arXiv subjects

James Stone

Publications and source records attributed to James Stone.

At least 19 recordsLinked to original sources

arXiv2025

Self-Similar Cosmic-Ray Transport in High-Resolution Magnetohydrodynamic Turbulence

We study the propagation of cosmic rays (CRs) through a simulation of magnetohydrodynamic (MHD) turbulence at unprecedented resolution of $10{,}240^3$. We drive turbulence that is subsonic and super-Alfv\'enic, characterized by $\delta B_{\rm rms}/B_0=2$. The high resolution enables an extended inertial range such that the Alfv\'en scale $l_A$, where $\delta B (l_A)\approx B_0$, is well resolved. This allows us to properly capture how the cascade transitions from large amplitudes on large scales to small amplitudes on small scales. We find that sharp bends in the magnetic field are key mediators of particle transport even on small scales via resonant curvature scattering. We further find that particle scattering in the turbulence shows strong hints of self-similarity: (1) the diffusion has weak energy dependence over almost two decades in particle energy and (2) the particles' random walk exhibits a broad power-law distribution of collision times such that the diffusion is dominated by the rarest, long-distance excursions. Our results suggest that large-amplitude MHD turbulence can provide efficient scattering over a wide range of CR energies and may help explain many CR observations above a $\sim$TeV: the flattening of the B/C spectrum, the hardening of CR primary spectra and the weak dependence of arrival anisotropy on CR energy.

astro-ph.HE↗

arXiv2025

The plunging region of a thin accretion disc around a Schwarzschild black hole

A set of analytic solutions for the plunging region thermodynamics have been developed recently under the assumption that the fluid undergoes a gravity-dominated geodesic plunge into the black hole. We test this model against a dedicated 3D global GRMHD simulation of a thin accretion disc around a Schwarzschild black hole using the code AthenaK. Provided that we account for non-adiabatic heating in the energetics, plausibly from grid-scale magnetic dissipation, we find an excellent agreement between the analytic model and the simulated quantities. These results are particularly important for existing and future electromagnetic black hole spin measurements, many of which do not to include the plunging fluid in their emission modelling. This exclusion typically stems from the assumption of a zero-stress boundary condition at the ISCO, forcing all thermodynamic quantities to vanish. Instead, we find a non-zero $\delta_\mathcal{J}\approx 5.3 \%$ drop in the angular momentum over the plunging region, which is consistent with both prior simulations and observations. We demonstrate that this stress is small enough for the dynamics of the fluid in the plunging region to be well-described by geodesic trajectories, yet large enough to cause measurable dissipation near to the ISCO - keeping thermodynamic quantities from vanishing. In the plunging region, constant $\alpha$-disc models are a physically inappropriate framework.

astro-ph.HE↗

arXiv2024

Performance-Portable Numerical Relativity with AthenaK

We present the numerical relativity module within AthenaK, an open source performance-portable astrophysics code designed for exascale computing applications. This module employs the Z4c formulation to solve the Einstein equations. We demonstrate its accuracy through a series of standard numerical relativity tests, including convergence of the gravitational waveform from binary black hole coalescence. Furthermore, we conduct scaling tests on OLCF Frontier and NERSC Perlmutter, where AthenaK exhibits excellent weak scaling efficiency of 80% on up to 65,536 AMD MI250X GPUs on Frontier (relative to 4 GPUs) and strong scaling efficiencies of 84% and 77% on AMD MI250X and NVIDIA A100 GPUs on Frontier and Perlmutter respectively. Additionally, we observe a significant performance boost, with two orders of magnitude speedup ($\gtrsim 200\times$) on a GPU compared to a single CPU core, affirming that AthenaK is well-suited for exascale computing, thereby expanding the potential for breakthroughs in numerical relativity research.

