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Jaehan Bae

Publications and source records attributed to Jaehan Bae.

At least 91 records · Page 5Linked to original sources

Mapping the Complex Kinematic Substructure in the TW Hya Disk

We present ALMA observations of CO $J = 2-1$ and CS $J = 5-4$ emission from the disk around TW~Hydrae. Both molecules trace a predominantly Keplerian velocity structure, although a slowing of the rotation velocity is detected at the outer edge of the disk beyond ${\approx}~140$~au in CO emission. This was attributed to the enhanced pressure support from the gas density taper near the outer edge of the disk. Subtraction of an azimuthally symmetric background velocity structure reveals localized deviations in the gas kinematics traced by each of the molecules. Both CO and CS exhibit a `Doppler flip' feature, centered nearly along the minor axis of the disk (${\rm PA} \sim 60\degr$) at a radius of $1\farcs35$, coinciding with the large gap observed in scattered light and mm~continuum. In addition, the CO emission, both through changes in intensity and its kinematics, traces a tightly wound spiral, previously seen with higher frequency CO $J = 3-2$ observations (Teague et al., 2019). Through comparison with linear models of the spiral wakes generated by embedded planets, we interpret these features in the context of interactions with a Saturn-mass planet within the gap at a position angle of ${\rm PA} = 60\degr$, consistent with the theoretical predictions of (Mentiplay et al. 2019). The lack of a corresponding spiral in the CS emission is attributed to the strong vertical dependence on the buoyancy spirals which are believed to only grow in the atmospheric of the disk, rather than those traced by CS emission.

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Molecules with ALMA at Planet-forming Scales (MAPS). A Circumplanetary Disk Candidate in Molecular Line Emission in the AS 209 Disk

We report the discovery of a circumplanetary disk (CPD) candidate embedded in the circumstellar disk of the T Tauri star AS 209 at a radial distance of about 200 au (on-sky separation of 1."4 from the star at a position angle of $161^\circ$), isolated via $^{13}$CO $J=2-1$ emission. This is the first instance of CPD detection via gaseous emission capable of tracing the overall CPD mass. The CPD is spatially unresolved with a $117\times82$ mas beam and manifests as a point source in $^{13}$CO, indicating that its diameter is $\lesssim14$ au. The CPD is embedded within an annular gap in the circumstellar disk previously identified using $^{12}$CO and near-infrared scattered light observations, and is associated with localized velocity perturbations in $^{12}$CO. The coincidence of these features suggests that they have a common origin: an embedded giant planet. We use the $^{13}$CO intensity to constrain the CPD gas temperature and mass. We find that the CPD temperature is $\gtrsim35$ K, higher than the circumstellar disk temperature at the radial location of the CPD, 22 K, suggesting that heating sources localized to the CPD must be present. The CPD gas mass is $\gtrsim 0.095 M_{\rm Jup} \simeq 30 M_{\rm Earth}$ adopting a standard $^{13}$CO abundance. From the non-detection of millimeter continuum emission at the location of the CPD ($3σ$ flux density $\lesssim26.4~μ$Jy), we infer that the CPD dust mass is $\lesssim 0.027 M_{\rm Earth} \simeq 2.2$ lunar masses, indicating a low dust-to-gas mass ratio of $\lesssim9\times10^{-4}$. We discuss the formation mechanism of the CPD-hosting giant planet on a wide orbit in the framework of gravitational instability and pebble accretion.

