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Jakub Pekárek

Publications and source records attributed to Jakub Pekárek.

14 recordsLinked to original sources

The Hierarchy of Hereditary Sorting Operators

We consider the following general model of a sorting procedure: we fix a hereditary permutation class $\mathcal{C}$, which corresponds to the operations that the procedure is allowed to perform in a single step. The input of sorting is a permutation $π$ of the set $[n]=\{1,2,\dotsc,n\}$, i.e., a sequence where each element of $[n]$ appears once. In every step, the sorting procedure picks a permutation $σ$ of length $n$ from $\mathcal{C}$, and rearranges the current permutation of numbers by composing it with $σ$. The goal is to transform the input $π$ into the sorted sequence $1,2,\dotsc,n$ in as few steps as possible. This model of sorting captures not only classical sorting algorithms, like insertion sort or bubble sort, but also sorting by series of devices, like stacks or parallel queues, as well as sorting by block operations commonly considered, e.g., in the context of genome rearrangement. Our goal is to describe the possible asymptotic behavior of the worst-case number of steps needed when sorting with a hereditary permutation class. As the main result, we show that any hereditary permutation class $\mathcal{C}$ falls into one of five distinct categories. Disregarding the classes that cannot sort all permutations, the number of steps needed to sort any permutation of $[n]$ with $\mathcal{C}$ is either $Θ(n^2)$, a function between $O(n)$ and $Ω(\sqrt{n})$, a function betwee $O(\log^2 n)$ and $Ω(\log n), or $1$, and for each of these cases we provide a structural characterization of the corresponding hereditary classes.

math.CO↗

Induced odd cycle packing number, independent sets, and chromatic number

The induced odd cycle packing number $iocp(G)$ of a graph $G$ is the maximum integer $k$ such that $G$ contains an induced subgraph consisting of $k$ pairwise vertex-disjoint odd cycles. Motivated by applications to geometric graphs, Bonamy et al.~\cite{indoc} proved that graphs of bounded induced odd cycle packing number, bounded VC dimension, and linear independence number admit a randomized EPTAS for the independence number. We show that the assumption of bounded VC dimension is not necessary, exhibiting a randomized algorithm that for any integers $k\ge 0$ and $t\ge 1$ and any $n$-vertex graph $G$ of induced odd cycle packing number at most $k$ returns in time $O_{k,t}(n^{k+4})$ an independent set of $G$ whose size is at least $α(G)-n/t$ with high probability. In addition, we present $χ$-boundedness results for graphs with bounded odd cycle packing number, and use them to design a QPTAS for the independence number only assuming bounded induced odd cycle packing number.

cs.DM↗

Long paths make pattern-counting hard, and deep trees make it harder

We study the counting problem known as #PPM, whose input is a pair of permutations $π$ and $τ$ (called pattern and text, respectively), and the task is to find the number of subsequences of $τ$ that have the same relative order as $π$. A simple brute-force approach solves #PPM for a pattern of length $k$ and a text of length $n$ in time $O(n^{k+1})$, while Berendsohn, Kozma and Marx have recently shown that under the exponential time hypothesis (ETH), it cannot be solved in time $f(k) n^{o(k/\log k)}$ for any function $f$. In this paper, we consider the restriction of #PPM, known as $\mathcal{C}$-Pattern #PPM, where the pattern $π$ must belong to a hereditary permutation class $\mathcal{C}$. Our goal is to identify the structural properties of $\mathcal{C}$ that determine the complexity of $\mathcal{C}$-Pattern #PPM. We focus on two such structural properties, known as the long path property (LPP) and the deep tree property (DTP). Assuming ETH, we obtain these results: 1. If $C$ has the LPP, then $\mathcal{C}$-Pattern #PPM cannot be solved in time $f(k)n^{o(\sqrt{k})}$ for any function $f$, and 2. if $C$ has the DTP, then $\mathcal{C}$-Pattern #PPM cannot be solved in time $f(k)n^{o(k/\log^2 k)}$ for any function $f$. Furthermore, when $\mathcal{C}$ is one of the so-called monotone grid classes, we show that if $\mathcal{C}$ has the LPP but not the DTP, then $\mathcal{C}$-Pattern #PPM can be solved in time $f(k)n^{O(\sqrt k)}$. In particular, the lower bounds above are tight up to the polylog terms in the exponents.

