arXiv subjects

J. Johnson

Publications and source records attributed to J. Johnson.

At least 37 records · Page 2Linked to original sources

arXiv2022

Cosmogenic production of $^{37}$Ar in the context of the LUX-ZEPLIN experiment

We estimate the amount of $^{37}$Ar produced in natural xenon via cosmic ray-induced spallation, an inevitable consequence of the transportation and storage of xenon on the Earth's surface. We then calculate the resulting $^{37}$Ar concentration in a 10-tonne payload~(similar to that of the LUX-ZEPLIN experiment) assuming a representative schedule of xenon purification, storage and delivery to the underground facility. Using the spallation model by Silberberg and Tsao, the sea level production rate of $^{37}$Ar in natural xenon is estimated to be 0.024~atoms/kg/day. Assuming the xenon is successively purified to remove radioactive contaminants in 1-tonne batches at a rate of 1~tonne/month, the average $^{37}$Ar activity after 10~tonnes are purified and transported underground is 0.058--0.090~$μ$Bq/kg, depending on the degree of argon removal during above-ground purification. Such cosmogenic $^{37}$Ar will appear as a noticeable background in the early science data, while decaying with a 35~day half-life. This newly-noticed production mechanism of $^{37}$Ar should be considered when planning for future liquid xenon-based experiments.

hep-ex↗

arXiv2021

Projected sensitivity of the LUX-ZEPLIN (LZ) experiment to the two-neutrino and neutrinoless double beta decays of $^{134}$Xe

The projected sensitivity of the LUX-ZEPLIN (LZ) experiment to two-neutrino and neutrinoless double beta decay of $^{134}$Xe is presented. LZ is a 10-tonne xenon time projection chamber optimized for the detection of dark matter particles, that is expected to start operating in 2021 at Sanford Underground Research Facility, USA. Its large mass of natural xenon provides an exceptional opportunity to search for the double beta decay of $^{134}$Xe, for which xenon detectors enriched in $^{136}$Xe are less effective. For the two-neutrino decay mode, LZ is predicted to exclude values of the half-life up to 1.7$\times$10$^{24}$ years at 90% confidence level (CL), and has a three-sigma observation potential of 8.7$\times$10$^{23}$ years, approaching the predictions of nuclear models. For the neutrinoless decay mode LZ, is projected to exclude values of the half-life up to 7.3$\times$10$^{24}$ years at 90% CL.

physics.ins-det↗

arXiv2021

Projected sensitivities of the LUX-ZEPLIN (LZ) experiment to new physics via low-energy electron recoils

LUX-ZEPLIN (LZ) is a dark matter detector expected to obtain world-leading sensitivity to weakly interacting massive particles (WIMPs) interacting via nuclear recoils with a ~7-tonne xenon target mass. This manuscript presents sensitivity projections to several low-energy signals of the complementary electron recoil signal type: 1) an effective neutrino magnetic moment and 2) an effective neutrino millicharge, both for pp-chain solar neutrinos, 3) an axion flux generated by the Sun, 4) axion-like particles forming the galactic dark matter, 5) hidden photons, 6) mirror dark matter, and 7) leptophilic dark matter. World-leading sensitivities are expected in each case, a result of the large 5.6t 1000d exposure and low expected rate of electron recoil backgrounds in the $<$100keV energy regime. A consistent signal generation, background model and profile-likelihood analysis framework is used throughout.

hep-ex↗

arXiv2021

Enhancing the sensitivity of the LUX-ZEPLIN (LZ) dark matter experiment to low energy signals

