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Jan H. Orkisz

Publications and source records attributed to Jan H. Orkisz.

17 recordsLinked to original sources

Chemical diversity of dense cores in Orion B: The role of the environment

Prestellar cores are the sites of the earliest stages of star formation. Dust continuum observations are often used to identify and characterize their properties yet only a small fraction of them was observed and studied in terms of their composition and dynamical status. We explore the chemical diversity of prestellar cores and protostellar cores residing in the Orion B giant molecular cloud selected on their dust continuum emission to provide an unbiased view of their line emission properties and how they vary as function of the core parameters and environment. We make use of the large scale maps of Orion B in 25 molecular lines from which we extract information for a sample of 1001 cores selected using positions extracted from \textit{Herschel} dust continuum observations. The main properties of the core sample are derived using the Principal Component Analysis and additional maps of physical parameters: column density $N_{\rm{H_2}}$, far-ultraviolet (FUV) radiation field $G_0$ and mean volume gas density $n$. Additional high spectral resolution observations of $\rm C^{18}O(1-0)$ serve to evaluate the dynamical status of cores. The average line width of the cores is larger than what is typically expected for prestellar cores of closer star forming regions, which suggests that cores in Orion B are subjected to stronger turbulence affecting their stability. The first factor of the PCA analysis explaining the variation of the detected line intensities is the core column density of molecular gas. The second factor explains how the core chemical composition is strictly linked to their environment, which can be traced by the ratio of the external FUV radiation field over the core volume density, $G_0/n$. The third factor explaining the core chemical diversity is the mean density along the core line of sight, which is also associated with freeze-out and fractionation signatures.

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Estimating the dense gas mass of molecular clouds using spatially unresolved 3 mm line observations

We aim to develop a new method to infer the sub-beam probability density function (PDF) of H2 column densities and the dense gas mass within molecular clouds using spatially unresolved observations of molecular emission lines in the 3 mm band. We model spatially unresolved line integrated intensity measurements as the average of an emission function weighted by the sub-beam column density PDF. The emission function, which expresses the line integrated intensity as a function of the gas column density, is an empirical fit to high resolution (< 0.05 pc) multi-line observations of the Orion B molecular cloud. The column density PDF is assumed to be parametric, composed of a lognormal distribution at moderate column densities and a power law distribution at higher column densities. To estimate the sub-beam column density PDF, the emission model is combined with a Bayesian inversion algorithm (the Beetroots code), which takes account of thermal noise and calibration errors. We validate our method by demonstrating that it recovers the true column density PDF of the Orion B cloud, reproducing the observed emission line integrated intensities. We apply the method to 12CO(J=1-0), 13CO(J=1-0), C18O(J=1-0), HCN(J=1-0), HCO+(J=1-0) and N2H+(J=1-0) observations of a 700 x 700 pc2 field of view (FoV) in the nearby galaxy M51. On average, the model reproduces the observed intensities within 30%. The column density PDFs obtained for the spiral arm region within our test FoV are dominated by a power-law tail at high column densities, with slopes that are consistent with gravitational collapse. Outside the spiral arm, the column density PDFs are predominantly lognormal, consistent with supersonic isothermal turbulence. We calculate the mass associated with the powerlaw tail of the column density PDFs and observe a strong, linear correlation between this mass and the 24$μ$m surface brightness.

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Tracers of the ionization fraction in dense and translucent molecular gas: II. Using mm observations to constrain ionization fraction across Orion B

