arXiv subjects

Jakob Simeth

Publications and source records attributed to Jakob Simeth.

14 recordsLinked to original sources

arXiv2024

dabih -- encrypted data storage and sharing platform

Background: The secure management of sensitive clinical data, particularly human genomics data, has become a critical requirement in modern biomedical research. Although the necessary software and algorithms are readily available, their use by non-IT experts poses significant challenges. Methods: We developed dabih, an open-source web application specifically designed to facilitate user-friendly encrypted data management. dabih enables web-based uploading, storing, sharing, and downloading of sensitive data in any format. Its approach to data security involves a two-stage envelope encryption process. We combine symmetric-key encryption for data and public-key encryption as key encapsulation mechanism. The private key necessary for decrypting the data remains exclusively on the owner's device. Thus, accessing data is impossible without explicit permission from the keyholder. Results: dabih is available open-source on GitHub https://github.com/spang-lab/dabih, as ready to use containers on docker hub and includes a command line interface and a graphical bulk upload tool as pre-built binaries. Documentation is available as part of the web application. Conclusions: dabih enables everyone to use strong cryptography for their data, while being just as simple to use as other, non-encrypted, data storage solutions. All the cryptography occurs seamlessly in the background as users interact with a secure web portal, simply by dragging and dropping files.

cs.CR↗

arXiv2022

Scale setting and the light baryon spectrum in $N_f=2+1$ QCD with Wilson fermions

We determine the light baryon spectrum on ensembles generated by the Coordinated Lattice Simulations (CLS) effort, employing $N_f=2+1$ flavours of non-perturbatively improved Wilson fermions. The hadron masses are interpolated and extrapolated within the quark mass plane, utilizing three distinct trajectories, two of which intersect close to the physical quark mass point and the third one approaching the SU(3) chiral limit. The results are extrapolated to the continuum limit, utilizing six different lattice spacings ranging from $a\approx 0.10\,$fm down to below $0.04\,$fm. The light pion mass varies from $M_{\pi}\approx 429\,$MeV down to $127\,$MeV. In general, the spatial extent is kept larger than four times the inverse pion mass and larger than $2.3\,$fm, with additional small and large volume ensembles to investigate finite size effects. We determine the Wilson flow scales $\sqrt{t_{0,{\rm ph}}}=0.1449^{(7)}_{(9)}\,$fm and $t_0^*\approx t_{0,{\rm ph}}$ from the octet cascade ($\Xi$ baryon). Determining the light baryon spectrum in the continuum limit, we find the nucleon mass $m_N=941.7^{(6.5)}_{(7.6)}\,$MeV and the other stable baryon masses to agree with their experimental values within sub-percent level uncertainties. Moreover, we determine SU(3) and SU(2) chiral perturbation theory low energy constants, including the octet and the $\Omega$ baryon sigma~terms $\sigma_{\pi N}=43.9(4.7)\,$MeV, $\sigma_{\pi\Lambda}=28.2^{(4.3)}_{(5.4)}\,$MeV, $\sigma_{\pi\Sigma}=25.9^{(3.8)}_{(6.1)}\,$MeV, $\sigma_{\pi\Xi}=11.2^{(4.5)}_{(6.4)}\,$MeV and $\sigma_{\pi\Omega}=6.9^{(5.3)}_{(4.3)}\,$MeV, as well as various parameters, renormalization factors and improvement coefficients that are relevant for simulations with our lattice action.

hep-lat↗

arXiv2021

Properties of the $\eta$ and $\eta^{\prime}$ mesons: Masses, decay constants and gluonic matrix elements

We present results for the $\eta$ and $\eta^\prime$ masses and their four independent decay constants at the physical point as well as their anomalous gluonic matrix elements $a_{\eta^{(\prime)}}$. The chiral and continuum limit extrapolation is performed on twenty-one $N_f = 2+1$ Coordinated Lattice Simulations (CLS) ensembles with non-perturbatively improved Wilson fermions at four different lattice spacings and along two trajectories in the quark mass plane, including one ensemble very close to physical quark masses. For the first time the decay constants are determined directly from the axialvector matrix elements without model assumptions. This allows us to study their QCD scale dependence and to determine all low-energy constants contributing at next-to-leading order in large-$N_c$ ChPT at a well defined QCD renormalization scale. We also discuss higher excited states in the $1400\,\mathrm{MeV}$ region.

hep-lat↗

arXiv2021

Masses and decay constants of the $\eta$ and $\eta^\prime$ mesons from lattice QCD

