arXiv subjects

James M. Stone

Publications and source records attributed to James M. Stone.

At least 145 records · Page 8Linked to original sources

arXiv2007

An Unsplit Godunov Method for Ideal MHD via Constrained Transport in Three Dimensions

We present a single step, second-order accurate Godunov scheme for ideal MHD which is an extension of the method described by Gardiner & Stone (2005) to three dimensions. This algorithm combines the corner transport upwind (CTU) method of Colella for multidimensional integration, and the constrained transport (CT) algorithm for preserving the divergence-free constraint on the magnetic field. We describe the calculation of the PPM interface states for 3D ideal MHD which must include multidimensional ``MHD source terms'' and naturally respect the balance implicit in these terms by the ${\bf\nabla\cdot B}=0$ condition. We compare two different forms for the CTU integration algorithm which require either 6- or 12-solutions of the Riemann problem per cell per time-step, and present a detailed description of the 6-solve algorithm. Finally, we present solutions for test problems to demonstrate the accuracy and robustness of the algorithm.

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arXiv2007

Electron Heating in Hot Accretion Flows

Local (shearing box) simulations of the nonlinear evolution of the magnetorotational instability in a collisionless plasma show that angular momentum transport by pressure anisotropy ($p_\perp \ne p_\parallel$, where the directions are defined with respect to the local magnetic field) is comparable to that due to the Maxwell and Reynolds stresses. Pressure anisotropy, which is effectively a large-scale viscosity, arises because of adiabatic invariants related to $p_\perp$ and $p_\parallel$ in a fluctuating magnetic field. In a collisionless plasma, the magnitude of the pressure anisotropy, and thus the viscosity, is determined by kinetic instabilities at the cyclotron frequency. Our simulations show that $\sim 50$ % of the gravitational potential energy is directly converted into heat at large scales by the viscous stress (the remaining energy is lost to grid-scale numerical dissipation of kinetic and magnetic energy). We show that electrons receive a significant fraction ($\sim [T_e/T_i]^{1/2}$) of this dissipated energy. Employing this heating by an anisotropic viscous stress in one dimensional models of radiatively inefficient accretion flows, we find that the radiative efficiency of the flow is greater than 0.5% for $\dot{M} \gtrsim 10^{-4} \dot{M}_{Edd}$. Thus a low accretion rate, rather than just a low radiative efficiency, is necessary to explain the low luminosity of many accreting black holes. For Sgr A* in the Galactic Center, our predicted radiative efficiencies imply an accretion rate of $\approx 3 \times 10^{-8} M_\odot {\rm yr^{-1}}$ and an electron temperature of $\approx 3 \times 10^{10}$ K at $\approx 10$ Schwarzschild radii; the latter is consistent with the brightness temperature inferred from VLBI observations.

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arXiv2007

Faraday Rotation in Global Accretion Disk Simulations: Implications for Sgr A*

These Faraday rotation calculations of hot, thick accretion flows are motivated by the measured steady rotation measure (RM) of $\approx -6 \times 10^5$ rad m$^{-2}$ from Sgr A*. In our numerical simulations, the quasi-steady state structure of the accretion flow, and the RM it produces, depends on the initial magnetic field. In spite of this dependence, we can draw several robust conclusions about Faraday rotation produced by geometrically thick accretion disks: i) the time averaged RM does not depend that sensitively on the viewing angle, but the stability of the RM can. Equatorial viewing angles show significant variability in RM (including sign reversals), while polar viewing angles are relatively stable if there is a large scale magnetic field threading the disk at large radii. ii) Most of the RM is produced at small radii for polar viewing angles while all radii contribute significantly near the midplane of the disk. Our simulations confirm previous analytic arguments that the accretion rate onto Sgr A* must satisfy $\dot M_{\rm in} \ll \dot M_{\rm Bondi} \sim 10^{-5} \mpy$ in order to not over-produce the measured RM. We argue that the steady RM $\approx -6 \times 10^5$ rad m$^{-2}$ from Sgr A* has two plausible explanations: 1) it is produced at $\sim 100$ Schwarzschild radii, requires $\dot{M}_{\rm in} \approx 3 \times 10^{-8} M_\odot$ yr$^{-1}$, and we view the flow at an angle of $\sim 30^\circ$ relative to the rotation axis of the disk; in our simulations, the variation in RM across a finite-sized source is sufficient to depolarize the emission below $\approx$ 100 GHz, consistent with observations. 2) Alternatively, the RM may be produced in the relatively spherical inflowing plasma near the circularization radius at $\sim 10^3-10^4$ Schwarzschild radii.