Two-phase xenon detectors, such as that at the core of the forthcoming LZ dark matter experiment, use photomultiplier tubes to sense the primary (S1) and secondary (S2) scintillation signals resulting from particle interactions in their liquid xenon target. This paper describes a simulation study exploring two techniques to lower the energy threshold of LZ to gain sensitivity to low-mass dark matter and astrophysical neutrinos, which will be applicable to other liquid xenon detectors. The energy threshold is determined by the number of detected S1 photons; typically, these must be recorded in three or more photomultiplier channels to avoid dark count coincidences that mimic real signals. To lower this threshold: a) we take advantage of the double photoelectron emission effect, whereby a single vacuum ultraviolet photon has a $\sim20\%$ probability of ejecting two photoelectrons from a photomultiplier tube photocathode; and b) we drop the requirement of an S1 signal altogether, and use only the ionization signal, which can be detected more efficiently. For both techniques we develop signal and background models for the nominal exposure, and explore accompanying systematic effects, including the dependence on the free electron lifetime in the liquid xenon. When incorporating double photoelectron signals, we predict a factor of $\sim 4$ sensitivity improvement to the dark matter-nucleon scattering cross-section at $2.5$ GeV/c$^2$, and a factor of $\sim1.6$ increase in the solar $^8$B neutrino detection rate. Dropping the S1 requirement may allow sensitivity gains of two orders of magnitude in both cases. Finally, we apply these techniques to even lower masses by taking into account the atomic Migdal effect; this could lower the dark matter particle mass threshold to $80$ MeV/c$^2$.

astro-ph.IM↗

arXiv2020

Simulating topological domains in human chromosomes with a fitting-free model

We discuss a polymer model for the 3D organization of human chromosomes. A chromosome is represented by a string of beads, with each bead being "colored" according to 1D bioinformatic data (e.g., chromatin state, histone modification, GC content). Individual spheres (representing bi- and multi-valent transcription factors) can bind reversibly and selectively to beads with the appropriate color. During molecular dynamics simulations, the factors bind, and the string spontaneously folds into loops, rosettes, and topologically-associating domains (TADs). This organization occurs in the absence of any specified interactions between distant DNA segments, or between transcription factors. A comparison with Hi-C data shows that simulations predict the location of most boundaries between TADs correctly. The model is "fitting-free" in the sense that it does not use Hi-C data as an input; consequently, one of its strengths is that it can -- in principle -- be used to predict the 3D organization of any region of interest, or whole chromosome, in a given organism, or cell line, in the absence of existing Hi-C data. We discuss how this simple model might be refined to include more transcription factors and binding sites, and to correctly predict contacts between convergent CTCF binding sites.

physics.bio-ph↗

arXiv2020

Extrusion without a motor: a new take on the loop extrusion model of genome organization

Chromatin loop extrusion is a popular model for the formation of CTCF loops and topological domains. Recent HiC data have revealed a strong bias in favour of a particular arrangement of the CTCF binding motifs that stabilize loops, and extrusion is the only model to date which can explain this. However, the model requires a motor to generate the loops, and although cohesin is a strong candidate for the extruding factor, a suitable motor protein (or a motor activity in cohesin itself) has yet to be found. Here we explore a new hypothesis: that there is no motor, and thermal motion within the nucleus drives extrusion. Using theoretical modelling and computer simulations we ask whether such diffusive extrusion could feasibly generate loops. Our simulations uncover an interesting ratchet effect (where an osmotic pressure promotes loop growth), and suggest, by comparison to recent in vitro and in vivo measurements, that diffusive extrusion can in principle generate loops of the size observed in the data. Extra View on : C. A. Brackley, J. Johnson, D. Michieletto, A. N. Morozov, M. Nicodemi, P. R. Cook, and D. Marenduzzo "Non-equilibrium chromosome looping via molecular slip-links", Physical Review Letters 119, 138101 (2017)

physics.bio-ph↗

arXiv2020

Simulations of Events for the LUX-ZEPLIN (LZ) Dark Matter Experiment

The LUX-ZEPLIN dark matter search aims to achieve a sensitivity to the WIMP-nucleon spin-independent cross-section down to (1--2)$\times10^{-12}$\,pb at a WIMP mass of 40 GeV/$c^2$. This paper describes the simulations framework that, along with radioactivity measurements, was used to support this projection, and also to provide mock data for validating reconstruction and analysis software. Of particular note are the event generators, which allow us to model the background radiation, and the detector response physics used in the production of raw signals, which can be converted into digitized waveforms similar to data from the operational detector. Inclusion of the detector response allows us to process simulated data using the same analysis routines as developed to process the experimental data.

