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James T Grist

Publications and source records attributed to James T Grist.

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Algebraic Methods and Computational Strategies for Pseudoinverse-Based MR Image Reconstruction (Pinv-Recon)

Image reconstruction in Magnetic Resonance Imaging (MRI) is fundamentally a linear inverse problem, such that the image can be recovered via explicit pseudoinversion of the encoding matrix by solving $\textbf{data} = \textbf{Encode} \times \textbf{image}$ - a method referred to here as Pinv-Recon. While the benefits of this approach were acknowledged in early studies, the field has historically favored fast Fourier transforms (FFT) and iterative techniques due to perceived computational limitations of the pseudoinversion approach. This work revisits Pinv-Recon in the context of modern hardware, software, and optimized linear algebra routines. We compare various matrix inversion strategies, assess regularization effects, and demonstrate incorporation of advanced encoding physics into a unified reconstruction framework. While hardware advances have already significantly reduced computation time compared to earlier studies, our work further demonstrates that leveraging Cholesky decomposition leads to a two-order-of-magnitude improvement in computational efficiency over previous Singular Value Decomposition-based implementations. Moreover, we demonstrate the versatility of Pinv-Recon on diverse $\textit{in vivo}$ datasets encompassing a range of encoding schemes, starting with low- to medium-resolution functional and metabolic imaging and extending to high-resolution cases. Our findings establish Pinv-Recon as a versatile and robust reconstruction framework that aligns with the increasing emphasis on open-source and reproducible MRI research.

physics.med-ph

The detection of acute kidney injury with hyperpolarized 13C Urea and multi-exponential fitting

Purpose: To assess the utility of Laplacian fitting to describe the differences in hyperpolarized 13C urea T2 relaxation in ischemic and healthy rodent kidneys. Theory and Methods: Six rats with unilateral renal ischemia were investigated. 13C urea T2 mapping was undertaken with a radial fast spin echo method, with subsequent post-processing performed with regularised Laplacian fitting. Results: Simulations showed that Laplacian fitting was stable down to a signal to noise ratio of 20. In vivo results showed a significant increase in the mono- and decrease in bi-exponential pools in IRI kidneys, in comparison to healthy (14+-10% vs 4+-2%, 85+-10% vs 95+-3%, p<0.05). Conclusion: We demonstrate, for the first time, the differences in multi-exponential behaviour of 13C,15N2-urea between the healthy and ischemic rodent kidney. The distribution of relaxation pools were found to be both visually and numerically significantly different. The ability to improve the information level in hyperpolarized MR, by utilizing the relaxation contrast mechanisms is an appealing option, that can easily be adopted in large animals and even in clinical studies in the near future.

physics.med-ph