The ionization fraction ($f_\mathrm{e}=n_\mathrm{e}/n_\mathrm{H}$) is a crucial parameter of interstellar gas, yet estimating it requires deep knowledge of molecular gas chemistry and observations of specific lines, such as those from isotopologs like HCO$^+$ and N$_2$H$^+$, which are detectable only in dense cores. Previous challenges in constraining $f_\mathrm{e}$ over large areas stemmed from the limitations of observational tracers and chemical models. Recent models have identified molecular line ratios that can trace $f_\mathrm{e}$ in different environments within molecular clouds. In this study, we analyze various molecular lines in the 3-4 mm range to derive the ionization fraction across the Orion B giant molecular cloud. We focus on dense and translucent gas, exploring variations with gas density ($n$) and the far-ultraviolet (FUV) radiation field ($G_0$). Our findings show that the ionization fraction ranges from $10^{-5.5}$ to $10^{-4}$ in translucent gas and $10^{-8}$ to $10^{-6}$ in dense gas. Notably, $f_\mathrm{e}$ is sensitive to $G_0$ in dense, UV-illuminated regions, decreasing with increasing volume density ($f_\mathrm{e} \propto n^{-0.227}$ for dense and $f_\mathrm{e} \propto n^{-0.3}$ for translucent gas) and increasing with $G_0$. In translucent gas, differing line ratios yield consistent fe values, indicating the importance of electron excitation of HCN and HNC. For dense gas, we recommend using the CN(1-0)/N$_2$H$^+$(1-0) ratio for upper limits on fe and C$^{18}$O(1-0)/HCO$^+$(1-0) for lower limits. In translucent environments, CCH(1-0)/HNC(1-0) effectively traces $f_\mathrm{e}$. The higher fe values in translucent gas align with the C$^+$/CI/CO transition, while values in dense gas are adequate for coupling with the magnetic field.

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Beetroots: spatially-regularized Bayesian inference of physical parameter maps -- Application to Orion

The current generation of millimeter receivers is able to produce cubes of 800 000 pixels by 200 000 frequency channels to cover several square degrees over the 3 mm atmospheric window. Estimating the physical conditions of the interstellar medium (ISM) with an astrophysical model on such datasets is challenging. Common approaches tend to converge to local minima and typically poorly reconstruct regions with low signal-to-noise ratio (S/N). This instrumental revolution thus calls for new scalable data analysis techniques. We present Beetroots, a Python software that performs Bayesian reconstruction of maps of physical conditions from observation maps and an astrophysical model. It relies on an accurate statistical model, exploits spatial regularization to guide estimations, and uses state-of-the-art algorithms. It also assesses the ability of the astrophysical model to explain the observations, providing feedback to improve ISM models. We demonstrate the power of Beetroots with the Meudon PDR code on synthetic data, and then apply it to estimate physical condition maps in the full Orion molecular cloud 1 (OMC-1) star forming region based on Herschel molecular line emission maps. The application to the synthetic case shows that Beetroots can currently analyse maps with up to ten thousand pixels, addressing large variations of S/N, escaping from local minima, and providing consistent uncertainty quantifications. On a laptop, the inference runtime ranges from a few minutes for 100-pixel maps to 28 hours for 8100-pixel maps. The results on the OMC-1 maps are consistent with independent estimations from the literature, and improve our understanding of the region. This work paves the way towards systematic and rigorous analyses of observations produced by current and future instruments.

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On volume density and star formation in nearby molecular clouds

Volume density is a key physical quantity controlling the evolution of the interstellar medium (ISM) and star formation, but it cannot be accessed directly by observations of molecular clouds. We aim at estimating the volume density distribution in nearby molecular clouds, to measure the relation between column and volume densities and to determine their roles as predictors of star formation. We develop an inverse modelling method to estimate the volume density distributions of molecular clouds. We apply this method to 24 nearby molecular clouds for which column densities have been derived using Herschel observations and for which star formation efficiencies (SFE) have been derived using observations with the Spitzer space telescope. We then compare the relationships of several column- and volume-density based descriptors of dense gas with the SFE of the clouds. We derive volume density distributions for 24 nearby molecular clouds, which represents the most complete sample of such distributions to date. The relationship between column densities and peak volume densities in these clouds is a piece-wise power-law relation that changes its slope at a column density of $5-10\times 10^{22}$ H$_2$cm$^{-2}$. We interpret this as a signature of hierarchical fragmentation in the dense ISM. We find that the volume-density based dense gas fraction is the best predictor of star formation in the clouds, and in particular, it is as anticipated a better predictor than the column-density based dense gas fraction. We also derive a volume density threshold density for star formation of $2\times 10^4$ H$_2$cm$^{-3}$.