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HST/WFC3 H$α$ Direct-Imaging Detection of a Point-like Source in the Disk Cavity of AB Aur

Accreting protoplanets enable the direct characterization of planet formation. As part of a high-contrast imaging search for accreting planets with the Hubble Space Telescope (HST) Wide Field Camera 3, we present H$α$ images of AB Aurigae (AB Aur), a Herbig Ae/Be star harboring a transition disk. The data were collected in two epochs of direct-imaging observations using the F656N narrow-band filter. After subtracting the point spread function of the primary star, we identify a point-like source located at a P.A. of $182.5^{\circ}\pm1.4^{\circ}$ and a separation of $600\pm22$~mas relative to the host star. The position is consistent with the recently identified protoplanet candidate AB Aur b. The source is visible in two individual epochs separated by ${\sim}50$ days and the H$α$ intensities in the two epochs agree. The H$α$ flux density is $F_ν=1.5\pm0.4$~mJy, $3.2\pm0.9$ times of the optical continuum determined by published HST/STIS photometry. In comparison to PDS 70 b and c, the H$α$ excess emission is weak. The central star is accreting and the stellar H$α$ emission has a similar line-to-continuum ratio as seen in AB Aur b. We conclude that both planetary accretion and scattered stellar light are possible sources of the H$α$ emission, and the H$α$ detection alone does not validate AB Aur b as an accreting protoplanet. Disentangling the origin of the emission will be crucial for probing planet formation in the AB Aur disk.

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Gemini-LIGHTS: Herbig Ae/Be and massive T-Tauri protoplanetary disks imaged with Gemini Planet Imager

We present the complete sample of protoplanetary disks from the Gemini- Large Imaging with GPI Herbig/T-tauri Survey (Gemini-LIGHTS) which observed bright Herbig Ae/Be stars and T-Tauri stars in near-infrared polarized light to search for signatures of disk evolution and ongoing planet formation. The 44 targets were chosen based on their near- and mid-infrared colors, with roughly equal numbers of transitional, pre-transitional, and full disks. Our approach explicitly did not favor well-known, "famous" disks or those observed by ALMA, resulting in a less-biased sample suitable to probe the major stages of disk evolution during planet formation. Our optimized data reduction allowed polarized flux as low as 0.002% of the stellar light to be detected, and we report polarized scattered light around 80% of our targets. We detected point-like companions for 47% of the targets, including 3 brown dwarfs (2 confirmed, 1 new), and a new super-Jupiter mass candidate around V1295 Aql. We searched for correlations between the polarized flux and system parameters, finding a few clear trends: presence of a companion drastically reduces the polarized flux levels, far-IR excess correlates with polarized flux for non-binary systems, and systems hosting disks with ring structures have stellar masses $<$ 3 Msun. Our sample also included four hot, dusty "FS CMa" systems and we detected large-scale ($>100$ au) scattered light around each, signs of extreme youth for these enigmatic systems. Science-ready images are publicly available through multiple distribution channels using a new FITS file standard jointly developed with members of the VLT/SPHERE team.

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Molecules with ALMA at Planet-forming Scales (MAPS) III: Characteristics of Radial Chemical Substructures

The Molecules with ALMA at Planet-forming Scales (MAPS) Large Program provides a detailed, high resolution (${\sim}$10-20 au) view of molecular line emission in five protoplanetary disks at spatial scales relevant for planet formation. Here, we present a systematic analysis of chemical substructures in 18 molecular lines toward the MAPS sources: IM Lup, GM Aur, AS 209, HD 163296, and MWC 480. We identify more than 200 chemical substructures, which are found at nearly all radii where line emission is detected. A wide diversity of radial morphologies - including rings, gaps, and plateaus - is observed both within each disk and across the MAPS sample. This diversity in line emission profiles is also present in the innermost 50 au. Overall, this suggests that planets form in varied chemical environments both across disks and at different radii within the same disk. Interior to 150 au, the majority of chemical substructures across the MAPS disks are spatially coincident with substructures in the millimeter continuum, indicative of physical and chemical links between the disk midplane and warm, elevated molecular emission layers. Some chemical substructures in the inner disk and most chemical substructures exterior to 150 au cannot be directly linked to dust substructure, however, which indicates that there are also other causes of chemical substructures, such as snowlines, gradients in UV photon fluxes, ionization, and radially-varying elemental ratios. This implies that chemical substructures could be developed into powerful probes of different disk characteristics, in addition to influencing the environments within which planets assemble. This paper is part of the MAPS special issue of the Astrophysical Journal Supplement.

