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Jack Neylon

Publications and source records attributed to Jack Neylon.

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Automated Dose-Based Anatomic Region Classification of Radiotherapy Treatment for Big Data Applications

Curation is a significant barrier to using 'big data' radiotherapy planning databases of 100,000+ patients. Anatomic site stratification is essential for downstream analyses, but current methods rely on inconsistent plan labels or target nomenclature, which is unreliable for multi-institutional data. We developed software to automate labeling by inferring anatomic regions directly from dose-volume overlap with deep-learning segmentations, eliminating metadata reliance. The software processes DICOM files in bulk, utilizing deep learning to segment 118 structures (organs, glands, and bones) categorized into six regions: Cranial, Head and Neck, Pelvis, Abdomen, Thorax, Extremity. The 85% and 50% isodose lines are converted to structures to compute organ-specific dose-overlap metrics. Plans are assigned ranked regional labels based on these intersections. The algorithm was refined using 109 expert-labeled cases and validated on 100 consecutive clinical plans. On the 100-plan test dataset, the algorithm achieved 91% Exact Accuracy (matching all expert labels and order), 94% Top-2 Accuracy (matching the top two expert regions regardless of order), and 95% Top-1 Accuracy (matching the primary expert label). The automated workflow demonstrated high accuracy and robustness. The 95% Top-1 Accuracy is particularly significant, as it enables reliable querying of plans based on the primary treatment site. Detailed analysis of the few mismatched cases showed most were treated areas at the border between anatomic regions and were ambiguous between these two regions in a common-sense interpretation. This algorithm provides a scalable, standardized solution for curating the large, multi-institutional datasets required for 'big data' in radiotherapy and provides an important complement to text-based approaches.

physics.med-ph

A generalized software framework for consolidation of radiotherapy planning and delivery data from diverse data sources

Aggregating large-scale radiotherapy planning and delivery data is crucial for advancing radiation oncology research and improving clinical practice, yet challenges persist due to the diversity of treatment planning systems (TPS), record and verify (R&V) systems, and complex data formats lacking standardized retrieval methods. We developed a robust software framework that automates the collection and integration of multi-institutional radiotherapy data from diverse TPS and R&V systems. By utilizing the unidirectional references of DICOM objects, our framework reconstructs complete patient datasets starting from Radiotherapy Treatment Records (RTRECORDs), managing tasks such as data queries, transfers, verification, and logging. It effectively maps DICOM linkages between RTRECORDs, RTPLANs, RTDOSEs, RTSTRUCTs, planning images, registrations, and associated diagnostic images, incorporating custom modules for data conversion and comprehensive error handling. Implemented across multiple institutions using various systems$-$ including ARIA, Eclipse, MOSAIQ, RayStation, MIM, Pinnacle$-$ the framework successfully collected data from two clinics over an 11-year period, aggregating data from 6,022 patients and 13,871 treatment plans with a success rate of 99.76% and an average processing time of approximately 18 minutes per patient. Ongoing efforts are extending data collection to clinics lacking DICOM Query/Retrieve capabilities, demonstrating the framework's adaptability to various clinical environments. This efficient automation of comprehensive data collection overcomes significant technical barriers, facilitating the creation of large-scale datasets that can accelerate advancements in radiation oncology.

physics.med-ph