arXiv subjects

James Moody

Publications and source records attributed to James Moody.

4 recordsLinked to original sources

arXiv2026

Rare-event sampling for stochastic dynamics in network systems using cluster updates

Understanding the stochastic evolution in complex networks is a central challenge across physics, biology, engineering, social science, and finance. The most consequential macroscopic events, like cascading failures in communication networks, widespread epidemic outbreaks, and rapid shifts in societal opinions, often emerge from a confluence of rare, localized stochastic processes and need to pass certain bottlenecks. Standard forward-time simulation algorithms like the Gillespie method are inefficient for the investigation of such phenomena due to catastrophic rejection rates. Advanced rare-event techniques like splitting methods and transition-path sampling often suffer from kinetic trapping, path degeneracy, genealogical correlations, or critical slowing down when applied to complex heterogeneous networks. We propose to overcome this challenge by establishing a novel technique called conditional-path Monte Carlo (CPMC), inspired by loop algorithms from equilibrium condensed-matter physics. By employing non-local updates on spacetime clusters without rejections, CPMC generates a Markov chain of trajectories that all strictly respect the targeted macroscopic boundary conditions like the occurrence of a massive network failure. We demonstrate the framework's potential by performing a simple risk factor analysis for rare large-scale epidemic outbreaks in SIS dynamics on kinship networks.

cond-mat.stat-mech↗

arXiv2019

Exploring concurrency and reachability in the presence of high temporal resolution

Network properties govern the rate and extent of spreading processes on networks, from simple contagions to complex cascades. Recent advances have extended the study of spreading processes from static networks to temporal networks, where nodes and links appear and disappear. We review previous studies on the effects of temporal connectivity for understanding the spreading rate and outbreak size of model infection processes. We focus on the effects of "accessibility", whether there is a temporally consistent path from one node to another, and "reachability", the density of the corresponding "accessibility graph" representation of the temporal network. We study reachability in terms of the overall level of temporal concurrency between edges, quantifying the overlap of edges in time. We explore the role of temporal resolution of contacts by calculating reachability with the full temporal information as well as with a simplified interval representation approximation that demands less computation. We demonstrate the extent to which the computed reachability changes due to this simplified interval representation.

physics.soc-ph↗

arXiv2019

Concurrency and reachability in tree-like temporal networks

Network properties govern the rate and extent of various spreading processes, from simple contagions to complex cascades. Recently, the analysis of spreading processes has been extended from static networks to temporal networks, where nodes and links appear and disappear. We focus on the effects of "accessibility", whether there is a temporally consistent path from one node to another, and "reachability", the density of the corresponding "accessibility graph" representation of the temporal network. The level of reachability thus inherently limits the possible extent of any spreading process on the temporal network. We study reachability in terms of the overall levels of temporal concurrency between edges and the structural cohesion of the network agglomerating over all edges. We use simulation results and develop heterogeneous mean field model predictions for random networks to better quantify how the properties of the underlying temporal network regulate reachability.

physics.soc-ph↗

arXiv2013

The Rise of Network Ecology: Maps of the topic diversity and scientific collaboration

Network ecologists investigate the structure, function, and evolution of ecological systems using network models and analyses. For example, network techniques have been used to study community interactions (i.e., food-webs, mutualisms), gene flow across landscapes, and the sociality of individuals in populations. The work presented here uses a bibliographic and network approach to (1) document the rise of Network Ecology, (2) identify the diversity of topics addressed in the field, and (3) map the structure of scientific collaboration among contributing scientists. Our aim is to provide a broad overview of this emergent field that highlights its diversity and to provide a foundation for future advances. To do this, we searched the ISI Web of Science database for ecology publications between 1900 and 2012 using the search terms for research areas of Environmental Sciences & Ecology and Evolutionary Biology and the topic tag ecology. From these records we identified the Network Ecology publications using the topic terms network, graph theory, and web while controlling for the usage of misleading phrases. The resulting corpus entailed 29,513 publications between 1936 and 2012. We document the rapid rise in Network Ecology publications per year reaching a magnitude of over 5% of the ecological publications in 2012. Drawing topical information from the publication record content (titles, abstracts, keywords) and collaboration information from author listing, our analysis highlights the diversity and clustering of topics addressed within Network Ecology and reveals the highly collaborative approach of scientists publishing in this field. We conclude that Network Ecology is a large and rapidly growing area of ecology, and we expect continued growth of this research field.

q-bio.QM↗