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Quantifying the informativity of emission lines to infer physical conditions in giant molecular clouds. I. Application to model predictions

Observations of ionic, atomic, or molecular lines are performed to improve our understanding of the interstellar medium (ISM). However, the potential of a line to constrain the physical conditions of the ISM is difficult to assess quantitatively, because of the complexity of the ISM physics. The situation is even more complex when trying to assess which combinations of lines are the most useful. Therefore, observation campaigns usually try to observe as many lines as possible for as much time as possible. We search for a quantitative statistical criterion to evaluate the constraining power of a (or combination of) tracer(s) with respect to physical conditions in order to improve our understanding of the statistical relationships between ISM tracers and physical conditions and helps observers to motivate their observation proposals. The best tracers are obtained by comparing the mutual information between a physical parameter and different sets of lines. We apply this method to simulations of radio molecular lines emitted by a photodissociation region similar to the Horsehead Nebula that would be observed at the IRAM 30m telescope. We search for the best lines to constrain the visual extinction $A_v^{tot}$ or the far UV illumination $G_0$. The most informative lines change with the physical regime (e.g., cloud extinction). Short integration time of the CO isotopologue $J=1-0$ lines already yields much information on the total column density most regimes. The best set of lines to constrain the visual extinction does not necessarily combine the most informative individual lines. Precise constraints on $G_0$ are more difficult to achieve with molecular lines. They require spectral lines emitted at the cloud surface (e.g., [CII] and [CI] lines). This approach allows one to better explore the knowledge provided by ISM codes, and to guide future observation campaigns.

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Neural network-based emulation of interstellar medium models

The interpretation of observations of atomic and molecular tracers in the galactic and extragalactic interstellar medium (ISM) requires comparisons with state-of-the-art astrophysical models to infer some physical conditions. Usually, ISM models are too time-consuming for such inference procedures, as they call for numerous model evaluations. As a result, they are often replaced by an interpolation of a grid of precomputed models. We propose a new general method to derive faster, lighter, and more accurate approximations of the model from a grid of precomputed models. These emulators are defined with artificial neural networks (ANNs) designed and trained to address the specificities inherent in ISM models. Indeed, such models often predict many observables (e.g., line intensities) from just a few input physical parameters and can yield outliers due to numerical instabilities or physical bistabilities. We propose applying five strategies to address these characteristics: 1) an outlier removal procedure; 2) a clustering method that yields homogeneous subsets of lines that are simpler to predict with different ANNs; 3) a dimension reduction technique that enables to adequately size the network architecture; 4) the physical inputs are augmented with a polynomial transform to ease the learning of nonlinearities; and 5) a dense architecture to ease the learning of simple relations. We compare the proposed ANNs with standard classes of interpolation methods to emulate the Meudon PDR code, a representative ISM numerical model. Combinations of the proposed strategies outperform all interpolation methods by a factor of 2 on the average error, reaching 4.5% on the Meudon PDR code. These networks are also 1000 times faster than accurate interpolation methods and require ten to forty times less memory. This work will enable efficient inferences on wide-field multiline observations of the ISM.