gr-qc↗

arXiv2024

Nonthermal Signatures of Radiative Supernova Remnants

The end of supernova remnant (SNR) evolution is characterized by a so-called "radiative" stage, in which efficient cooling of the hot bubble inside the forward shock slows expansion, leading to eventual shock breakup. Understanding SNR evolution at this stage is vital for predicting feedback in galaxies, since SNRs are expected to deposit their energy and momentum into the interstellar medium at the ends of their lives. A key prediction of SNR evolutionary models is the formation at the onset of the radiative stage of a cold, dense shell behind the forward shock. However, searches for these shells via their neutral hydrogen emission have had limited success. We instead introduce an independent observational signal of shell formation arising from the interaction between nonthermal particles accelerated by the SNR forward shock (cosmic rays) and the dense shell. Using a semi-analytic model of particle acceleration based on state-of-the-art simulations coupled with a high-resolution hydrodynamic model of SNR evolution, we predict the nonthermal emission that arises from this interaction. We demonstrate that the onset of the radiative stage leads to nonthermal signatures from radio to $\gamma$-rays, including radio and $\gamma$-ray brightening by nearly two orders of magnitude. Such a signature may be detectable with current instruments, and will be resolvable with the next generation of gamma-ray telescopes (namely, the Cherenkov Telescope Array).

astro-ph.HE↗

arXiv2020

Transition region from turbulent to dead zone in protoplanetary disks: local shearing box simulations

The dynamical evolution of protoplanetary disks is of key interest for building a comprehensive theory of planet formation and to explain the observational properties of these objects. Using the magnetohydrodynamics code Athena++, with an isothermal shearing box setup, we study the boundary between the active and dead zone, where the accretion rate changes and mass can accumulate. We quantify how the turbulence level is affected by the presence of a non uniform ohmic resistivity in the radial-x direction that leads to a region of inhibited turbulence (or dead zone). Comparing the turbulent activity to that of ideal simulations, the turbulence inhibited area shows density fluctuations and magnetic activity at its boundaries, driven by energy injection from the active (ideal) zone boundaries. We find magnetic dissipation to be significantly stronger in the ideal regions, and the turbulence penetration through the boundary of the dead zone is determined by the value of the resistivity itself, through the ohmic dissipation process, though the thickness of the transition does not play a significant role in changing the dissipation. We investigate the 1D spectra along the shearing direction: magnetic spectra appear flat at large scales both in ideal as well as resistive simulations, though a Kolmogorov scaling over more than one decade persists in the dead zone, suggesting the turbulent cascade is determined by the hydrodynamics of the system: MRI dynamo action is inhibited where sufficiently high resistivity is present.

astro-ph.SR↗

arXiv2020

Cosmological simulations of quasar fueling to sub-parsec scales using Lagrangian hyper-refinement

We present cosmological hydrodynamic simulations of a quasar-mass halo ($M_{\rm halo} \approx 10^{12.5}\,{\rm M}_{\odot}$ at z=2) that for the first time resolve gas transport down to the inner 0.1 pc surrounding the central massive black hole. We model a multi-phase interstellar medium including stellar feedback by supernovae, stellar winds, and radiation, and a hyper-Lagrangian refinement technique increasing the resolution dynamically approaching the black hole. We do not include black hole feedback. We show that the sub-pc inflow rate (1) can reach ~6 M$_{\odot}$yr$^{-1}$ roughly in steady state during the epoch of peak nuclear gas density (z~2), sufficient to power a luminous quasar, (2) is highly time variable in the pre-quasar phase, spanning 0.001-10 M$_{\odot}$yr$^{-1}$ on Myr timescales, and (3) is limited to short (~2 Myr) active phases (0.01-0.1 M$_{\odot}$yr$^{-1}$) followed by longer periods of inactivity at lower nuclear gas density and late times (z~1), owing to the formation of a hot central cavity. Inflowing gas is primarily cool, rotational support dominates over turbulence and thermal pressure, and star formation can consume as much gas as provided by inflows across 1 pc - 10 kpc. Gravitational torques from multi-scale stellar non-axisymmetries dominate angular momentum transport over gas self-torquing and pressure gradients, with accretion weakly dependent on black hole mass. Sub-pc inflow rates correlate with nuclear (but decouple from global) star formation and can exceed the Eddington rate by x10. The black hole can move ~10 pc from the galaxy center on ~0.1 Myr. Accreting gas forms pc-scale, rotationally supported, obscuring structures often misaligned with the galaxy-scale disk. These simulations open a new avenue to investigate black hole-galaxy co-evolution.