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Disk Evolution Study Through Imaging of Nearby Young Stars (DESTINYS): A Panchromatic View of DO Tau's Complex Kilo-au Environment

While protoplanetary disks are often treated as isolated systems in planet formation models, observations increasingly suggest that vigorous interactions between Class II disks and their environments are not rare. DO Tau is a T Tauri star that has previously been hypothesized to have undergone a close encounter with the HV Tau system. As part of the DESTINYS ESO Large Programme, we present new VLT/SPHERE polarimetric observations of DO Tau and combine them with archival HST scattered light images and ALMA observations of CO isotopologues and CS to map a network of complex structures. The SPHERE and ALMA observations show that the circumstellar disk is connected to arms extending out to several hundred au. HST and ALMA also reveal stream-like structures northeast of DO Tau, some of which are at least several thousand au long. These streams appear not to be gravitationally bound to DO Tau, and comparisons with previous Herschel far-IR observations suggest that the streams are part of a bridge-like structure connecting DO Tau and HV Tau. We also detect a fainter redshifted counterpart to a previously known blueshifted CO outflow. While some of DO Tau's complex structures could be attributed to a recent disk-disk encounter, they might be explained alternatively by interactions with remnant material from the star formation process. These panchromatic observations of DO Tau highlight the need to contextualize the evolution of Class II disks by examining processes occurring over a wide range of size scales.

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CO Line Emission Surfaces and Vertical Structure in Mid-Inclination Protoplanetary Disks

High spatial resolution CO observations of mid-inclination (30-75°) protoplanetary disks offer an opportunity to study the vertical distribution of CO emission and temperature. The asymmetry of line emission relative to the disk major axis allows for a direct mapping of the emission height above the midplane, and for optically-thick, spatially-resolved emission in LTE, the intensity is a measure of the local gas temperature. Our analysis of ALMA archival data yields CO emission surfaces, dynamically-constrained stellar host masses, and disk atmosphere gas temperatures for the disks around: HD 142666, MY Lup, V4046 Sgr, HD 100546, GW Lup, WaOph 6, DoAr 25, Sz 91, CI Tau, and DM Tau. These sources span a wide range in stellar masses (0.50-2.10 M$_{\odot}$), ages (${\sim}$0.3-23 Myr), and CO gas radial emission extents (${\approx}$200-1000 au). This sample nearly triples the number of disks with mapped emission surfaces and confirms the wide diversity in line emitting heights ($z/r\approx0.1$ to ${\gtrsim}0.5$) hinted at in previous studies. We compute radial and vertical CO gas temperature distributions for each disk. A few disks show local temperature dips or enhancements, some of which correspond to dust substructures or the proposed locations of embedded planets. Several emission surfaces also show vertical substructures, which all align with rings and gaps in the millimeter dust. Combining our sample with literature sources, we find that CO line emitting heights weakly decline with stellar mass and gas temperature, which, despite large scatter, is consistent with simple scaling relations. We also observe a correlation between CO emission height and disk size, which is due to the flared structure of disks. Overall, CO emission surfaces trace ${\approx}2$-$5\times$ gas pressure scale heights (H$_{\rm{g}}$) and could potentially be calibrated as empirical tracers of H$_{\rm{g}}$.

