arXiv subjects

JR Huml

Publications and source records attributed to JR Huml.

3 recordsLinked to original sources

arXiv2026

ZUNA1.1: A more flexible EEG foundation model for Denoising and Super-resolution

We introduce ZUNA1.1, a 380M-parameter diffusion autoencoder for flexible EEG signal reconstruction. ZUNA1.1 is capable of reconstructing variable length sequences of up to 30s, with an arbitrary number of EEG channels at arbitrary scalp locations, and can reconstruct arbitrary temporal intervals within channels in addition to reconstructing entire channels. We demonstrate that ZUNA1.1 performs at least on par with our earlier ZUNA1 model, while being far more flexible and capable of handling a wide range of reconstruction tasks. ZUNA1.1 continues to substantially outperform standard EEG denoising and reconstruction methods such as spherical spline interpolation, which is ubiquitously deployed in the MNE package. The ZUNA1.1 model is released open source under the permissive Apache 2.0 license.

cs.LG↗

arXiv2026

Computation-Aware Kalman Filtering with Model Selection for Neural Dynamics

Due to their explicit priors and ability to model uncertainty, Bayesian methods have played a major role in dynamical latent variable modeling of single-cell neural recordings. However, modern-sized datasets have made overparameterized deep networks the preferred methods of choice due to their predictive power and favorable computational scaling. While many posterior approximations exist, all incur approximation errors. Recent work accounts for this error in the form of computational uncertainty but comes at the cost of quadratic complexity and assumes fixed model hyperparameters. Here we extend this development to model selection, including a novel training loss and optimization scheme, which yields tractable inference in large state-spaces. We introduce a framework, the Computation-Aware State-Space Model (CASSM), specifically designed for the scale-imbalanced regime, where the number of trials is significantly lower than the number of recorded neurons. In this regime, for both synthetic and real data, we show that our method is competitive with data-hungry deep networks, with significantly improved uncertainty calibration over previous attempts to scale Bayesian methods. Our experiments provide a roadmap to neuroscience researchers in choosing from a host of potential dynamical latent variable models given key dataset properties and constraints.

stat.ML↗

arXiv2026

ZUNA: Flexible EEG Superresolution with Position-Aware Diffusion Autoencoders

We present \texttt{ZUNA}, a 380M-parameter masked diffusion autoencoder trained to perform masked channel infilling and superresolution for arbitrary electrode numbers and positions in EEG signals. The \texttt{ZUNA} architecture tokenizes multichannel EEG into short temporal windows and injects spatiotemporal structure via a 4D rotary positional encoding over (x,y,z,t), enabling inference on arbitrary channel subsets and positions. We train ZUNA on an aggregated and harmonized corpus spanning 208 public datasets containing approximately 2 million channel-hours using a combined reconstruction and heavy channel-dropout objective. We show that \texttt{ZUNA} substantially improves over ubiquitous spherical-spline interpolation methods, with the gap widening at higher dropout rates. Crucially, compared to other deep learning methods in this space, \texttt{ZUNA}'s performance \emph{generalizes} across datasets and channel positions allowing it to be applied directly to novel datasets and problems. Despite its generative capabilities, \texttt{ZUNA} remains computationally practical for deployment. We release Apache-2.0 weights and an MNE-compatible preprocessing/inference stack to encourage reproducible comparisons and downstream use in EEG analysis pipelines.

eess.SP↗