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Deep learning denoising by dimension reduction: Application to the ORION-B line cubes

Context. The availability of large bandwidth receivers for millimeter radio telescopes allows the acquisition of position-position-frequency data cubes over a wide field of view and a broad frequency coverage. These cubes contain much information on the physical, chemical, and kinematical properties of the emitting gas. However, their large size coupled with inhomogenous signal-to-noise ratio (SNR) are major challenges for consistent analysis and interpretation.Aims. We search for a denoising method of the low SNR regions of the studied data cubes that would allow to recover the low SNR emission without distorting the signals with high SNR.Methods. We perform an in-depth data analysis of the 13 CO and C 17 O (1 -- 0) data cubes obtained as part of the ORION-B large program performed at the IRAM 30m telescope. We analyse the statistical properties of the noise and the evolution of the correlation of the signal in a given frequency channel with that of the adjacent channels. This allows us to propose significant improvements of typical autoassociative neural networks, often used to denoise hyperspectral Earth remote sensing data. Applying this method to the 13 CO (1 -- 0) cube, we compare the denoised data with those derived with the multiple Gaussian fitting algorithm ROHSA, considered as the state of the art procedure for data line cubes.Results. The nature of astronomical spectral data cubes is distinct from that of the hyperspectral data usually studied in the Earth remote sensing literature because the observed intensities become statistically independent beyond a short channel separation. This lack of redundancy in data has led us to adapt the method, notably by taking into account the sparsity of the signal along the spectral axis. The application of the proposed algorithm leads to an increase of the SNR in voxels with weak signal, while preserving the spectral shape of the data in high SNR voxels.Conclusions. The proposed algorithm that combines a detailed analysis of the noise statistics with an innovative autoencoder architecture is a promising path to denoise radio-astronomy line data cubes. In the future, exploring whether a better use of the spatial correlations of the noise may further improve the denoising performances seems a promising avenue. In addition,

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Gas kinematics around filamentary structures in the Orion B cloud

Understanding the initial properties of star-forming material and how they affect the star formation process is key. From an observational point of view, the feedback from young high-mass stars on future star formation properties is still poorly constrained. In the framework of the IRAM 30m ORION-B large program, we obtained observations of the translucent and moderately dense gas, which we used to analyze the kinematics over a field of 5 deg^2 around the filamentary structures. We used the ROHSA algorithm to decompose and de-noise the C18O(1-0) and 13CO(1-0) signals by taking the spatial coherence of the emission into account. We produced gas column density and mean velocity maps to estimate the relative orientation of their spatial gradients. We identified three cloud velocity layers at different systemic velocities and extracted the filaments in each velocity layer. The filaments are preferentially located in regions of low centroid velocity gradients. By comparing the relative orientation between the column density and velocity gradients of each layer from the ORION-B observations and synthetic observations from 3D kinematic toy models, we distinguish two types of behavior in the dynamics around filaments: (i) radial flows perpendicular to the filament axis that can be either inflows (increasing the filament mass) or outflows and (ii) longitudinal flows along the filament axis. The former case is seen in the Orion B data, while the latter is not identified. We have also identified asymmetrical flow patterns, usually associated with filaments located at the edge of an HII region. This is the first observational study to highlight feedback from HII regions on filament formation and, thus, on star formation in the Orion B cloud. This simple statistical method can be used for any molecular cloud to obtain coherent information on the kinematics.

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Quantitative inference of the $H_2$ column densities from 3 mm molecular emission: A case study towards Orion B

Molecular hydrogen being unobservable in cold molecular clouds, the column density measurements of molecular gas currently rely either on dust emission observation in the far-IR or on star counting. (Sub-)millimeter observations of numerous trace molecules are effective from ground based telescopes, but the relationships between the emission of one molecular line and the H2 column density (NH2) is non-linear and sensitive to excitation conditions, optical depths, abundance variations due to the underlying physico-chemistry. We aim to use multi-molecule line emission to infer NH2 from radio observations. We propose a data-driven approach to determine NH2 from radio molecular line observations. We use supervised machine learning methods (Random Forests) on wide-field hyperspectral IRAM-30m observations of the Orion B molecular cloud to train a predictor of NH2, using a limited set of molecular lines as input, and the Herschel-based dust-derived NH2 as ground truth output. For conditions similar to the Orion B molecular cloud, we obtain predictions of NH2 within a typical factor of 1.2 from the Herschel-based estimates. An analysis of the contributions of the different lines to the predictions show that the most important lines are $^{13}$CO(1-0), $^{12}$CO(1-0), C$^{18}$O(1-0), and HCO$^+$(1-0). A detailed analysis distinguishing between diffuse, translucent, filamentary, and dense core conditions show that the importance of these four lines depends on the regime, and that it is recommended to add the N$_2$H$^+$(1-0) and CH$_3$OH(20-10) lines for the prediction of NH2 in dense core conditions. This article opens a promising avenue to directly infer important physical parameters from the molecular line emission in the millimeter domain. The next step will be to try to infer several parameters simultaneously (e.g., NH2 and far-UV illumination field) to further test the method. [Abridged]