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Gas and Dust Shadows in the TW Hydrae Disk

We present new observations of CO J=2-1 emission from the protoplanetary disk around TW Hya. Emission is detected out to 240 au (4") and found to exhibit azimuthal variations up to 20% beyond 180 au (3"), with the west side of the disk brighter than the east. This asymmetry is interpreted as tracing the shadow previously seen in scattered light. A reanalysis of the multi-epoch observations of the dust shadow in scattered light from Debes et al. (2017) suggests that an oscillatory motion would provide a better model of the temporal evolution of the dust shadow rather than orbital motion. Both models predict an angular offset between the dust shadow and the gas shadow of up to ~100 deg. We attribute this offset to the finite rate at which dust grains and gas molecules can exchange heat, dominated by the collisional rate between gas molecules and dust grains, $t_{\rm coll}$. The angular offsets derived are equivalent to collisional timescales that range from the near instantaneous up to $t_{\rm coll}$ ~ 10 years, depending on whether a straight or a curved dust shadow, as suggested by HST observations reported by Debes et al. (2017), is adopted. The inferred range of $t_{\rm coll}$ are consistent with those predictions based on representative gas densities, temperatures, gas-to-dust ratios and grain sizes. These results represent the first time empirical constraints can be placed on $t_{\rm coll}$.

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Anisotropic Infall and Substructure formation in Embedded Disks

The filamentary nature of accretion streams found around embedded sources suggest that protostellar disks experience heterogenous infall from the star-forming environment, consistent with the accretion behavior onto star-forming cores in top-down star-cluster formation simulations. This may produce disk substructures in the form of rings, gaps, and spirals continuing to be identified by high-resolution imaging surveys in both embedded Class 0/I and later Class II sources. We present a parameter study of anisotropic infall, informed by the properties of accretion flows onto protostellar cores in numerical simulations, and varying the relative specific angular momentum of incoming flows as well as their flow geometry. Our results show that anisotropic infall perturbs the disk and readily launches the Rossby wave instability (RWI). It forms vortices at the inner and outer edge of the infall zone where material is deposited. These vortices drive spiral waves and angular momentum transport, with some models able to drive stresses corresponding to a viscosity parameter on the order of $α\sim 10^{-2}$. The resulting azimuthal shear forms robust pressure bumps that act as barriers to radial drift of dust grains, as demonstrated by post-processing calculations of drift-dominated dust evolution. We discuss how a self-consistent model of anisotropic infall can account for the formation of millimeter rings in the outer disk as well as producing compact dust disks, consistent with observations of embedded sources.

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Scattering and sublimation: a multi-scale view of $μ$m-sized dust in the inclined disc of HD 145718

We present multi-instrument observations of the disc around the Herbig~Ae star, HD~145718, employing geometric and Monte Carlo radiative transfer models to explore the disc orientation, the vertical and radial extent of the near infrared (NIR) scattering surface, and the properties of the dust in the disc surface and sublimation rim. The disc appears inclined at $67-71^{\circ}$, with position angle, PA\,$=-1.0-0.6^{\circ}$, consistent with previous estimates. The NIR scattering surface extends out to $\sim75\,$au and we infer an aspect ratio, $h_{\rm{scat}}(r)/r\sim0.24$ in $J$-band; $\sim0.22$ in $H$-band. Our GPI images and VLTI+CHARA NIR interferometry suggest that the disc surface layers are populated by grains $\gtrsim λ/2π$ in size, indicating these grains are aerodynamically supported against settling and/or the density of smaller grains is relatively low. We demonstrate that our geometric analysis provides a reasonable assessment of the height of the NIR scattering surface at the outer edge of the disc and, if the inclination can be independently constrained, has the potential to probe the flaring exponent of the scattering surface in similarly inclined ($i\gtrsim70^{\circ}$) discs. In re-evaluating HD~145718's stellar properties, we found that the object's dimming events - previously characterised as UX~Or and dipper variability - are consistent with dust occultation by grains larger, on average, than found in the ISM. This occulting dust likely originates close to the inferred dust sublimation radius at $0.17\,$au.