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arXiv2007

The Magnetic Rayleigh-Taylor Instability in Three Dimensions

We study the magnetic Rayleigh-Taylor instability in three dimensions, with focus on the nonlinear structure and evolution that results from different initial field configurations. We study strong fields in the sense that the critical wavelength l_c at which perturbations along the field are stable is a large fraction of the size of the computational domain. We consider magnetic fields which are initially parallel to the interface, but have a variety of configurations, including uniform everywhere, uniform in the light fluid only, and fields which change direction at the interface. Strong magnetic fields do not suppress instability, in fact by inhibiting secondary shear instabilities, they reduce mixing between the heavy and light fluid, and cause the rate of growth of bubbles and fingers to increase in comparison to hydrodynamics. Fields parallel to, but whose direction changes at, the interface produce long, isolated fingers separated by the critical wavelength l_c, which may be relevant to the morphology of the optical filaments in the Crab nebula.

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arXiv2007

Magnetohydronamic Evolution of HII Regions in Molecular Clouds: Simulation Methodology, Tests, and Uniform Media

We present a method for simulating the evolution of HII regions driven by point sources of ionizing radiation in magnetohydrodynamic media, implemented in the three-dimensional Athena MHD code. We compare simulations using our algorithm to analytic solutions and show that the method passes rigorous tests of accuracy and convergence. The tests reveal several conditions that an ionizing radiation-hydrodynamic code must satisfy to reproduce analytic solutions. As a demonstration of our new method, we present the first three-dimensional, global simulation of an HII region expanding into a magnetized gas. The simulation shows that magnetic fields suppress sweeping up of gas perpendicular to magnetic field lines, leading to small density contrasts and extremely weak shocks at the leading edge of the HII region's expanding shell.

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arXiv2007

Nonlinear Evolution of the Magnetohydrodynamic Rayleigh-Taylor Instability

We study the nonlinear evolution of the magnetic Rayleigh-Taylor instability using three-dimensional MHD simulations. We consider the idealized case of two inviscid, perfectly conducting fluids of constant density separated by a contact discontinuity perpendicular to the effective gravity g, with a uniform magnetic field B parallel to the interface. Modes parallel to the field with wavelengths smaller than l_c = [B B/(d_h - d_l) g] are suppressed (where d_h and d_l are the densities of the heavy and light fluids respectively), whereas modes perpendicular to B are unaffected. We study strong fields with l_c varying between 0.01 and 0.36 of the horizontal extent of the computational domain. Even a weak field produces tension forces on small scales that are significant enough to reduce shear (as measured by the distribution of the amplitude of vorticity), which in turn reduces the mixing between fluids, and increases the rate at which bubbles and finger are displaced from the interface compared to the purely hydrodynamic case. For strong fields, the highly anisotropic nature of unstable modes produces ropes and filaments. However, at late time flow along field lines produces large scale bubbles. The kinetic and magnetic energies transverse to gravity remain in rough equipartition and increase as t^4 at early times. The growth deviates from this form once the magnetic energy in the vertical field becomes larger than the energy in the initial field. We comment on the implications of our results to Z-pinch experiments, and a variety of astrophysical systems.

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arXiv2007

Coulomb Bubbles: Over-stable Driving of Magnetoacoustic Waves Due to the Rapid and Anisotropic Diffusion of Energy

We perform a linear magnetohydrodynamic perturbation analysis for a stratified magnetized envelope where the diffusion of heat is mediated by charged particles that are confined to flow along magnetic field lines. We identify an instability, the ``coulomb bubble instability,'' which may be thought of as standard magnetosonic fast and slow waves, driven by the rapid diffusion of heat along the direction of the magnetic field. We calculate the growth rate and stability criteria for the coulomb bubble instability for various choices of equilibrium conditions. The coulomb bubble instability is most strongly driven for weakly magnetized atmospheres that are strongly convectively stable. We briefly discuss a possible application of astrophysical interest: diffusion of interstellar cosmic rays in the hot T ~ 10^6 K Galactic corona. We show that for commonly accepted values of the cosmic ray and gas pressure as well as its overall characteristic dimensions, the Galactic corona is in a marginal state of stability with respect to a cosmic ray coulomb bubble instability. The implication being that a cosmic ray coulomb bubble instability plays a role regulating both the pressure and transport properties of interstellar cosmic rays, while serving as a source of acoustic power above the galactic disk. (abridged)