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Tracers of the ionization fraction in dense and translucent gas: I. Automated exploitation of massive astrochemical model grids

The ionization fraction plays a key role in the physics and chemistry of the neutral interstellar medium, from controlling the coupling of the gas to the magnetic field to allowing fast ion-neutral reactions that drive interstellar chemistry. Most estimations of the ionization fraction have relied on deuterated species such as DCO+, whose detection is limited to dense cores representing an extremely small fraction of the volume of the giant molecular clouds they are part of. As large field-of-view hyperspectral maps become available, new tracers may be found. We search for the best observable tracers of the ionization fraction based on a grid of astrochemical models. We build grids of models that sample randomly a large space of physical conditions (unobservable quantities such as gas density, temperature, etc.) and compute the corresponding observables (line intensities, column densities) and the ionization fraction. We estimate the predictive power of each potential tracer by training a Random Forest model to predict the ionization fraction from that tracer, based on these model grids. In both translucent medium and cold dense medium conditions, several observable tracers with very good predictive power for the ionization fraction are found. Several tracers in cold dense medium conditions are found to be better and more widely applicable than the traditional DCO+/HCO+ ratio. We also provide simpler analytical fits for estimating the ionization fraction from the best tracers, and for estimating the associated uncertainties. We discuss the limitations of the present study and select a few recommended tracers in both types of conditions. The method presented here is very general and can be applied to the measurement of any other quantity of interest (cosmic ray flux, elemental abundances, etc.) from any type of model (PDR models, time-dependent chemical models, etc.). (abridged)

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C18O, 13CO, and 12CO abundances and excitation temperatures in the Orion B molecular cloud: An analysis of the precision achievable when modeling spectral line within the Local Thermodynamic Equilibrium approximation

CO isotopologue transitions are routinely observed in molecular clouds to probe the column density of the gas, the elemental ratios of carbon and oxygen, and to trace the kinematics of the environment. We aim at estimating the abundances, excitation temperatures, velocity field and velocity dispersions of the three main CO isotopologues towards a subset of the Orion B molecular cloud. We use the Cramer Rao Bound (CRB) technique to analyze and estimate the precision of the physical parameters in the framework of local-thermodynamic-equilibrium excitation and radiative transfer with an additive white Gaussian noise. We propose a maximum likelihood estimator to infer the physical conditions from the 1-0 and 2-1 transitions of CO isotopologues. Simulations show that this estimator is unbiased and efficient for a common range of excitation temperatures and column densities (Tex > 6 K, N > 1e14 - 1e15 cm-2). Contrary to the general assumptions, the different CO isotopologues have distinct excitation temperatures, and the line intensity ratios between different isotopologues do not accurately reflect the column density ratios. We find mean fractional abundances that are consistent with previous determinations towards other molecular clouds. However, significant local deviations are inferred, not only in regions exposed to UV radiation field but also in shielded regions. These deviations result from the competition between selective photodissociation, chemical fractionation, and depletion on grain surfaces. We observe that the velocity dispersion of the C18O emission is 10% smaller than that of 13CO. The substantial gain resulting from the simultaneous analysis of two different rotational transitions of the same species is rigorously quantified. The CRB technique is a promising avenue for analyzing the estimation of physical parameters from the fit of spectral lines.