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Self-consistent ring model in protoplanetary disks: temperature dips and substructure formation

Rings and gaps are ubiquitous in protoplanetary disks. Larger dust grains will concentrate in gaseous rings more compactly due to stronger aerodynamic drag. However, the effects of dust concentration on the ring's thermal structure have not been explored. Using MCRT simulations, we self-consistently construct ring models by iterating the ring's thermal structure, hydrostatic equilibrium, and dust concentration. We set up rings with two dust populations having different settling and radial concentration due to their different sizes. We find two mechanisms that can lead to temperature dips around the ring. When the disk is optically thick, the temperature drops outside the ring, which is the shadowing effect found in previous works adopting a single-dust population in the disk. When the disk is optically thin, a second mechanism due to excess cooling of big grains is found. Big grains cool more efficiently, which leads to a moderate temperature dip within the ring where big dust resides. This dip is close to the center of the ring. Such temperature dip within the ring can lead to particle pile-up outside the ring and feedback to the dust distribution and thermal structure. We couple the MCRT calculations with a 1D dust evolution model and show that the ring evolves to a different shape and may even separate to several rings. Overall, dust concentration within rings has moderate effects on the disk's thermal structure, and self-consistent model is crucial not only for protoplanetary disk observations but also for planetesimal and planet formation studies.

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Mapping the 3D Kinematical Structure of the Gas Disk of HD 169142

The disk around HD 169142 has been suggested to host multiple embedded planets due to the range of structures observed in the dust distributions. We analyze archival ALMA observations of $^{12} \mathrm{CO \ (2-1)}$, $^{13} \mathrm{CO \ (2-1)}$, and $\mathrm{C}^{18} \mathrm{O \ (2-1)}$ to search for large-scale kinematic structures associated with other embedded planets in the outer disk. At 125 au, we identify a coherent flow from the disk surface to the midplane, traced by all three CO isotopologues, and interpret it as a meridional flow, potentially driven by an embedded planet. We use changes in the rotation speed of the gas to characterize the physical structure across this region, finding that at 125 au the CO emission traces regions of increased gas pressure, despite being at a surface density minimum. Developing a simple analytical model, we demonstrate that the physical structure of the gap can have non-trivial responses to changes in the surface density, consistent both with previous thermo-chemical models, and the conditions inferred observationally. Applying this technique to a range of sources will allow us to directly confront theoretical models of gap-opening in protoplanetary disks.

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Molecules with ALMA at Planet-forming Scales (MAPS) II: CLEAN Strategies for Synthesizing Images of Molecular Line Emission in Protoplanetary Disks

The Molecules with ALMA at Planet-forming Scales large program (MAPS LP) surveyed the chemical structures of five protoplanetary disks across more than 40 different spectral lines at high angular resolution (0.15" and 0.30" beams for Bands 6 and 3, respectively) and sensitivity (spanning 0.3 - 1.3 mJy/beam and 0.4 - 1.9 mJy/beam for Bands 6 and 3, respectively). In this article, we describe our multi-stage workflow -- built around the CASA tclean image deconvolution procedure -- that we used to generate the core data product of the MAPS LP: the position-position-velocity image cubes for each spectral line. Owing to the expansive nature of the survey, we encountered a range of imaging challenges; some are familiar to the sub-mm protoplanetary disk community, like the benefits of using an accurate CLEAN mask, and others less well-known, like the incorrect default flux scaling of the CLEAN residual map first described in Jorsater & van Moorsel 1995 (the "JvM effect"). We distill lessons learned into recommended workflows for synthesizing image cubes of molecular emission. In particular, we describe how to produce image cubes with accurate fluxes via the "JvM correction," a procedure that is generally applicable to any image synthesized via CLEAN deconvolution but is especially critical for low S/N emission. We further explain how we used visibility tapering to promote a common, fiducial beam size and contextualize the interpretation of signal to noise ratio when detecting molecular emission from protoplanetary disks. This paper is part of the MAPS special issue of the Astrophysical Journal Supplement.

