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James S. Martin

Publications and source records attributed to James S. Martin.

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Simultaneous global and local clustering in multiplex networks with covariate information

Understanding both global and layer-specific group structures is useful for uncovering complex patterns in networks with multiple interaction types. In this work, we introduce a new model, the hierarchical multiplex stochastic blockmodel (HMPSBM), that simultaneously detects communities within individual layers of a multiplex network while inferring a global node clustering across the layers. A stochastic blockmodel is assumed in each layer, with probabilities of layer-level group memberships determined by a node's global group assignment. Our model uses a Bayesian framework, employing a probit stick-breaking process to construct node-specific mixing proportions over a set of shared Griffiths-Engen-McCloseky (GEM) distributions. These proportions determine layer-level community assignment, allowing for an unknown and varying number of groups across layers, while incorporating nodal covariate information to inform the global clustering. We propose a scalable variational inference procedure with parallelisable updates for application to large networks. Extensive simulation studies demonstrate our model's ability to accurately recover both global and layer-level clusters in complicated settings, and applications to real data showcase the model's effectiveness in uncovering interesting latent network structure.

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The Whittle likelihood for mixed models with application to groundwater level time series

Understanding the processes that influence groundwater levels is crucial for forecasting and responding to hazards such as groundwater droughts. Mixed models, which combine a fixed mean, expressed using independent predictors, with autocorrelated random errors, are used for inference, forecasting and filling in missing values in groundwater level time series. Estimating parameters of mixed models using maximum likelihood has high computational complexity. For large datasets, this leads to restrictive simplifying assumptions such as fixing certain free parameters in practical implementations. In this paper, we propose a method to jointly estimate all parameters of mixed models using the Whittle likelihood, a frequency-domain quasi-likelihood. Our method is robust to missing and non-Gaussian data and can handle much larger data sizes. We demonstrate the utility of our method both in a simulation study and with real-world data, comparing against maximum likelihood and an alternative two-stage approach that estimates fixed and random effect parameters separately.

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Online Bayesian changepoint detection for network Poisson processes with community structure

Network point processes often exhibit latent structure that govern the behaviour of the sub-processes. It is not always reasonable to assume that this latent structure is static, and detecting when and how this driving structure changes is often of interest. In this paper, we introduce a novel online methodology for detecting changes within the latent structure of a network point process. We focus on block-homogeneous Poisson processes, where latent node memberships determine the rates of the edge processes. We propose a scalable variational procedure which can be applied on large networks in an online fashion via a Bayesian forgetting factor applied to sequential variational approximations to the posterior distribution. The proposed framework is tested on simulated and real-world data, and it rapidly and accurately detects changes to the latent edge process rates, and to the latent node group memberships, both in an online manner. In particular, in an application on the Santander Cycles bike-sharing network in central London, we detect changes within the network related to holiday periods and lockdown restrictions between 2019 and 2020.

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Isotropy testing in spatial point patterns: nonparametric versus parametric replication under misspecification

Several hypothesis testing methods have been proposed to validate the assumption of isotropy in spatial point patterns. A majority of these methods are characterised by an unknown distribution of the test statistic under the null hypothesis of isotropy. Parametric approaches to approximating the distribution involve simulation of patterns from a user-specified isotropic model. Alternatively, nonparametric replicates of the test statistic under isotropy can be used to waive the need for specifying a model. In this paper, we first present a general framework which allows for the integration of a selected nonparametric replication method into isotropy testing. We then conduct a large simulation study comprising application-like scenarios to assess the performance of tests with different parametric and nonparametric replication methods. In particular, we explore distortions in test size and power caused by model misspecification, and demonstrate the advantages of nonparametric replication in such scenarios.

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Multivariate Geometric Anisotropic Cox Processes

This paper introduces a new modelling framework for multivariate anisotropic Cox processes. Building on recent innovations in multivariate spatial statistics, we propose a new family of multivariate anisotropic random fields and construct a family of anisotropic point processes from it. We give conditions that make the models valid, and we provide additional understanding of valid point process dependence. We also propose a likelihood-based inference mechanism for this type of process. Finally we illustrate the utility of the proposed modelling framework by analysing spatial ecological observations of plants and trees in the Barro Colorado Island study.

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Approximate Bayesian Computation for Smoothing

We consider a method for approximate inference in hidden Markov models (HMMs). The method circumvents the need to evaluate conditional densities of observations given the hidden states. It may be considered an instance of Approximate Bayesian Computation (ABC) and it involves the introduction of auxiliary variables valued in the same space as the observations. The quality of the approximation may be controlled to arbitrary precision through a parameter ε>0 . We provide theoretical results which quantify, in terms of ε, the ABC error in approximation of expectations of additive functionals with respect to the smoothing distributions. Under regularity assumptions, this error is O(nε), where n is the number of time steps over which smoothing is performed. For numerical implementation we adopt the forward-only sequential Monte Carlo (SMC) scheme of [16] and quantify the combined error from the ABC and SMC approximations. This forms some of the first quantitative results for ABC methods which jointly treat the ABC and simulation errors, with a finite number of data and simulated samples. When the HMM has unknown static parameters, we consider particle Markov chain Monte Carlo [2] (PMCMC) methods for batch statistical inference.

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Inference for a Class of Partially Observed Point Process Models

This paper presents a simulation-based framework for sequential inference from partially and discretely observed point process (PP's) models with static parameters. Taking on a Bayesian perspective for the static parameters, we build upon sequential Monte Carlo (SMC) methods, investigating the problems of performing sequential filtering and smoothing in complex examples, where current methods often fail. We consider various approaches for approximating posterior distributions using SMC. Our approaches, with some theoretical discussion are illustrated on a doubly stochastic point process applied in the context of finance.

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