cs.CC↗

Griddings of permutations and hardness of pattern matching

We study the complexity of the decision problem known as Permutation Pattern Matching, or PPM. The input of PPM consists of a pair of permutations $τ$ (the `text') and $π$ (the `pattern'), and the goal is to decide whether $τ$ contains $π$ as a subpermutation. On general inputs, PPM is known to be NP-complete by a result of Bose, Buss and Lubiw. In this paper, we focus on restricted instances of PPM where the text is assumed to avoid a fixed (small) pattern $σ$; this restriction is known as Av($σ$)-PPM. It has been previously shown that Av($σ$)-PPM is polynomial for any $σ$ of size at most 3, while it is NP-hard for any $σ$ containing a monotone subsequence of length four. In this paper, we present a new hardness reduction which allows us to show, in a uniform way, that Av($σ$)-PPM is hard for every $σ$ of size at least 6, for every $σ$ of size 5 except the symmetry class of $41352$, as well as for every $σ$ symmetric to one of the three permutations $4321$, $4312$ and $4231$. Moreover, assuming the exponential time hypothesis, none of these hard cases of Av($σ$)-PPM can be solved in time $2^{o(n/\log n)}$. Previously, such conditional lower bound was not known even for the unconstrained PPM problem. On the tractability side, we combine the CSP approach of Guillemot and Marx with the structural results of Huczynska and Vatter to show that for any monotone-griddable permutation class C, PPM is polynomial when the text is restricted to a permutation from C.

math.CO↗

Weak Coloring Numbers of Intersection Graphs

Weak and strong coloring numbers are generalizations of the degeneracy of a graph, where for each natural number $k$, we seek a vertex ordering such every vertex can (weakly respectively strongly) reach in $k$ steps only few vertices with lower index in the ordering. Both notions capture the sparsity of a graph or a graph class, and have interesting applications in the structural and algorithmic graph theory. Recently, the first author together with McCarty and Norin observed a natural volume-based upper bound for the strong coloring numbers of intersection graphs of well-behaved objects in $\mathbb{R}^d$, such as homothets of a centrally symmetric compact convex object, or comparable axis-aligned boxes. In this paper, we prove upper and lower bounds for the $k$-th weak coloring numbers of these classes of intersection graphs. As a consequence, we describe a natural graph class whose strong coloring numbers are polynomial in $k$, but the weak coloring numbers are exponential. We also observe a surprising difference in terms of the dependence of the weak coloring numbers on the dimension between touching graphs of balls (single-exponential) and hypercubes (double-exponential).

math.CO↗

A note on connected greedy edge colouring

Following a given ordering of the edges of a graph $G$, the greedy edge colouring procedure assigns to each edge the smallest available colour. The minimum number of colours thus involved is the chromatic index $χ'(G)$, and the maximum is the so-called Grundy chromatic index. Here, we are interested in the restricted case where the ordering of the edges builds the graph in a connected fashion. Let $χ_c'(G)$ be the minimum number of colours involved following such an ordering. We show that it is NP-hard to determine whether $χ_c'(G)>χ'(G)$. We prove that $χ'(G)=χ_c'(G)$ if $G$ is bipartite, and that $χ_c'(G)\leq 4$ if $G$ is subcubic.

math.CO↗

Characterization of 4-critical triangle-free toroidal graphs

We give an exact characterization of 3-colorability of triangle-free graphs drawn in the torus, in the form of 186 "templates" (graphs with certain faces filled by arbitrary quadrangulations) such that a graph from this class is not 3-colorable if and only if it contains a subgraph matching one of the templates. As a consequence, we show every triangle-free graph drawn in the torus with edge-width at least six is 3-colorable, a key property used in an efficient 3-colorability algorithm for triangle-free toroidal graphs.

math.CO↗

A Complexity Dichotomy for Permutation Pattern Matching on Grid Classes

Permutation Pattern Matching (PPM) is the problem of deciding for a given pair of permutations P and T whether the pattern P is contained in the text T. Bose, Buss and Lubiw showed that PPM is NP-complete. In view of this result, it is natural to ask how the situation changes when we restrict the pattern P to a fixed permutation class C; this is known as the C-Pattern PPM problem. Grid classes are special kind of permutation classes, consisting of permutations admitting a grid-like decomposition into simpler building blocks. Of particular interest are the so-called monotone grid classes, in which each building block is a monotone sequence. Recently, it has been discovered that grid classes, especially the monotone ones, play a fundamental role in the understanding of the structure of general permutation classes. This motivates us to study the hardness of C-Pattern PPM for a (monotone) grid class C. We provide a complexity dichotomy for C-Pattern PPM when C is taken to be a monotone grid class. Specifically, we show that the problem is polynomial-time solvable if a certain graph associated with C, called the cell graph, is a forest, and it is NP-complete otherwise. We further generalize our results to grid classes whose blocks belong to classes of bounded grid-width. We show that the C-Pattern PPM for such a grid class C is polynomial-time solvable if the cell graph of C avoids a cycle or a certain special type of path, and it is NP-complete otherwise.

