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James Greene

Publications and source records attributed to James Greene.

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Learning Stochastic Dynamical Systems with Structured Noise

Stochastic differential equations (SDEs) are a ubiquitous modeling framework that finds applications in physics, biology, engineering, social science, and finance. Due to the availability of large-scale data sets, there is growing interest in learning mechanistic models from observations with stochastic noise. In this work, we present a nonparametric framework to learn both the drift and diffusion terms in systems of SDEs where the stochastic noise is singular. Specifically, inspired by second-order equations from classical physics, we consider systems which possess structured noise, i.e. noise with a singular covariance matrix. We provide an algorithm for constructing estimators given trajectory data and demonstrate the effectiveness of our methods via a number of examples from physics and biology. As the developed framework is most naturally applicable to systems possessing a high degree of dimensionality reduction (i.e. symmetry), we also apply it to the high dimensional Cucker-Smale flocking model studied in collective dynamics and show that it is able to accurately infer the low dimensional interaction kernel from particle data.

stat.ML

The Emergence of Lines of Hierarchy in Collective Motion of Biological Systems

The emergence of large scale structures in biological systems, and in particular the formation of lines of hierarchy, is observed in many scales, from collections of cells to groups of insects to herds of animals. Motivated by phenomena in chemotaxis and phototaxis, we present a new class of alignment models which exhibit alignment into lines. The spontaneous formation of such ``fingers" can be interpreted as the emergence of leaders and followers in a system of identically interacting agents. Various numerical examples are provided, which demonstrate emergent behaviors similar to the ``fingering'' phenomenon observed in some phototaxis and chemotaxis experiments; this phenomenon is generally known as a challenging pattern to capture for existing models. The novel pairwise interactions provides a fundamental mechanism by which agents may form social hierarchy across a wide range of biological systems.

nlin.AO