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James Yu

Publications and source records attributed to James Yu.

3 recordsLinked to original sources

MS Lesion Segmentation: Revisiting Weighting Mechanisms for Federated Learning

Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's performance is limited for multiple sclerosis (MS) lesion segmentation tasks, due to variance in lesion characteristics imparted by different scanners and acquisition parameters. In this work, we propose the first FL MS lesion segmentation framework via two effective re-weighting mechanisms. Specifically, a learnable weight is assigned to each local node during the aggregation process, based on its segmentation performance. In addition, the segmentation loss function in each client is also re-weighted according to the lesion volume for the data during training. Comparison experiments on two FL MS segmentation scenarios using public and clinical datasets have demonstrated the effectiveness of the proposed method by outperforming other FL methods significantly. Furthermore, the segmentation performance of FL incorporating our proposed aggregation mechanism can exceed centralised training with all the raw data. The extensive evaluation also indicated the superiority of our method when estimating brain volume differences estimation after lesion inpainting.

eess.IV

Accessing United States Bulk Patent Data with patentpy and patentr

The United States Patent and Trademark Office (USPTO) provides publicly accessible bulk data files containing information for all patents from 1976 onward. However, the format of these files changes over time and is memory-inefficient, which can pose issues for individual researchers. Here, we introduce the patentpy and patentr packages for the Python and R programming languages. They allow users to programmatically fetch bulk data from the USPTO website and access it locally in a cleaned, rectangular format. Research depending on United States patent data would benefit from the use of patentpy and patentr. We describe package implementation, quality control mechanisms, and present use cases highlighting simple, yet effective, applications of this software.

cs.DL

On the depth of cutting planes

We introduce a natural notion of depth that applies to individual cutting planes as well as entire families. This depth has nice properties that make it easy to work with theoretically, and we argue that it is a good proxy for the practical strength of cutting planes. In particular, we show that its value lies in a well-defined interval, and we give parametric upper bounds on the depth of two prominent types of cutting planes: split cuts and intersection cuts from a simplex tableau. Interestingly, these parametric bounds can help explain behaviors that have been observed computationally. For polyhedra, the depth of an individual cutting plane can be computed in polynomial time through an LP formulation, and we show that it can be computed in closed form in the case of corner polyhedra.

math.OC