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Jacob Trueb

Publications and source records attributed to Jacob Trueb.

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CORAL: A Modality Invariant Framework for Robust Vital Sign Rate Estimation Using Correloform Analysis

Heart rate and respiration rate are crucial vital signs. We present CORAL to address challenges in automating continuous vital sign monitoring 1) in-hospital across broader populations (age, disease states), 2) at-home in telehealth and wellbeing applications (noise, placement), and 3) across data modalities (ECG, PPG, SCG, BioZ, etc.). We re-introduce Short-Time Autocorrelation Functions (STACFs) to introduce the correloform - a highly interpretable 2D signal transformation for tracking periodicity over time - and define CORAL as a generic analytical framework for robust rate estimation of quasi-periodic signals. We rigorously benchmark CORAL to show ubiquitous application in biosignals via capabilities arising by mathematical construction rather than domain-specific engineering, including rate estimation, resilient noise handling, automatic channel selection, and signal quality indication. CORAL achieves excellent instantaneous noninvasive fetal HR agreement in FECGSYNDB (F1 = 0.999) and ADFECGDB (F1 = 1.000). With difficult NICU neonates, CORAL estimates RR from wearable BioZ at r = 0.858 against breath-interval RR from simultaneous wired Philips impedance. CORAL SCG HR on CEBS achieves r = 0.990 and in free-living activity r = 0.970 when compared against commercial ECG. Without QRS detection, CORAL's instantaneous HR agrees with Pan-Tompkins and NeuroKit2 detectors as closely as they agree with each other (MIMIC-IV ICU ECG r = 0.87 to each vs. 0.88 between them). CORAL's HR standard deviation correlates strongly with interval-based HRV SDNN, even from mechanical SCG (CEBS r = 0.733) and across an ICU ECG cohort (r = 0.768).

eess.SP

Beating the reaction limits of biosensor sensitivity with dynamic tracking of single binding events

The clinical need for ultra-sensitive molecular analysis has motivated the development of several endpoint assay technologies capable of single molecule readout. These endpoint assays are now primarily limited by the affinity and specificity of the molecular recognition agents for the analyte of interest. In contrast, a kinetic assay with single molecule readout could distinguish between low abundance, high affinity (specific analyte) and high abundance, low affinity (nonspecific background) binding by measuring the duration of individual binding events at equilibrium. Here we describe such a kinetic assay, in which individual binding events are detected and monitored during sample incubation. This method uses plasmonic gold nanorods and interferometric reflectance imaging to detect thousands of individual binding events across a multiplex solid phase sensor with a large area approaching that of leading bead-based endpoint assay technologies. A dynamic tracking procedure is used to measure the duration of each event. From this, the total rates of binding and de-binding as well as the distribution of binding event durations are determined. We observe a limit of detection of 15 femtomolar for a proof-of-concept synthetic DNA analyte in a 12-plex assay format.

physics.bio-ph