astro-ph.GA↗

arXiv2019

Global Radiation Magneto-hydrodynamic Simulations of Sub-Eddington Accretion Disks around Supermassive Black Holes

We use global three dimensional radiation magneto-hydrodynamic simulations to study the properties of inner regions of accretion disks around a 5\times 10^8 solar mass black hole with mass accretion rates reaching 7% and 20% of the Eddington value. This region of the disk is supported by magnetic pressure with surface density significantly smaller than the values predicted by the standard thin disk model but with a much larger disk scale height. The disks do not show any sign of thermal instability over many thermal time scales. More than half of the accretion is driven by radiation viscosity in the optically thin corona region for the lower accretion rate case, while accretion in the optically thick part of the disk is driven by the Maxwell and Reynolds stresses from MRI turbulence. Coronae with gas temperatures > 10^8 K are generated only in the inner \approx 10 gravitational radii in both simulations, being more compact in the higher accretion rate case. In contrast to the thin disk model, surface density increases with increasing mass accretion rate, which causes less dissipation in the optically thin region and a relatively weaker corona. The simulation results may explain the formation of X-ray coronae in Active Galactic Nuclei (AGNs), the compact size of such coronae, and the observed trend of optical to X-ray luminosity with Eddington ratio for many AGNs.

astro-ph.HE↗

arXiv2018

Three Dimensional Radiation Hydrodynamic Simulations of Massive Star Envelopes

(Abridged) Stars more massive than $20-30M_{\odot}$ are so luminous that the radiation force on the cooler, more opaque outer layers can balance or exceed the force of gravity. These near or super-Eddington outer envelopes represent a long standing challenge for calculating the evolution of massive stars in one dimension, a situation that limits our understanding of the stellar progenitors of some of the most exciting and energetic explosions in the universe. In particular, the proximity to the Eddington limit has been the suspected cause for the variability, large mass loss rate and giant eruptions of an enigmatic class of massive stars: the luminous blue variables (LBVs). When in quiescence, LBVs are usually found on the hot ($T_{eff} \approx 2 - 4 \times 10^4$ K) S Dor instability strip. While in outburst, most LBVs stay on the cold S Dor instability strip with a $T_{eff} \approx 9000$ K. Here we show that physically realistic three dimensional global radiation hydrodynamic simulations of radiation dominated massive stars with the largest supercomputers in the world naturally reproduce many observed properties of LBVs, specifically their location in the Hertzsprung-Russell (HR) diagram and their episodic mass loss with rates of $10^{-7}-10^{-5} M_{\odot}/yr$. The helium opacity peak is found to play an important role to determine these properties, which is not realized in the traditional one dimensional models of massive stars. The simulations also predict that convection causes irregular envelope oscillations and 10-30% brightness variations on a typical timescale of a few days. The variability is more prominent in our models that are on the cool part of the S Dor instability. These calculations pave the way to a quantitative understanding of the structure, stability and the dominant mode of mass loss of massive stars.

astro-ph.SR↗

arXiv2017

A fourth-order accurate finite volume method for ideal MHD via upwind constrained transport

We present a fourth-order accurate finite volume method for the solution of ideal magnetohydrodynamics (MHD). The numerical method combines high-order quadrature rules in the solution of semi-discrete formulations of hyperbolic conservation laws with the upwind constrained transport (UCT) framework to ensure that the divergence-free constraint of the magnetic field is satisfied. A novel implementation of UCT that uses the piecewise parabolic method (PPM) for the reconstruction of magnetic fields at cell corners in 2D is introduced. The resulting scheme can be expressed as the extension of the second-order accurate constrained transport (CT) Godunov-type scheme that is currently used in the Athena astrophysics code. After validating the base algorithm on a series of hydrodynamics test problems, we present the results of multidimensional MHD test problems which demonstrate formal fourth-order convergence for smooth problems, robustness for discontinuous problems, and improved accuracy relative to the second-order scheme.