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Molecules with ALMA at Planet-forming Scales (MAPS) XVII: Determining the 2D Thermal Structure of the HD 163296 Disk

Understanding the temperature structure of protoplanetary disks is key to interpreting observations, predicting the physical and chemical evolution of the disk, and modeling planet formation processes. In this study, we constrain the two-dimensional thermal structure of the disk around Herbig Ae star HD 163296. Using the thermo-chemical code RAC2D, we derive a thermal structure that reproduces spatially resolved ALMA observations (~0.12 arcsec (13 au) - 0.25 arcsec (26 au)) of CO J = 2-1, 13CO J = 1-0, 2-1, C18O J = 1-0, 2-1, and C17O J = 1-0, the HD J = 1-0 flux upper limit, the spectral energy distribution (SED), and continuum morphology. The final model incorporates both a radial depletion of CO motivated by a time scale shorter than typical CO gas-phase chemistry (0.01 Myr) and an enhanced temperature near the surface layer of the the inner disk (z/r <= 0.21). This model agrees with the majority of the empirically derived temperatures and observed emitting surfaces derived from the J = 2-1 CO observations. We find an upper limit for the disk mass of 0.35 Msun, using the upper limit of the HD J = 1-0 and J = 2-1 flux. With our final thermal structure, we explore the impact that gaps have on the temperature structure constrained by observations of the resolved gaps. Adding a large gap in the gas and small dust additionally increases gas temperature in the gap by only 5-10%. This paper is part of the MAPS special issue of the Astrophysical Journal Supplement.

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Molecules with ALMA at Planet-forming Scales (MAPS) V: CO gas distributions

Here we present high resolution (15-24 au) observations of CO isotopologue lines from the Molecules with ALMA on Planet-forming Scales (MAPS) ALMA Large Program. Our analysis employs $^{13}$CO and C$^{18}$O ($J$=2-1), (1-0), and C$^{17}$O (1-0) line observations of five protoplanetary disks. We retrieve CO gas density distributions, using three independent methods: (1) a thermo-chemical modeling framework based on the CO data, the broadband spectral energy distribution, and the mm-continuum emission; (2) an empirical temperature distribution based on optically thick CO lines; and (3) a direct fit to the C$^{17}$O hyperfine lines. Results from these methods generally show excellent agreement. The CO gas column density profiles of the five disks show significant variations in the absolute value and the radial shape. Assuming a gas-to-dust mass ratio of 100, all five disks have a global CO-to-H$_2$ abundance of 10-100 times lower than the ISM ratio. The CO gas distributions between 150-400 au match well with models of viscous disks, supporting the long-standing theory. CO gas gaps appear to be correlated with continuum gap locations, but some deep continuum gaps do not have corresponding CO gaps. The relative depths of CO and dust gaps are generally consistent with predictions of planet-disk interactions, but some CO gaps are 5-10 times shallower than predictions based on dust gaps. This paper is part of the MAPS special issue of the Astrophysical Journal Supplement.

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Molecules with ALMA at Planet-forming Scales (MAPS) XIV: Revealing disk substructures in multi-wavelength continuum emission

Constraining dust properties of planet-forming disks via high angular resolution observations is fundamental to understanding how solids are trapped in substructures and how dust growth may be favored or accelerated therein. We use ALMA dust continuum observations of the Molecules with ALMA at Planet-forming Scales (MAPS) disks and explore a large parameter space to constrain the radial distribution of solid mass and maximum grain size in each disk, including or excluding dust scattering. In the nonscattering model, the dust surface density and maximum grain size profiles decrease from the inner disks to the outer disks, with local maxima at the bright ring locations, as expected from dust trapping models. The inferred maximum grain sizes from the inner to outer disks decrease from ~1 cm to 1 mm. For IM Lup, HD 163296, and MWC 480 in the scattering model, two solutions are compatible with their observed inner disk emission: one solution corresponding to a maximum grain size of a few millimeters (similar to the nonscattering model), and the other corresponding to a few hundred micrometer sizes. Based on the estimated Toomre parameter, only IM Lup -- which shows a prominent spiral morphology in millimeter dust -- is found to be gravitationally unstable. The estimated maximum Stokes number in all the disks lies between 0.01 and 0.3, and the estimated turbulence parameters in the rings of AS 209 and HD 163296 are close to the threshold where dust growth is limited by turbulent fragmentation. This paper is part of the MAPS special issue of the Astrophysical Journal Supplement.