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arXiv2007

Effect of the Coriolis Force on the Hydrodynamics of Colliding Wind Binaries

Using fully three-dimensional hydrodynamic simulations, we investigate the effect of the Coriolis force on the hydrodynamic and observable properties of colliding wind binary systems. To make the calculations tractable, we assume adiabatic, constant velocity winds. The neglect of radiative driving, gravitational deceleration, and cooling limit the application of our models to real systems. However, these assumptions allow us to isolate the effect of the Coriolis force, and by simplifying the calculations, allow us to use a higher resolution (up to 640^3) and to conduct a larger survey of parameter space. We study the dynamics of collidng winds with equal mass loss rates and velocities emanating from equal mass stars on circular orbits, with a range of values for the ratio of the wind to orbital velocity. We also study the dynamics of winds from stars on elliptical orbits and with unequal strength winds. Orbital motion of the stars sweeps the shocked wind gas into an Archimedean spiral, with asymmetric shock strengths and therefore unequal postshock temperatures and densities in the leading and trailing edges of the spiral. We observe the Kelvin-Helmholtz instability at the contact surface between the shocked winds in systems with orbital motion even when the winds are identical. The change in shock strengths caused by orbital motion increases the volume of X-ray emitting post-shock gas with T > 0.59 keV by 63% for a typical system as the ratio of wind velocity to orbital velocity decreases to V_w/V_o = 2.5. This causes increased free-free emission from systems with shorter orbital periods and an altered time-dependence of the wind attenuation. We comment on the importance of the effects of orbital motion on the observable properties of colliding wind binaries.

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arXiv2006

Saturation of the Magnetothermal Instability in Three Dimensions

In dilute astrophysical plasmas, thermal conduction is primarily along magnetic field lines, and therefore highly anisotropic. As a result, the usual convective stability criterion is modified from a condition on entropy to a condition on temperature. For small magnetic fields or small wavenumbers, instability occurs in any atmosphere where the temperature and pressure gradients point in the same direction. We refer to the resulting convective instability as the magnetothermal instability (MTI). We present fully three-dimensional simulations of the MTI and show that saturation results in an atmosphere with different vertical structure, dependent upon the boundary conditions. When the temperature at the boundary of the unstable layer is allowed to vary, the temperature gradient relaxes until the unstable region is almost isothermal. When the temperature at the boundary of the unstable region is fixed, the magnetic field is reoriented to an almost vertical geometry as a result of buoyant motions. This case exhibits more vigorous turbulence. In both cases the resulting saturated heat flux is almost one-half of the value expected if the conduction were purely isotropic. The action of the MTI results in dynamical processes that lead to significant transport perpendicular to the initial direction of the magnetic field. The resulting magnetoconvection in both cases amplifies the magnetic field until it is almost in equipartition with sustained subsonic turbulence. These results are relevant to understanding measurements of the temperature profiles of the intracluster medium of clusters of galaxies as well as the structure of radiatively inefficient accretion flows.

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arXiv2006

Three Dimensional Compressible Hydrodynamic Simulations of Vortices in Disks

We carry out three-dimensional, high resolution (up to $1024^2\times 256$) hydrodynamic simulations of the evolution of vortices in vertically unstratified Keplerian disks using the shearing sheet approximation. The transient amplification of incompressible, linear amplitude leading waves (which has been proposed as a possible route to nonlinear hydrodynamical turbulence in disks) is used as one test of our algorithms; our methods accurately capture the predicted amplification, converges at second-order, and is free from aliasing. Waves expected to reach nonlinear amplitude at peak amplification become unstable to Kelvin-Helmholtz modes when $\mid W_{\rm max}\mid\gtrsim Ω$ (where $W_{\rm max}$ is the local maximum of vorticity and $Ω$ the angular velocity). We study the evolution of a power-law distribution of vorticity consistent with Kolmogorov turbulence; in two-dimensions long-lived vortices emerge and decay slowly, similar to previous studies. In three-dimensions, however, vortices are unstable to bending modes, leading to rapid decay. Only vortices with a length to width ratio smaller than one survive; in three-dimensions the residual kinetic energy and shear stress is at least one order of magnitude smaller than in two-dimensions. No evidence for sustained hydrodynamical turbulence and transport is observed in three-dimensions. Instead, at late times the residual transport is determined by the amplitude of slowly decaying, large-scale vortices (with horizontal extent comparable to the scale height of the disk), with additional contributions from nearly incompressible inertial waves possible. Evaluating the role that large-scale vortices play in astrophysical accretion disks will require understanding the mechanisms that generate and destroy them.