astro-ph.IM↗

arXiv2017

Super-Eddington Accretion Disks around Supermassive black Holes

We use global three dimensional radiation magneto-hydrodynamical simulations to study accretion disks onto a $5\times 10^8M_{\odot}$ black hole with accretion rates varying from $\sim 250L_{Edd}/c^2$ to $1500 L_{Edd}/c^2$. We form the disks with torus centered at $50-80$ gravitational radii with self-consistent turbulence initially generated by the magneto-rotational instability. We study cases with and without net vertical magnetic flux. The inner regions of all disks have radiation pressure $\sim 10^4-10^6$ times the gas pressure. Non-axisymmetric density waves that steepen into spiral shocks form as gas flows towards the black hole. In simulations without net vertical magnetic flux, Reynolds stress generated by the spiral shocks are the dominant mechanism to transfer angular momentum. Maxwell stress from MRI turbulence can be larger than the Reynolds stress only when net vertical magnetic flux is sufficiently large. Outflows are formed with speed $\sim 0.1-0.4c$. When the accretion rate is smaller than $\sim 500 L_{Edd}/c^2$, outflows start around $10$ gravitational radii and the radiative efficiency is $\sim 5\%-7\%$ with both magnetic field configurations. With accretion rate reaching $1500 L_{Edd}/c^2$, most of the funnel region close to the rotation axis becomes optically thick and the outflow only develops beyond $50$ gravitational radii. The radiative efficiency is reduced to $1\%$. We always find the kinetic energy luminosity associated with the outflow is only $\sim 15\%-30\%$ of the radiative luminosity. The mass flux lost in the outflow is $\sim 15\%-50\%$ of the net mass accretion rates. We discuss implications of our simulation results on the observational properties of these disks.

astro-ph.HE↗

arXiv2016

Iron Opacity Bump Changes the Stability and Structure of Accretion Disks in Active Galactic Nuclei

Accretion disks around supermassive black holes have regions where the Rosseland mean opacity can be much larger than the electron scattering opacity primarily due to the large number of bound-bound transitions in iron. We study the effects of this iron opacity "bump" on the thermal stability and vertical structure of radiation pressure dominated accretion disks, utilizing three dimensional radiation magneto-hydrodynamic simulations in the local shearing box approximation. The simulations self-consistently calculate the heating due to MHD turbulence caused by magneto-rotational instability and radiative cooling by using the radiative transfer module based on a variable Eddington tensor in Athena. For a $5\times 10^8$ solar mass black hole with $\sim 3\%$ of the Eddington luminosity, a model including the iron opacity bump maintains its structure for more than $10$ thermal times without showing significant signs of thermal runaway. In contrast, if only electron scattering and free-free opacity are included as in the standard thin disk model, the disk collapses on the thermal time scale. The difference is caused by a combination of 1) an anti-correlation between the total optical depth and the temperature, and 2) enhanced vertical advective energy transport. These results suggest that the iron opacity bump may have a strong impact on the stability and structure of AGN accretion disks, and may contribute to a dependence of AGN properties on metallicity. Since this opacity is relevant primarily in UV emitting regions of the flow, it may help to explain discrepancies between observation and theory that are unique to AGNs.

astro-ph.HE↗

arXiv2015

Observational Signatures of Planets in Protoplanetary Disks II: Spiral Arms Observed in Scattered Light Imaging Can be Induced by Planets