We determine the masses, the singlet and octet decay constants as well as the anomalous matrix elements of the $\eta$ and $\eta^\prime$ mesons in $N_f=2+1$ QCD\@. The results are obtained using twenty-one CLS ensembles of non-perturbatively improved Wilson fermions that span four lattice spacings ranging from $a\approx 0.086\,$fm down to $a\approx 0.050\,$fm. The pion masses vary from $M_{\pi}=420\,$MeV to $126\,$MeV and the spatial lattice extents $L_s$ are such that $L_sM_\pi\gtrsim 4$, avoiding significant finite volume effects. The quark mass dependence of the data is tightly constrained by employing two trajectories in the quark mass plane, enabling a thorough investigation of U($3$) large-$N_c$ chiral perturbation theory (ChPT). The continuum limit extrapolated data turn out to be reasonably well described by the next-to-leading order ChPT parametrization and the respective low energy constants are determined. The data are shown to be consistent with the singlet axial Ward identity and, for the first time, also the matrix elements with the topological charge density are computed. We also derive the corresponding next-to-leading order large-$N_{c}$ ChPT formulae. We find $F^8 = 115.0(2.8)~\text{MeV}$, $\theta_{8} = -25.8(2.3)^{\circ}$, $\theta_0 = -8.1(1.8)^{\circ}$ and, in the $\overline{\mathrm{MS}}$ scheme for $N_f=3$, $F^{0}(\mu = 2\,\mathrm{GeV}) = 100.1(3.0)~\text{MeV}$, where the decay constants read $F^8_\eta=F^8\cos \theta_8$, $F^8_{\eta^\prime}=F^8\sin \theta_8$, $F^0_\eta=-F^0\sin \theta_0$ and $F^0_{\eta^\prime}=F^0\cos \theta_0$. For the gluonic matrix elements, we obtain $a_{\eta}(\mu = 2\,\mathrm{GeV}) = 0.0170(10)\,\mathrm{GeV}^{3}$ and $a_{\eta^{\prime}}(\mu = 2\,\mathrm{GeV}) = 0.0381(84)\,\mathrm{GeV}^{3}$, where statistical and all systematic errors are added in quadrature.

hep-lat↗

arXiv2020

Running coupling constant from position-space current-current correlation functions in three-flavor lattice QCD

In this Letter, we provide a determination of the coupling constant in three-flavor quantum chromodynamics (QCD), $\alpha^{\overline{\mathrm{MS}}}_s(\mu)$, for $\overline{\mathrm{MS}}$ renormalization scales $\mu \in (1,\,2)$ GeV. The computation uses gauge field configuration ensembles with $\mathcal{O}(a)$-improved Wilson-clover fermions generated by the Coordinated Lattice Simulations (CLS) consortium. Our approach is based on current-current correlation functions and has never been applied before in this context. We convert the results perturbatively to the QCD $\Lambda$-parameter and obtain $\Lambda_{\overline{\mathrm{MS}}}^{N_f=3} = 342 \pm 17$ MeV, which agrees with the world average published by the Particle Data Group and has competing precision. The latter was made possible by a unique combination of state-of-the-art CLS ensembles with very fine lattice spacings, further reduction of discretization effects from a dedicated numerical stochastic perturbation theory simulation, combining data from vector and axial-vector channels and matching to high-order perturbation theory.

hep-lat↗

arXiv2017

CLS 2+1 flavor simulations at physical light- and strange-quark masses

We report recent efforts by CLS to generate an ensemble with physical light- and strange-quark masses in a lattice volume of 192x96^3 at $\beta=3.55$ corresponding to a lattice spacing of 0.064 fm. This ensemble is being generated as part of the CLS 2+1 flavor effort with improved Wilson fermions. Our simulations currently cover 5 lattice spacings ranging from 0.039 fm to 0.086 fm at various pion masses along chiral trajectories with either the sum of the quark masses kept fixed, or with the strange-quark mass at the physical value. The current status of simulations is briefly reviewed, including a short discussion of measured autocorrelation times and of the main features of the simulations. We then proceed to discuss the thermalization strategy employed for the generation of the physical quark-mass ensemble and present first results for some simple observables. Challenges encountered in the simulation are highlighted.

hep-lat↗

arXiv2017

$\eta$ and $\eta^\prime$ masses and decay constants

We present preliminary results for the masses and decay constants of the $\eta$ and $\eta^\prime$ mesons using CLS $N_f = 2+1$ ensembles. One of the major challenges in these calculations are the large statistical fluctuations due to disconnected quark loops. We tackle these by employing a combination of noise reduction techniques which are tuned to minimize the statistical error at a fixed cost. On the analysis side we carefully assess excited states contributions by using a direct fit approach.

hep-lat↗

arXiv2017

Towards the continuum limit with improved Wilson fermions employing open boundary conditions

We present selected results obtained by RQCD from simulations of $N_f=2+1$ flavours of non-perturbatively $\mathcal{O}(a)$ improved Wilson fermions, employing open boundary conditions in time. The ensembles were created within the CLS (Coordinated Lattice Simulations) effort at five different values of the lattice spacing, ranging from 0.085fm down to below 0.04fm. Many quark mass combinations were realized, in particular along lines where the sum of the bare quark masses was kept fixed as well as trajectories of an approximately physical renormalized strange quark mass. Several key observables, including meson and baryon masses and the axial charge of the nucleon have been computed, and preliminary results are presented here. In some cases an accurate and controlled extrapolation to the continuum limit has become possible.