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Molecules with ALMA at Planet-forming Scales (MAPS XVIII): Kinematic Substructures in the Disks of HD 163296 and MWC 480

We explore the dynamical structure of the protoplanetary disks surrounding HD 163296 and MWC 480 as part of the Molecules with ALMA at Planet Forming Scales (MAPS) large program. Using the $J = 2-1$ transitions of $^{12}$CO, $^{13}$CO and C$^{18}$O imaged at spatial resolutions of $\sim 0.^{\prime \prime}15$ and with a channel spacing of $200$ ${\rm m\,s^{-1}}$, we find perturbations from Keplerian rotation in the projected velocity fields of both disks ($\lesssim\!5\%$ of the local Keplerian velocity), suggestive of large-scale (10s of au in size), coherent flows. By accounting for the azimuthal dependence on the projection of the velocity field, the velocity fields were decomposed into azimuthally averaged orthogonal components, $v_ϕ$, $v_r$ and $v_z$. Using the optically thick $^{12}$CO emission as a probe of the gas temperature, local variations of $\approx\! 3$ K ($\approx\! 5 \%$ relative changes) were observed and found to be associated with the kinematic substructures. The MWC 480 disk hosts a suite of tightly wound spiral arms. The spirals arms, in conjunction with the highly localized perturbations in the gas velocity structure (kinematic planetary signatures), indicate a giant planet, $\sim\! 1$ $M_{\rm Jup}$, at a radius of $\approx 245$ au. In the disk of HD 163296, the kinematic substructures were consistent with previous studies of Pinte et al. (2018a) and Teague et al. (2018a) advocating for multiple $\sim\! 1$ $M_{\rm Jup}$ planets embedded in the disk. These results demonstrate that molecular line observations that characterize the dynamical structure of disks can be used to search for the signatures of embedded planets. This paper is part of the MAPS special issue of the Astrophysical Journal Supplement.

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Molecules with ALMA at Planet-forming Scales (MAPS) IV: Emission Surfaces and Vertical Distribution of Molecules

The Molecules with ALMA at Planet-forming Scales (MAPS) Large Program provides a unique opportunity to study the vertical distribution of gas, chemistry, and temperature in the protoplanetary disks around IM Lup, GM Aur, AS 209, HD 163296, and MWC 480. By using the asymmetry of molecular line emission relative to the disk major axis, we infer the emission height ($z$) above the midplane as a function of radius ($r$). Using this method, we measure emitting surfaces for a suite of CO isotopologues, HCN, and C$_2$H. We find that $^{12}$CO emission traces the most elevated regions with $z/r > 0.3$, while emission from the less abundant $^{13}$CO and C$^{18}$O probes deeper into the disk at altitudes of $z/r \lesssim 0.2$. C$_2$H and HCN have lower opacities and SNRs, making surface fitting more difficult, and could only be reliably constrained in AS 209, HD 163296, and MWC 480, with $z/r \lesssim 0.1$, i.e., relatively close to the planet-forming midplanes. We determine peak brightness temperatures of the optically thick CO isotopologues and use these to trace 2D disk temperature structures. Several CO temperature profiles and emission surfaces show dips in temperature or vertical height, some of which are associated with gaps and rings in line and/or continuum emission. These substructures may be due to local changes in CO column density, gas surface density, or gas temperatures, and detailed thermo-chemical models are necessary to better constrain their origins and relate the chemical compositions of elevated disk layers with those of planet-forming material in disk midplanes. This paper is part of the MAPS special issue of the Astrophysical Journal Supplement.

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