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GaussPy+: A fully automated Gaussian decomposition package for emission line spectra

Our understanding of the dynamics of the interstellar medium is informed by the study of the detailed velocity structure of emission line observations. One approach to study the velocity structure is to decompose the spectra into individual velocity components; this leads to a description of the dataset that is significantly reduced in complexity. However, this decomposition requires full automation lest it becomes prohibitive for large datasets, such as Galactic plane surveys. We developed GaussPy+, a fully automated Gaussian decomposition package that can be applied to emission line datasets, especially large surveys of HI and isotopologues of CO. We built our package upon the existing GaussPy algorithm and significantly improved its performance for noisy data. New functionalities of GaussPy+ include: i) automated preparatory steps, such as an accurate noise estimation, which can also be used as standalone applications; ii) an improved fitting routine; iii) an automated spatial refitting routine that can add spatial coherence to the decomposition results by refitting spectra based on neighbouring fit solutions. We thoroughly tested the performance of GaussPy+ on synthetic spectra and a test field from the Galactic Ring Survey. We found that GaussPy+ can deal with cases of complex emission and even low to moderate signal-to-noise values.

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A dynamically young, gravitationally stable network of filaments in Orion B

Filaments are a key step on the path that leads from molecular clouds to star formation. However, their characteristics are heavily debated, and the exact processes that lead to their formation and fragmentation into dense cores still remain to be fully understood. We aim at characterising the mass, kinematics, and stability against gravitational collapse of a statistically significant sample of filaments in the Orion B molecular cloud, which is renown for its very low star formation efficiency. We characterise the gas column densities and kinematics over a field of 1.9 deg$^2$, using C$^{18}$O(J=1-0) data from the IRAM-30m large programme ORION-B. Using two different Hessian-based filters, we extract and compare two filamentary networks, each containing over 100 filaments. Independent of the extraction method, the filaments have widths of 0.12$\pm$0.04 pc, and show a wide range of linear (1 - 100 $M_{\odot}$pc$^{-1}$) and volume densities (2.10$^3$ - 2.10$^5$ cm$^{-3}$). Compared to previous studies, the filament population is dominated by low-density, thermally sub-critical structures, suggesting that most of the identified filaments are not collapsing to form stars. In fact, only ~1% of the Orion B cloud mass covered by our observations can be found in super-critical, star-forming filaments, explaining the low star formation efficiency of the region. The velocity profiles observed across the filaments show quiescence in the centre, and coherency in the plane of the sky, despite being mostly supersonic. The filaments in Orion B apparently belong to a continuum which contains a few elements comparable to already studied star-forming filaments as well as many lower-density, gravitationally unbound structures. This comprehensive study of the Orion B filaments shows that the mass fraction in super-critical filaments is a key factor in determining star formation efficiency.

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Clustering the Orion B giant molecular cloud based on its molecular emission

Previous attempts at segmenting molecular line maps of molecular clouds have focused on using position-position-velocity data cubes of a single line to separate the spatial components of the cloud. In contrast, wide field spectral imaging with large spectral bandwidth in the (sub)mm domain now allows to combine multiple molecular tracers to understand the different physical and chemical phases that constitute giant molecular clouds. We aim at using multiple tracers (sensitive to different physical processes) to segment a molecular cloud into physically/chemically similar regions (rather than spatially connected components). We use a machine learning clustering method (the Meanshift algorithm) to cluster pixels with similar molecular emission, ignoring spatial information. Simple radiative transfer models are used to interpret the astrophysical information uncovered by the clustering. A clustering analysis based only on the J=1-0 lines of 12CO, 13CO and C18O reveals distinct density/column density regimes (nH~100, 500, and >1000 cm-3), closely related to the usual definitions of diffuse, translucent and high-column-density regions. Adding two UV-sensitive tracers, the (1-0) lines of HCO+ and CN, allows us to distinguish two clearly distinct chemical regimes, characteristic of UV-illuminated and UV-shielded gas. The UV-illuminated regime shows overbright HCO+ and CN emission, which we relate to photochemical enrichment. We also find a tail of high CN/HCO+ intensity ratio in UV-illuminated regions. Finer distinctions in density classes (nH~7E3, and 4E4 cm-3) for the densest regions are also identified, likely related to the higher critical density of the CN and HCO+ (1-0) lines. The association of simultaneous multi-line, wide-field mapping and powerful machine learning methods such as the Meanshift algorithm reveals how to decode the complex information available in molecular tracers.

