Jannik Rau | Searcharxiv

arXiv2023

Computing $k$-Bisimulations for Large Graphs: A Comparison and Efficiency Analysis

Summarizing graphs w.r.t. structural features is important to reduce the graph's size and make tasks like indexing, querying, and visualization feasible. Our generic parallel BRS algorithm efficiently summarizes large graphs w.r.t. a custom equivalence relation $\sim$ defined on the graph's vertices $V$. Moreover, the definition of $\sim$ can be chained $k\geq 1$ times, so the defined equivalence relation becomes a $k$-bisimulation. We evaluate the runtime and memory performance of the BRS algorithm for $k$-bisimulation with $k=1,\ldots,10$ against two algorithms found in the literature (a sequential algorithm due to Kaushik et al. and a parallel algorithm of Schätzle et al.), which we implemented in the same software stack as BRS. We use five real-world and synthetic graph datasets containing 100 million to two billion edges. Our results show that the generic BRS algorithm outperforms the respective native bisimulation algorithms on all datasets for all $k\geq5$ and for smaller $k$ in some cases. The BRS implementations of the two bisimulation algorithms run almost as fast as each other. Thus, the BRS algorithm is an effective parallelization of the sequential Kaushik et al. bisimulation algorithm.

cs.DS↗

arXiv2022

Time and Memory Efficient Parallel Algorithm for Structural Graph Summaries and two Extensions to Incremental Summarization and $k$-Bisimulation for Long $k$-Chaining

We developed a flexible parallel algorithm for graph summarization based on vertex-centric programming and parameterized message passing. The base algorithm supports infinitely many structural graph summary models defined in a formal language. An extension of the parallel base algorithm allows incremental graph summarization. In this paper, we prove that the incremental algorithm is correct and show that updates are performed in time $\mathcal{O}(Δ\cdot d^k)$, where $Δ$ is the number of additions, deletions, and modifications to the input graph, $d$ the maximum degree, and $k$ is the maximum distance in the subgraphs considered. Although the iterative algorithm supports values of $k>1$, it requires nested data structures for the message passing that are memory-inefficient. Thus, we extended the base summarization algorithm by a hash-based messaging mechanism to support a scalable iterative computation of graph summarizations based on $k$-bisimulation for arbitrary $k$. We empirically evaluate the performance of our algorithms using benchmark and real-world datasets. The incremental algorithm almost always outperforms the batch computation. We observe in our experiments that the incremental algorithm is faster even in cases when $50\%$ of the graph database changes from one version to the next. The incremental computation requires a three-layered hash index, which has a low memory overhead of only $8\%$ ($\pm 1\%$). Finally, the incremental summarization algorithm outperforms the batch algorithm even with fewer cores. The iterative parallel $k$-bisimulation algorithm computes summaries on graphs with over $10$M edges within seconds. We show that the algorithm processes graphs of $100+\,$M edges within a few minutes while having a moderate memory consumption of $<150$ GB. For the largest BSBM1B dataset with 1 billion edges, it computes $k=10$ bisimulation in under an hour.

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