Using 3D global hydro simulations coupled with radiative transfer calculations, we study the appearance of density waves induced by giant planets in direct imaging observations at near infrared wavelengths. We find that a 6 MJ planet in a typical disk around a 1 M_sun star can produce prominent and detectable spiral arms both interior and exterior to its orbit. The inner arms have (1) two well separated arms in roughly m=2 symmetry, (2) exhibit ~10-15 degrees pitch angles, (3) ~180-270 degrees extension in the azimuthal direction, and (4) ~150% surface brightness enhancement, all broadly consistent with observed spiral arms in the SAO 206462 and MWC 758 systems. The outer arms cannot explain observations as they are too tightly wound given typical disk scale height. We confirm previous results that the outer density waves excited by a 1 MJ planet exhibit low contrast in the IR and are practically not detectable. We also find that 3D effects of the waves are important. Compared to isothermal models, density waves in adiabatic disks exhibit weaker contrast in surface density but stronger contrast in scattered light images, due to a more pronounced vertical structure in the former caused by shock heating. To drive observed pairs of arms with an external companion on a circular orbit, a massive planet, possibly a brown dwarf, is needed at around [r~0.7", PA~10 degrees] (position angle PA from north to east) in SAO 206462 and [r~0.6", PA~10 degrees] in MWC 758. Their existence may be confirmed by direct imaging planet searches.

astro-ph.EP↗

arXiv2015

Large-Eddy Simulations of Magnetohydrodynamic Turbulence in Heliophysics and Astrophysics

We live in an age in which high-performance computing is transforming the way we do science. Previously intractable problems are now becoming accessible by means of increasingly realistic numerical simulations. One of the most enduring and most challenging of these problems is turbulence. Yet, despite these advances, the extreme parameter regimes encountered in space physics and astrophysics (as in atmospheric and oceanic physics) still preclude direct numerical simulation. Numerical models must take a Large Eddy Simulation (LES) approach, explicitly computing only a fraction of the active dynamical scales. The success of such an approach hinges on how well the model can represent the subgrid-scales (SGS) that are not explicitly resolved. In addition to the parameter regime, heliophysical and astrophysical applications must also face an equally daunting challenge: magnetism. The presence of magnetic fields in a turbulent, electrically conducting fluid flow can dramatically alter the coupling between large and small scales, with potentially profound implications for LES/SGS modeling. In this review article, we summarize the state of the art in LES modeling of turbulent magnetohydrodynamic (MHD) flows. After discussing the nature of MHD turbulence and the small-scale processes that give rise to energy dissipation, plasma heating, and magnetic reconnection, we consider how these processes may best be captured within an LES/SGS framework. We then consider several specific applications in heliophysics and astrophysics, assessing triumphs, challenges, and future directions.

astro-ph.SR↗

arXiv2014

The Ties that Bind? Galactic Magnetic Fields and Ram Pressure Stripping

One process affecting gas-rich cluster galaxies is ram pressure stripping, i.e. the removal of galactic gas through direct interaction with the intracluster medium. Galactic magnetic fields may have an important impact on the stripping rate and tail structure. We run the first magnetohydrodynamic simulations of ram pressure stripping that include a galactic magnetic field, using 159 pc resolution throughout our entire domain in order to resolve mixing throughout the tail. We find very little difference in the total amount of gas removed from the unmagnetized and magnetized galaxies, although a magnetic field with a radial component will initially accelerate stripped gas more quickly. In general, we find that magnetic fields in the disk lead to slower velocities in the stripped gas near the disk and faster velocities farther from the disk. We also find that magnetic fields in the galactic gas lead to larger unmixed structures in the tail. Finally, we discuss whether ram pressure stripped tails can magnetize the ICM. We find that the total magnetic energy density grows as the tail lengthens, likely through turbulence. There are microGauss-strength fields in the tail in all of our MHD runs, which survive to at least 100 kpc from the disk (the edge of our simulated region), indicating that the area-filling factor of magnetized tails in a cluster could be large.

astro-ph.GA↗

arXiv2013

The effects of irradiation on the cloud evolution in active galactic nuclei

We report on the first phase of our study of cloud irradiation. We study irradiation by means of numerical, two-dimensional time-dependent radiation-hydrodynamic simulations of a cloud irradiated by a strong radiation. We adopt a very simple treatment of the opacity, neglect photoionization and gravity, and instead focus on assessing the role of the type and magnitude of the opacity on the cloud evolution. Our main result is that even relatively dense clouds that are radiatively heated (i.e., with significant absorption opacity) do not move as a whole instead they undergo a very rapid and major evolution in its shape, size and physical properties. In particular, the cloud and its remnants become optical thin within less than one sound crossing time and before they can travel over a significant distance (a distance of a few radii of the initial cloud). We also found that a cloud can be accelerated as a whole under quite extreme conditions, e.g., the opacity must be dominated by scattering. However, the acceleration due to the radiation force is relatively small and unless the cloud is optically thin the cloud quickly changes its size and shape. We discuss implications for the modelling and interpetation broad line regions of active galactic nuclei.