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Turbulence and star formation efficiency in molecular clouds: solenoidal versus compressive motions in Orion B

The nature of turbulence in molecular clouds is one of the key parameters that control star formation efficiency: compressive motions, as opposed to solenoidal motions, can trigger the collapse of cores, or mark the expansion of Hii regions. We try to observationally derive the fractions of momentum density ($ρv$) contained in the solenoidal and compressive modes of turbulence in the Orion B molecular cloud and relate these fractions to the star formation efficiency in the cloud. The implementation of a statistical method developed by Brunt & Federrath (2014), applied to a $^{13}$CO(J=1-0) datacube obtained with the IRAM-30m telescope, allows us to retrieve 3-dimensional quantities from the projected quantities provided by the observations, yielding an estimate of the compressive versus solenoidal ratio in various regions of the cloud. Despite the Orion B molecular cloud being highly supersonic (mean Mach number $\sim$ 6), the fractions of motion in each mode diverge significantly from equipartition. The cloud's motions are on average mostly solenoidal (excess > 8 % with respect to equipartition), which is consistent with its low star formation rate. On the other hand, the motions around the main star-forming regions (NGC 2023 and NGC 2024) prove to be strongly compressive. We have successfully applied to observational data a method that was so far only tested on simulations, and have shown that there can be a strong intra-cloud variability of the compressive and solenoidal fractions, these fractions being in turn related to the star formation efficiency. This opens a new possibility for star-formation diagnostics in galactic molecular clouds.

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The anatomy of the Orion B Giant Molecular Cloud: A local template for studies of nearby galaxies

We aim to develop the Orion B Giant Molecular Cloud (GMC) as a local template for interpreting extra-galactic molecular line observations. We use the wide-band receiver at the IRAM-30m to spatially and spectrally resolve the Orion B GMC. The observations cover almost 1 square degree at 26" resolution with a bandwidth of 32 GHz from 84 to 116 GHz in only two tunings. Among the mapped spectral lines are the 12CO, 13CO, C18O, C17O, HCN, HNC, 12CN, CCH, HCO+, N2H+ (1-0), and 12CS, 32SO, SiO, c-C3H2, CH3OH (2-1) transitions. We introduce the molecular anatomy of the Orion B GMC, including relations between line intensities and gas column density or far-UV radiation fields, and correlations between selected line and line ratios. We also obtain a dust-traced gas mass that is less than about one third the CO-traced mass, using the standard Xco conversion factor. The presence of overluminous CO can be traced back to the dependence of the CO intensity on UV illumination. In fact, while most lines show some dependence on the UV radiation field, CN and CCH are the most sensitive. Moreover dense cloud cores are almost exclusively traced by N2H+. Other traditional high density tracers, such as HCN (1-0), are also easily detected in extended translucent regions at a typical density of about 500 H2 cm-3. In general, we find no straightforward relation between line critical density and the fraction of the line luminosity coming from dense gas regions. Our initial findings demonstrate that the relations between line (ratio) intensities and environment in GMCs are more complicated than often assumed. Sensitivity (i.e., the molecular column density), excitation, and above all chemistry contribute to the observed line intensity distributions. They must be considered together when developing the next generation of extra-galactic molecular line diagnostics of mass, density, temperature and radiation field.

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