hep-lat↗

arXiv2016

Lattice simulations with $N_f=2+1$ improved Wilson fermions at a fixed strange quark mass

The explicit breaking of chiral symmetry of the Wilson fermion action results in additive quark mass renormalization. Moreover, flavour singlet and non-singlet scalar currents acquire different renormalization constants with respect to continuum regularization schemes. This complicates keeping the renormalized strange quark mass fixed when varying the light quark mass in simulations with $N_f=2+1$ sea quark flavours. Here we present and validate our strategy within the CLS (Coordinated Lattice Simulations) effort to achieve this in simulations with non-perturbatively order-$a$ improved Wilson fermions. We also determine various combinations of renormalization constants and improvement coefficients.

hep-lat↗

arXiv2015

Light-cone distribution amplitudes of the baryon octet

We present results of the first ab initio lattice QCD calculation of the normalization constants and first moments of the leading twist distribution amplitudes of the full baryon octet, corresponding to the small transverse distance limit of the associated S-wave light-cone wave functions. The P-wave (higher twist) normalization constants are evaluated as well. The calculation is done using $N_f=2+1$ flavors of dynamical (clover) fermions on lattices of different volumes and pion masses down to 222 MeV. Significant SU(3) flavor symmetry violation effects in the shape of the distribution amplitudes are observed.

hep-lat↗

arXiv2015

(Approximate) Low-Mode Averaging with a new Multigrid Eigensolver

We present a multigrid based eigensolver for computing low-modes of the Hermitian Wilson Dirac operator. For the non-Hermitian case multigrid methods have already replaced conventional Krylov subspace solvers in many lattice QCD computations. Since the $\gamma_5$-preserving aggregation based interpolation used in our multigrid method is valid for both, the Hermitian and the non-Hermitian case, inversions of very ill-conditioned shifted systems with the Hermitian operator become feasible. This enables the use of multigrid within shift-and-invert type eigensolvers. We show numerical results from our MPI-C implementation of a Rayleigh quotient iteration with multigrid. For state-of-the-art lattice sizes and moderate numbers of desired low-modes we achieve speed-ups of an order of magnitude and more over PARPACK. We show results and develop strategies how to make use of our eigensolver for calculating disconnected contributions to hadronic quantities that are noisy and still computationally challenging. Here, we explore the possible benefits, using our eigensolver for low-mode averaging and related methods with high and low accuracy eigenvectors. We develop a low-mode averaging type method using only a few of the smallest eigenvectors with low accuracy. This allows us to avoid expensive exact eigensolves, still benefitting from reduced statistical errors.

hep-lat↗

arXiv2015

Using NSPT for the Removal of Hypercubic Lattice Artifacts

The treatment of hypercubic lattice artifacts is essential for the calculation of non-perturbative renormalization constants of RI-MOM schemes. It has been shown that for the RI'-MOM scheme a large part of these artifacts can be calculated and subtracted with the help of diagrammatic Lattice Perturbation Theory (LPT). Such calculations are typically restricted to 1-loop order, but one may overcome this limitation and calculate hypercubic corrections for any operator and action beyond the 1-loop order using Numerical Stochastic Perturbation Theory (NSPT). In this study, we explore the practicability of such an approach and consider, as a first test, the case of Wilson fermion bilinear operators in a quenched theory. Our results allow us to compare boosted and unboosted perturbative corrections up to the 3-loop order.

hep-lat↗

arXiv2014

Simulation of QCD with N_f=2+1 flavors of non-perturbatively improved Wilson fermions

We describe a new set of gauge configurations generated within the CLS effort. These ensembles have N_f=2+1 flavors of non-perturbatively improved Wilson fermions in the sea with the Luescher-Weisz action used for the gluons. Open boundary conditions in time are used to address the problem of topological freezing at small lattice spacings and twisted-mass reweighting for improved stability of the simulations. We give the bare parameters at which the ensembles have been generated and how these parameters have been chosen. Details of the algorithmic setup and its performance are presented as well as measurements of the pion and kaon masses alongside the scale parameter t_0.

hep-lat↗

arXiv2013

Discretization Errors for the Gluon and Ghost Propagators in Landau Gauge using NSPT

The subtraction of hypercubic lattice corrections, calculated at 1-loop order in lattice perturbation theory (LPT), is common practice, e.g., for determinations of renormalization constants in lattice hadron physics. Providing such corrections beyond 1-loop order is however very demanding in LPT, and numerical stochastic perturbation theory (NSPT) might be the better candidate for this. Here we report on a first feasibility check of this method and provide (in a parametrization valid for arbitrary lattice couplings) the lattice corrections up to 3-loop order for the SU(3) gluon and ghost propagators in Landau gauge. These propagators are ideal candidates for such a check, as they are available from lattice simulations to high precision and can be combined to a renormalization group invariant product (Minimal MOM coupling) for which a 1-loop LPT correction was found to be insufficient to remove the bulk of the hypercubic lattice artifacts from the data. As a bonus, we also compare our results with the ever popular H(4) method.

hep-lat↗