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Jakub Malinowski

Publications and source records attributed to Jakub Malinowski.

3 recordsLinked to original sources

Direction-aware topological descriptors for elastic stiffness tensor prediction in porous materials

Classical topological descriptors used in topological data analysis (TDA) are invariant under permutations of spatial axes and therefore cannot represent the loading direction, which is essential for modeling anisotropic mechanical response. Here, this limitation is addressed by introducing a direction-aware TDA framework in which the loading axis is explicitly embedded into filtration functions used to compute both persistent homology and Euler characteristic profile descriptors. We apply this framework to predict the full elastic stiffness tensor of porous microstructures using non-directional as well as direction-aware descriptors of the structures as well as convolutional neural networks trained directly on the voxelized structure. We show that the performance of all those are comparable on the diagonal uniaxial, Poisson, and shear components. However for the twelve off-diagonal, normal shear coupling components - which govern elastic anisotropy and are the hardest to predict - only direction-aware topology retains meaningful predictive power, with all baselines, non-directional descriptors and the CNN collapsing to near-chance accuracy. When used as inputs to gradient-boosted tree models, the proposed descriptors match or exceed the accuracy of the convolutional neural network specifically on these hardest-to-predict coupling terms, despite relying on a compact, physically interpretable representation that is orders of magnitude smaller than the raw voxel grid. Overall, the results establish direction-aware TDA as a practical route for linking porous microstructure to the full anisotropic elastic response, capturing coupling terms that conventional descriptors and end-to-end deep learning models fail to resolve.

physics.comp-ph

A Survey of Dimension Estimation Methods

It is a standard assumption that datasets in high dimension have an internal structure which means that they in fact lie on, or near, subsets of a lower dimension. In many instances it is important to understand the real dimension of the data, hence the complexity of the dataset at hand. A great variety of dimension estimators have been developed to find the intrinsic dimension of the data but there is little guidance on how to reliably use these estimators. This survey reviews a wide range of dimension estimation methods, categorising them by the geometric information they exploit: tangential estimators which detect a local affine structure; parametric estimators which rely on dimension-dependent probability distributions; and estimators which use topological or metric invariants. The paper evaluates the performance of these methods, as well as investigating varying responses to curvature and noise. Key issues addressed include robustness to hyperparameter selection, sample size requirements, accuracy in high dimensions, precision, and performance on non-linear geometries. In identifying the best hyperparameters for benchmark datasets, overfitting is frequent, indicating that many estimators may not generalise well beyond the datasets on which they have been tested.

stat.ML

CINNAMON: A hybrid approach to change point detection and parameter estimation in single-particle tracking data

Change point detection has become an important part of the analysis of the single-particle tracking data, as it allows one to identify moments, in which the motion patterns of observed particles undergo significant changes. The segmentation of diffusive trajectories based on those moments may provide insight into various phenomena in soft condensed matter and biological physics. In this paper, we propose CINNAMON, a hybrid approach to classifying single-particle tracking trajectories, detecting change points within them, and estimating diffusion parameters in the segments between the change points. Our method is based on a combination of neural networks, feature-based machine learning, and statistical techniques. It has been benchmarked in the second Anomalous Diffusion Challenge. The method offers a high level of interpretability due to its analytical and feature-based components. A potential use of features from topological data analysis is also discussed.

q-bio.QM