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arXiv2006

Simulation of the Magnetothermal Instability

In many magnetized, dilute astrophysical plasmas, thermal conduction occurs almost exclusively parallel to magnetic field lines. In this case, the usual stability criterion for convective stability, the Schwarzschild criterion, which depends on entropy gradients, is modified. In the magnetized long mean free path regime, instability occurs for small wavenumbers when (dP/dz)(dln T/dz) > 0, which we refer to as the Balbus criterion. We refer to the convective-type instability that results as the magnetothermal instability (MTI). We use the equations of MHD with anisotropic electron heat conduction to numerically simulate the linear growth and nonlinear saturation of the MTI in plane-parallel atmospheres that are unstable according to the Balbus criterion. The linear growth rates measured from the simulations are in excellent agreement with the weak field dispersion relation. The addition of isotropic conduction, e.g. radiation, or strong magnetic fields can damp the growth of the MTI and affect the nonlinear regime. The instability saturates when the atmosphere becomes isothermal as the source of free energy is exhausted. By maintaining a fixed temperature difference between the top and bottom boundaries of the simulation domain, sustained convective turbulence can be driven. MTI-stable layers introduced by isotropic conduction are used to prevent the formation of unresolved, thermal boundary layers. We find that the largest component of the time-averaged heat flux is due to advective motions as opposed to the actual thermal conduction itself. Finally, we explore the implications of this instability for a variety of astrophysical systems, such as neutron stars, the hot intracluster medium of galaxy clusters, and the structure of radiatively inefficient accretion flows.

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arXiv2005

Vertical Structure of Gas Pressure-Dominated Accretion Disks with Local Dissipation of Turbulence and Radiative Transport

(shortened) We calculate the vertical structure of a local patch of an accretion disk in which heating by dissipation of MRI-driven MHD turbulence is balanced by radiative cooling. Heating, radiative transport, and cooling are computed self-consistently with the structure by solving the equations of radiation MHD in the shearing-box approximation. Using a fully 3-d and energy-conserving code, we compute the structure of this disk segment over a span of more than five cooling times. After a brief relaxation period, a statistically steady-state develops. Measuring height above the midplane in units of the scale-height H predicted by a Shakura-Sunyaev model, we find that the disk atmosphere stretches upward, with the photosphere rising to about 7H, in contrast to the approximately 3H predicted by conventional analytic models. This more extended structure, as well as fluctuations in the height of the photosphere, may lead to departures from Planckian form in the emergent spectra. Dissipation is distributed across the region within roughly 3H of the midplane, but is very weak at greater altitudes. Because fluctuations in the dissipation are particularly strong away from the midplane, the emergent radiation flux can track dissipation fluctuations with a lag that is only 0.1--0.2 times the mean cooling time of the disk. Long timescale asymmetries in the dissipation distribution can also cause significant asymmetry in the flux emerging from the top and bottom surfaces of the disk. Radiative diffusion dominates Poynting flux in the vertical energy flow throughout the disk.

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arXiv2005

Shearing Box Simulations of the MRI in a Collisionless Plasma

We describe local shearing box simulations of turbulence driven by the magnetorotational instability (MRI) in a collisionless plasma. Collisionless effects may be important in radiatively inefficient accretion flows, such as near the black hole in the Galactic Center. The MHD version of ZEUS is modified to evolve an anisotropic pressure tensor. A fluid closure approximation is used to calculate heat conduction along magnetic field lines. The anisotropic pressure tensor provides a qualitatively new mechanism for transporting angular momentum in accretion flows (in addition to the Maxwell and Reynolds stresses). We estimate limits on the pressure anisotropy due to pitch angle scattering by kinetic instabilities. Such instabilities provide an effective ``collision'' rate in a collisionless plasma and lead to more MHD-like dynamics. We find that the MRI leads to efficient growth of the magnetic field in a collisionless plasma, with saturation amplitudes comparable to those in MHD. In the saturated state, the anisotropic stress is comparable to the Maxwell stress, implying that the rate of angular momentum transport may be moderately enhanced in a collisionless plasma.

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arXiv2005

Nonlinear Evolution of the Magnetothermal Instability in Two Dimensions

In weakly magnetized, dilute plasmas in which thermal conduction along magnetic field lines is important, the usual convective stability criterion is modified. Instead of depending on entropy gradients, instability occurs for small wavenumbers when (dP/dz)(dln T/dz) > 0, which we refer to as the Balbus criterion. We refer to the convective instability that results in this regime as the magnetothermal instability (MTI). We use numerical MHD simulations which include anisotropic electron heat conduction to follow the growth and saturation of the MTI in two-dimensional, plane parallel atmospheres that are unstable according to the Balbus criterion. The linear growth rates measured in the simulations agree with the weak field dispersion relation. We investigate the effect of strong fields and isotropic conduction on the linear properties and nonlinear regime of the MTI. In the nonlinear regime, the instability saturates and convection decays away, when the atmosphere becomes isothermal. Sustained convective turbulence can be driven if there is a fixed temperature difference between the top and bottom edges of the simulation domain, and if isotropic conduction is used to create convectively stable layers that prevent the formation of unresolved, thermal boundary layers. The largest component of the time-averaged heat flux is due to advective motions. These results have implications for a variety of astrophysical systems, such as the temperature profile of hot gas in galaxy clusters, and the structure of radiatively inefficient accretion flows.