physics.ins-det↗

arXiv2020

Projected sensitivity of the LUX-ZEPLIN experiment to the $0νββ$ decay of $^{136}$Xe

The LUX-ZEPLIN (LZ) experiment will enable a neutrinoless double beta decay search in parallel to the main science goal of discovering dark matter particle interactions. We report the expected LZ sensitivity to $^{136}$Xe neutrinoless double beta decay, taking advantage of the significant ($>$600 kg) $^{136}$Xe mass contained within the active volume of LZ without isotopic enrichment. After 1000 live-days, the median exclusion sensitivity to the half-life of $^{136}$Xe is projected to be 1.06$\times$10$^{26}$ years (90% confidence level), similar to existing constraints. We also report the expected sensitivity of a possible subsequent dedicated exposure using 90% enrichment with $^{136}$Xe at 1.06$\times$10$^{27}$ years.

nucl-ex↗

arXiv2019

Measurement of the Gamma Ray Background in the Davis Cavern at the Sanford Underground Research Facility

Deep underground environments are ideal for low background searches due to the attenuation of cosmic rays by passage through the earth. However, they are affected by backgrounds from $γ$-rays emitted by $^{40}$K and the $^{238}$U and $^{232}$Th decay chains in the surrounding rock. The LUX-ZEPLIN (LZ) experiment will search for dark matter particle interactions with a liquid xenon TPC located within the Davis campus at the Sanford Underground Research Facility, Lead, South Dakota, at the 4,850-foot level. In order to characterise the cavern background, in-situ $γ$-ray measurements were taken with a sodium iodide detector in various locations and with lead shielding. The integral count rates (0--3300~keV) varied from 596~Hz to 1355~Hz for unshielded measurements, corresponding to a total flux in the cavern of $1.9\pm0.4$~$γ~$cm$^{-2}$s$^{-1}$. The resulting activity in the walls of the cavern can be characterised as $220\pm60$~Bq/kg of $^{40}$K, $29\pm15$~Bq/kg of $^{238}$U, and $13\pm3$~Bq/kg of $^{232}$Th.

physics.ins-det↗

arXiv2018

A stochastic model of supercoiling-dependent transcription

We propose a stochastic model for gene transcription coupled to DNA supercoiling, where we incorporate the experimental observation that polymerases create supercoiling as they unwind the DNA helix, and that these enzymes bind more favourably to regions where the genome is unwound. Within this model, we show that when the transcriptionally induced flux of supercoiling increases, there is a sharp crossover from a regime where torsional stresses relax quickly and gene transcription is random, to one where gene expression is highly correlated and tightly regulated by supercoiling. In the latter regime, the model displays transcriptional bursts, waves of supercoiling, and up-regulation of divergent or bidirectional genes. It also predicts that topological enzymes which relax twist and writhe should provide a pathway to down-regulate transcription. This article has been published in Physical Review Letters, May 2016.

physics.bio-ph↗

arXiv2016

Non-equilibrium chromosome looping via molecular slip-links

We propose a model for the formation of chromatin loops based on the diffusive sliding of a DNA-bound factor which can dimerise to form a molecular slip-link. Our slip-links mimic the behaviour of cohesin-like molecules, which, along with the CTCF protein, stabilize loops which organize the genome. By combining 3D Brownian dynamics simulations and 1D exactly solvable non-equilibrium models, we show that diffusive sliding is sufficient to account for the strong bias in favour of convergent CTCF-mediated chromosome loops observed experimentally. Importantly, our model does not require any underlying, and energetically costly, motor activity of cohesin. We also find that the diffusive motion of multiple slip-links along chromatin may be rectified by an intriguing ratchet effect that arises if slip-links bind to the chromatin at a preferred "loading site". This emergent collective behaviour is driven by a 1D osmotic pressure which is set up near the loading point, and favours the extrusion of loops which are much larger than the ones formed by single slip-links.

physics.bio-ph↗

arXiv2015

Binding of bivalent transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and domains