astro-ph.GA↗

arXiv2013

On the Thermal Stability of Radiation Dominated Accretion Disks

We study the long-term thermal stability of radiation dominated disks in which the vertical structure is determined self-consistently by the balance of heating due to dissipation of MHD turbulence driven by the magneto-rotational instability (MRI), and cooling due to radiation emitted at the photosphere. The calculations adopt the local shearing box approximation, and utilize the recently developed radiation transfer module in the Athena MHD code based on a variable Eddington tensor rather than an assumed local closure. After saturation of the MRI, in many cases the disk maintains a steady vertical structure for many thermal times. However, in every case in which the box size in the horizontal directions is at least one pressure scale height, fluctuations associated with MRI turbulence and dynamo action in the disk eventually trigger a thermal runaway which causes the disk to either expand or contract until the calculation must be terminated. During runaway, the dependence of the heating and cooling rates on total pressure satisfy the simplest criterion for classical thermal instability. We identify several physical reasons why the thermal runaway observed in our simulations differ from the standard alpha disk model, for example the advection of radiation contributes a non-negligible fraction to the vertical energy flux at the largest radiation pressure, most of the dissipation does not happen in the disk mid-plane, and the change of dissipation scale height with mid-plane pressure is slower than the change of density scale height. We discuss how and why our results differ from those published previously. Such thermal runaway behavior might have important implications for interpreting temporal variability in observed systems, but fully global simulations are required to study the saturated state before detailed predictions can be made.

astro-ph.HE↗

arXiv2012

Non-linear Evolution of Rayleigh-Taylor Instability in a Radiation Supported Atmosphere

The non-linear regime of Rayleigh-Taylor instability (RTI) in a radiation supported atmosphere, consisting of two uniform fluids with different densities, is studied numerically. We perform simulations using our recently developed numerical algorithm for multi-dimensional radiation hydrodynamics based on a variable Eddington tensor as implemented in Athena, focusing on the regime where scattering opacity greatly exceeds absorption opacity. We find that the radiation field can reduce the growth and mixing rate of RTI, but this reduction is only significant when radiation pressure significantly exceeds gas pressure. Small scale structures are also suppressed in this case. In the non-linear regime, dense fingers sink faster than rarefied bubbles can rise, leading to asymmetric structures about the interface. By comparing the calculations that use a variable Eddington tensor (VET) versus the Eddington approximation, we demonstrate that anisotropy in the radiation field can affect the non-linear development of RTI significantly. We also examine the disruption of a shell of cold gas being accelerated by strong radiation pressure, motivated by models of radiation driven outflows in ultraluminous infrared galaxies. We find that when the growth rate of RTI is smaller than acceleration time scale, the amount of gas that would be pushed away by the radiation field is reduced due to RTI.

astro-ph.HE↗

arXiv2009

A Higher Order Godunov Method for Radiation Hydrodynamics: Radiation Subsystem

A higher order Godunov method for the radiation subsystem of radiation hydrodynamics is presented. A key ingredient of the method is the direct coupling of stiff source term effects to the hyperbolic structure of the system of conservation laws; it is composed of a predictor step that is based on Duhamel's principle and a corrector step that is based on Picard iteration. The method is second order accurate in both time and space, unsplit, asymptotically preserving, and uniformly well behaved from the photon free streaming (hyperbolic) limit through the weak equilibrium diffusion (parabolic) limit and to the strong equilibrium diffusion (hyperbolic) limit. Numerical tests demonstrate second order convergence across various parameter regimes.

math.NA↗