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arXiv2005

Energetics in MRI driven Turbulence

In these proceedings we present recent efforts to understand the energetics of magnetohydrodynamic (MHD) turbulence driven by the magneto-rotational instability (MRI). These studies are carried out in the local (shearing box) approximation using the Athena simulation code. Athena is a higher order Godunov algorithm based on the piecewise parabolic method (PPM), the corner transport upwind (CTU) integration algorithm, and the constrained transport (CT) algorithm for evolving the magnetic field. This algorithm is particularly suited for these studies owing to the conservation properties of a Godunov scheme and the particular implementation of the shearing box source terms used here. We present a variety of calculations which may be compared directly to previously published results and discuss them in some detail. The only significant discrepancy found between the results presented here and in the published literature involves the turbulent heating rate. We observe the presence of recurrent channel solutions in calculations involving a mean vertical magnetic field and the associated time lag between the energy injection and thermalization rate. We also present the results of a shearing box calculation which includes an optically thin radiative term with a cooling rate selected to match the turbulent heating rate. Some properties which we find uniformly present in all of the calculations presented here are compressible fluctuations, spiral waves and weak shocks. It is found that these compressible modes dominate the temporal fluctuations in the probability distribution functions for most of the thermodynamic variables; only the specific entropy is relatively immune to their effects.

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arXiv2005

An Unsplit Godunov Method for Ideal MHD via Constrained Transport

We describe a single step, second-order accurate Godunov scheme for ideal MHD based on combining the piecewise parabolic method (PPM) for performing spatial reconstruction, the corner transport upwind (CTU) method of Colella for multidimensional integration, and the constrained transport (CT) algorithm for preserving the divergence-free constraint on the magnetic field. We adopt the most compact form of CT, which requires the field be represented by area-averages at cell faces. We demonstrate that the fluxes of the area-averaged field used by CT can be made consistent with the fluxes of the volume-averaged field returned by a Riemann solver if they obey certain simple relationships. We use these relationships to derive new algorithms for constructing the CT fluxes at grid cell corners which reduce exactly to the equivalent one-dimensional solver for plane-parallel, grid-aligned flow. We show that the PPM reconstruction algorithm must include multidimensional terms for MHD, and we describe a number of important extensions that must be made to CTU in order for it to be used for MHD with CT. We present the results of a variety of test problems to demonstrate the method is accurate and robust.

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arXiv2005

A New Godunov Scheme for MHD, with Application to the MRI in disks

We describe a new numerical scheme for MHD which combines a higher order Godunov method (PPM) with Constrained Transport. The results from a selection of multidimensional test problems are presented. The complete test suite used to validate the method, as well as implementations of the algorithm in both F90 and C, are available from the web. A fully three-dimensional version of the algorithm has been developed, and is being applied to a variety of astrophysical problems including the decay of supersonic MHD turbulence, the nonlinear evolution of the MHD Rayleigh-Taylor instability, and the saturation of the magnetorotational instability in the shearing box. Our new simulations of the MRI represent the first time that a higher-order Godunov scheme has been applied to this problem, providing a quantitative check on the accuracy of previous results computed with ZEUS; the latter are found to be reliable.

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arXiv2005

Diffusion coefficient of a passive contaminant in a local MHD model of a turbulent accretion disc

We calculate the radial diffusion coefficient for a passive contaminant in an accretion disc which is turbulent due to the action of the magnetorotational instability. Numerical MHD simulations are used to follow the evolution of a local patch of the disc using the shearing box formalism. A separate continuity equation for the mass fraction of contaminant is integrated along with the MHD system, and radial profiles of this fraction are obtained as a function of time. Solutions of a linear diffusion equation are fitted to the numerical measured profiles of the contaminant, treating the diffusion coefficient D as the fitting parameter. At early times, the value of D is found to vary, however once the contaminant is spread over scales comparable to the box size, it saturates at a steady value. The ratio of D to the transport coefficient of angular momentum due to shear stress is small. If D can be used as a proxy for the turbulent magnetic diffusivity, the effective magnetic Prandtl number P_eff=ν/D (where νis the coefficient of "efective viscosity" associated with shear stress) would be large.

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