Biophysicists are modeling conformations of interphase chromosomes, often basing the strengths of interactions between segments distant on the genetic map on contact frequencies determined experimentally. Here, instead, we develop a fitting-free, minimal model: bivalent red and green "transcription factors" bind to cognate sites in runs of beads ("chromatin") to form molecular bridges stabilizing loops. In the absence of additional explicit forces, molecular dynamic simulations reveal that bound "factors' spontaneously cluster -- red with red, green with green, but rarely red with green -- to give structures reminiscent of transcription factories. Binding of just two transcription factors (or proteins) to active and inactive regions of human chromosomes yields rosettes, topological domains, and contact maps much like those seen experimentally. This emergent "bridging-induced attraction" proves to be a robust, simple, and generic force able to organize interphase chromosomes at all scales.

q-bio.BM↗

arXiv2015

Probing the stellar initial mass function with high-$z$ supernovae

The first supernovae will soon be visible at the edge of the observable universe, revealing the birthplaces of Population III stars. With upcoming near-infrared missions, a broad analysis of the detectability of high-$z$ supernovae is paramount. We combine cosmological and radiation transport simulations, instrument specifications, and survey strategies to create synthetic observations of primeval core-collapse, Type IIn and pair-instability supernovae with the James Webb Space Telescope ($JWST$). We show that a dedicated observational campaign with the $JWST$ can detect up to $\sim 15$ pair-instability explosions, $\sim 300$ core-collapse supernovae, but less than one Type IIn explosion per year, depending on the Population III star formation history. Our synthetic survey also shows that $\approx 1-2 \times10^2$ supernovae detections, depending on the accuracy of the classification, are sufficient to discriminate between a Salpeter and flat mass distribution for high redshift stars with a confidence level greater than 99.5 per cent. We discuss how the purity of the sample affects our results and how supervised learning methods may help to discriminate between CC and PI SNe.

astro-ph.CO↗

arXiv2015

The HARPS-N Rocky Planet Search I. HD219134b: A transiting rocky planet in a multi-planet system at 6.5 pc from the Sun

We present here the detection of a system of four low-mass planets around the bright (V=5.5) and close-by (6.5 pc) star HD219134. This is the first result of the Rocky Planet Search program with HARPS-N on the TNG in La Palma. The inner planet orbits the star in 3.0937 +/-0.0004 days, on a quasi-circular orbit with a semi-major axis of 0.0382 +/- 0.0003 AU. Spitzer observations allowed us to detect the transit of the planet in front of the star making HD219134b the nearest known transiting planet to date. From the amplitude of the radial-velocity variation (2.33 +/- 0.24 m/s) and observed depth of the transit (359 +/- 38 ppm), the planet mass and radius are estimated to be 4.46 +/- 0.47 M_{\oplus} and 1.606 +/- 0.086 R_{\oplus} leading to a mean density of 5.89 +/- 1.17 g/cc, suggesting a rocky composition. One additional planet with minimum mass of 2.67 +/- 0.59 M_{\oplus} moves on a close-in, quasi-circular orbit with a period of 6.765 +/- 0.005 days. The third planet in the system has a period of 46.78 +/- 0.16 days and a minimum mass of 8.7 +/- 1.1 M{\oplus}, at 0.234 +/- 0.002 AU from the star. Its eccentricity is 0.32 +/- 0.14. The period of this planet is close to the rotational period of the star estimated from variations of activity indicators (42.3 +/- 0.1 days). The planetary origin of the signal is, however, the preferred solution as no indication of variation at the corresponding frequency is observed for activity-sensitive parameters. Finally, a fourth additional longer-period planet of mass of 62 +/- 6 M_{\oplus} orbits the star in 1190 days, on an eccentric orbit (e=0.27 +/- 0.11) at a distance of 2.14 +/- 0.27 AU.

astro-ph.EP↗

arXiv2015

Oscillating red giants observed during Campaign 1 of the Kepler K2 mission: New prospects for galactic archaeology

