation measurements, but also represents one of the early steps towards establishing CMB polarization lensing as a powerful new probe of cosmology and astrophysics.

astro-ph.CO

The bolometric focal plane array of the Polarbear CMB experiment

The Polarbear Cosmic Microwave Background (CMB) polarization experiment is currently observing from the Atacama Desert in Northern Chile. It will characterize the expected B-mode polarization due to gravitational lensing of the CMB, and search for the possible B-mode signature of inflationary gravitational waves. Its 250 mK focal plane detector array consists of 1,274 polarization-sensitive antenna-coupled bolometers, each with an associated lithographed band-defining filter. Each detector's planar antenna structure is coupled to the telescope's optical system through a contacting dielectric lenslet, an architecture unique in current CMB experiments. We present the initial characterization of this focal plane.

astro-ph.IM

The POLARBEAR Experiment

We present the design and characterization of the POLARBEAR experiment. POLARBEAR will measure the polarization of the cosmic microwave background (CMB) on angular scales ranging from the experiment's 3.5 arcminute beam size to several degrees. The experiment utilizes a unique focal plane of 1,274 antenna-coupled, polarization sensitive TES bolometers cooled to 250 milliKelvin. Employing this focal plane along with stringent control over systematic errors, POLARBEAR has the sensitivity to detect the expected small scale B-mode signal due to gravitational lensing and search for the large scale B-mode signal from inflationary gravitational waves. POLARBEAR was assembled for an engineering run in the Inyo Mountains of California in 2010 and was deployed in late 2011 to the Atacama Desert in Chile. An overview of the instrument is presented along with characterization results from observations in Chile.

astro-ph.IM

Ultra High Energy Cosmology with POLARBEAR

Observations of the temperature anisotropy of the Cosmic Microwave Background (CMB) lend support to an inflationary origin of the universe, yet no direct evidence verifying inflation exists. Many current experiments are focussing on the CMB's polarization anisotropy, specifically its curl component (called "B-mode" polarization), which remains undetected. The inflationary paradigm predicts the existence of a primordial gravitational wave background that imprints a unique B-mode signature on the CMB's polarization at large angular scales. The CMB B-mode signal also encodes gravitational lensing information at smaller angular scales, bearing the imprint of cosmological large scale structures (LSS) which in turn may elucidate the properties of cosmological neutrinos. The quest for detection of these signals; each of which is orders of magnitude smaller than the CMB temperature anisotropy signal, has motivated the development of background-limited detectors with precise control of systematic effects. The POLARBEAR experiment is designed to perform a deep search for the signature of gravitational waves from inflation and to characterize lensing of the CMB by LSS. POLARBEAR is a 3.5 meter ground-based telescope with 3.8 arcminute angular resolution at 150 GHz. At the heart of the POLARBEAR receiver is an array featuring 1274 antenna-coupled superconducting transition edge sensor (TES) bolometers cooled to 0.25 Kelvin. POLARBEAR is designed to reach a tensor-to-scalar ratio of 0.025 after two years of observation -- more than an order of magnitude improvement over the current best results, which would test physics at energies near the GUT scale. POLARBEAR had an engineering run in the Inyo Mountains of Eastern California in 2010 and will begin observations in the Atacama Desert in Chile in 2011.

astro-ph.CO

The new generation CMB B-mode polarization experiment: POLARBEAR

We describe the Cosmic Microwave Background (CMB) polarization experiment called Polarbear. This experiment will use the dedicated Huan Tran Telescope equipped with a powerful 1,200-bolometer array receiver to map the CMB polarization with unprecedented accuracy. We summarize the experiment, its goals, and current status.

astro-ph.IM

Model Data Fusion: developing Bayesian inversion to constrain equilibrium and mode structure

Recently, a new probabilistic "data fusion" framework based on Bayesian principles has been developed on JET and W7-AS. The Bayesian analysis framework folds in uncertainties and inter-dependencies in the diagnostic data and signal forward-models, together with prior knowledge of the state of the plasma, to yield predictions of internal magnetic structure. A feature of the framework, known as MINERVA (J. Svensson, A. Werner, Plasma Physics and Controlled Fusion 50, 085022, 2008), is the inference of magnetic flux surfaces without the use of a force balance model. We discuss results from a new project to develop Bayesian inversion tools that aim to (1) distinguish between competing equilibrium theories, which capture different physics, using the MAST spherical tokamak; and (2) test the predictions of MHD theory, particularly mode structure, using the H-1 Heliac.

physics.plasm-ph

Configurational Effects on Alfvenic modes and Confinement in the H-1NF Heliac

The flexible Heliac coil set of helical axis stellarator H-1 (R=1m, ~0.15-0.2 m) permits access to a wide range of magnetic configurations. Surprisingly, in the absence of any obvious population of energetic particles, Alfven modes normally associated with energetic populations in larger fusion experiments are observed. Using H-1's unique combination of flexibility and advanced diagnostics, RF-generated plasma in H-1 is shown to have a very complex dependence on configuration of both the electron density and fluctuations in the MHD Alfven range. Magnetic fluctuations range from highly coherent, often multi-frequency, to approaching broad-band (df/f ~ 0.02-0.5), in the range 1-200 kHz. Application of datamining techniques to a wide range of configurations classifies these fluctuations and extracts poloidal and toroidal mode numbers, revealing that a significant class of fluctuations exhibit scaling which is i) Alfvenic with electron density (within a constant factor) and ii) shear Alfvenic in rotational transform. This is confirmed by scans within a single pulse, which can follow mode conversions. An array of optical and interferometric diagnostics is combined with the magnetic probe arrays to provide initial information on the internal structure of the MHD modes, and associated 3D effects. The configurational dependence is closely related to the presence of low order rational surfaces; density falls to very low values near, but not precisely at these rational values. Results from a uniquely accurate magnetic field mapping system, combined with a comprehensive model of the vacuum magnetic field in H-1 show that magnetic islands should not dominate the confinement of the configuration, and indicate that the dependence of density on configuration may be attributable to plasma generation effects.

physics.plasm-ph

The structure of electroweak corrections due to extended gauge symmetries

This paper studies models with extended electroweak gauge sectors of the form SU(2) x SU(2) x U(1) x [SU(2) or U(1)]. We establish the general behavior of corrections to precision electroweak observables in this class of theories and connect our results to previous work on specific models whose electroweak sectors are special cases of our extended group.

hep-ph