math.CO↗

Coloring near-quadrangulations of the cylinder and the torus

Let G be a simple connected plane graph and let C_1 and C_2 be cycles in G bounding distinct faces f_1 and f_2. For a positive integer l, let r(l) denote the number of integers n such that -l<=n<=l, n is divisible by 3, and n has the same parity as l; in particular, r(4)=1. Let r_{f_1,f_2}(G) be the product of r(|f|) over all faces f of G distinct from f_1 and f_2, and let q(G)=1+sum_{f:|f|\neq 4} |f|, where the sum is over all faces f of G. We give an algorithm with time complexity O(r_{f_1,f_2}(G)q(G)|G|) which, given a 3-coloring psi of C_1 and C_2, either finds an extension of psi to a 3-coloring of G, or correctly decides no such extension exists. The algorithm is based on a min-max theorem for a variant of integer 2- commodity flows, and consequently in the negative case produces an obstruction to the existence of the extension. As a corollary, we show that every triangle-free graph drawn in the torus with edge-width at least 21 is 3-colorable.

math.CO↗

On generalized choice and coloring numbers

A well-known result of Alon shows that the coloring number of a graph is bounded by a function of its choosability. We explore this relationship in a more general setting with relaxed assumptions on color classes, encoded by a graph parameter.

math.CO↗

Irreducible 4-critical triangle-free toroidal graphs

The theory of Dvorak, Kral, and Thomas (2015) shows that a 4-critical triangle-free graph embedded in the torus has only a bounded number of faces of length greater than 4 and that the size of these faces is also bounded. We study the natural reduction in such embedded graphs - identification of opposite vertices in 4-faces. We give a computer-assisted argument showing that there are exactly four 4-critical triangle-free irreducible toroidal graphs in which this reduction cannot be applied without creating a triangle. Using this result, we show that every 4-critical triangle-free graph embedded in the torus has at most four 5-faces, or a 6-face and two 5-faces, or a 7-face and a 5-face, in addition to at least seven 4-faces. This result serves as a basis for the exact description of $4$-critical triangle-free toroidal graphs, which we present in a followup paper.

math.CO↗

On the Simultaneous Minimum Spanning Trees Problem

Simultaneous Embedding with Fixed Edges (SEFE) is a problem where given $k$ planar graphs we ask whether they can be simultaneously embedded so that the embedding of each graph is planar and common edges are drawn the same. Problems of SEFE type have inspired questions of Simultaneous Geometrical Representations and further derivations. Based on this motivation we investigate the generalization of the simultaneous paradigm on the classical combinatorial problem of minimum spanning trees. Given $k$ graphs with weighted edges, such that they have a common intersection, are there minimum spanning trees of the respective graphs such that they agree on the intersection? We show that the unweighted case is polynomial-time solvable while the weighted case is only polynomial-time solvable for $k=2$ and it is NP-complete for $k\geq 3$.

cs.DM↗

Minimal Sum Labeling of Graphs

A graph $G$ is called a sum graph if there is a so-called sum labeling of $G$, i.e. an injective function $\ell: V(G) \rightarrow \mathbb{N}$ such that for every $u,v\in V(G)$ it holds that $uv\in E(G)$ if and only if there exists a vertex $w\in V(G)$ such that $\ell(u)+\ell(v) = \ell(w)$. We say that sum labeling $\ell$ is minimal if there is a vertex $u\in V(G)$ such that $\ell(u)=1$. In this paper, we show that if we relax the conditions (either allow non-injective labelings or consider graphs with loops) then there are sum graphs without a minimal labeling, which partially answers the question posed by Miller, Ryan and Smyth in 1998.

cs.DM↗

Efficient Charge Collection in Coplanar Grid Radiation Detectors

We have modeled laser-induced transient current waveforms in radiation coplanar grid detectors. Poisson's equation has been solved by finite element method and currents induced by photo-generated charge were obtained using Shockley-Ramo theorem. The spectral response on a radiation flux has been modeled by Monte-Carlo simulations. We show 10$\times$ improved spectral resolution of coplanar grid detector using differential signal sensing. We model the current waveform dependence on doping, depletion width, diffusion and detector shielding and their mutual dependence is discussed in terms of detector optimization. The numerical simulations are successfully compared to experimental data and further model simplifications are proposed. The space charge below electrodes and a non-homogeneous electric field on a coplanar grid anode are found to be the dominant contributions to laser-induced transient current waveforms.

physics.ins-det↗