NASA's re-purposed Kepler mission -- dubbed K2 -- has brought new scientific opportunities that were not anticipated for the original Kepler mission. One science goal that makes optimal use of K2's capabilities, in particular its 360-degree ecliptic field of view, is galactic archaeology -- the study of the evolution of the Galaxy from the fossil stellar record. The thrust of this research is to exploit high-precision, time-resolved photometry from K2 in order to detect oscillations in red giant stars. This asteroseismic information can provide estimates of stellar radius (hence distance), mass and age of vast numbers of stars across the Galaxy. Here we present the initial analysis of a subset of red giants, observed towards the North Galactic Gap, during the mission's first full science campaign. We investigate the feasibility of using K2 data for detecting oscillations in red giants that span a range in apparent magnitude and evolutionary state (hence intrinsic luminosity). We demonstrate that oscillations are detectable for essentially all cool giants within the $\log g$ range $\sim 1.9-3.2$. Our detection is complete down to $\mathit{Kp}\sim 14.5$, which results in a seismic sample with little or no detection bias. This sample is ideally suited to stellar population studies that seek to investigate potential shortcomings of contemporary Galaxy models.

astro-ph.GA↗

arXiv2015

Analysis of ZDDP content and thermal decomposition in motor oils using NAA and NMR

Zinc dialkyldithiophosphates (ZDDPs) are one of the most common anti-wear additives present in commercially-available motor oils. The ZDDP concentrations of motor oils are most commonly determined using inductively coupled plasma atomic emission spectroscopy (ICP-AES). As part of an undergraduate research project, we have determined the Zn concentrations of eight commercially-available motor oils and one oil additive using neutron activation analysis (NAA), which has potential for greater accuracy and less sensitivity to matrix effects as compared to ICP-AES. The 31P nuclear magnetic resonance (31P-NMR) spectra were also obtained for several oil additive samples which have been heated to various temperatures in order to study the thermal decomposition of ZDDPs.

cond-mat.mtrl-sci↗

arXiv2014

Proton spectroscopy of 48Ni, 46Fe, and 44Cr

Results of decay spectroscopy on nuclei in vicinity of the doubly magic 48Ni are presented. The measurements were performed with a Time Projection Chamber with optical readout which records tracks of ions and protons in the gaseous volume. Six decays of 48Ni including four events of two-proton ground-state radioactivity were recorded. An advanced reconstruction procedure yielded the 2p decay energy for 48Ni of Q2p = 1.29(4) MeV. In addition, the energy spectra of \b{eta}-delayed protons emitted in the decays of 44Cr and 46Fe, as well as half-lives and branching ratios were determined. The results were found to be consistent with the previous measurements made with Si detectors. A new proton line in the decay of 44Cr corresponding to the decay energy of 760 keV is reported. The first evidence for the \b{eta}2p decay of 46 Fe, based on one clear event, is shown.

nucl-ex↗

arXiv2014

The Catalina Surveys Periodic Variable Star Catalog

We present ~47,000 periodic variables found during the analysis of 5.4 million variable star candidates within a 20,000 square degree region covered by the Catalina Surveys Data Release-1 (CSDR1). Combining these variables with type-ab RR Lyrae from our previous work, we produce an on-line catalog containing periods, amplitudes, and classifications for ~61,000 periodic variables. By cross-matching these variables with those from prior surveys, we find that > 90% of the ~8,000 known periodic variables in the survey region are recovered. For these sources we find excellent agreement between our catalog and prior values of luminosity, period and amplitude, as well as classification. We investigate the rate of confusion between objects classified as contact binaries and type-c RR Lyrae (RRc's) based on periods, colours, amplitudes, metalicities, radial velocities and surface gravities. We find that no more than few percent of these variables in these classes are misidentified. By deriving distances for this clean sample of ~5,500 RRc's, we trace the path of the Sagittarius tidal streams within the Galactic halo. Selecting 146 outer-halo RRc's with SDSS radial velocities, we confirm the presence of a coherent halo structure that is inconsistent with current N-body simulations of the Sagittarius tidal stream. We also find numerous long-period variables that are very likely associated within the Sagittarius tidal streams system. Based on the examination of 31,000 contact binary light curves we find evidence for two subgroups exhibiting irregular lightcurves. One subgroup presents significant variations in mean brightness that are likely due to chromospheric activity. The other subgroup shows stable modulations over more than a thousand days and thereby provides evidence that the O'Connell effect is not due to stellar spots.

astro-ph.SR↗