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Jarek Nabrzyski

Publications and source records attributed to Jarek Nabrzyski.

16 recordsLinked to original sources

ADRD-Bench: A Preliminary LLM Benchmark for Alzheimer's Disease and Related Dementias

Large language models (LLMs) have shown great potential for healthcare applications. However, existing evaluation benchmarks provide minimal coverage of Alzheimer's Disease and Related Dementias (ADRD). To address this gap, we introduce ADRD-Bench, a preliminary ADRD-specific LLM benchmark. ADRD-Bench has two components: 1) ADRD Unified QA, a synthesis of 1,438 questions consolidated from seven established medical benchmarks, providing a unified assessment of clinical knowledge; and 2) ADRD Caregiving QA, a novel set of 149 questions derived from a nationally adopted, large clinical trials supported brain health management program, mitigating the lack of practical caregiving context in existing benchmarks. We evaluated 36 state-of-the-art LLMs on the proposed ADRD-Bench. Results showed that the accuracy of open-weight general models, open-weight medical models, and frontier closed-source general models ranged from 0.63 to 0.93 (mean: 0.77; std: 0.09), 0.47 to 0.93 (mean: 0.81; std: 0.14), and 0.83 to 0.93 (mean: 0.90; std: 0.03), respectively. While top-tier models achieved high accuracies (>0.9), case studies revealed inconsistent reasoning quality and stability, highlighting a critical need for domain-specific improvement to enhance LLMs' knowledge and reasoning grounded in daily caregiving data. The entire dataset is available at https://github.com/IIRL-ND/ADRD-Bench.

cs.CL↗

ASAS-BridgeAMM: Trust-Minimized Cross-Chain Bridge AMM with Failure Containment

Cross-chain bridges constitute the single largest vector of systemic risk in Decentralized Finance (DeFi), accounting for over \$2.8 billion in losses since 2021. The fundamental vulnerability lies in the binary nature of existing bridge security models: a bridge is either fully operational or catastrophically compromised, with no intermediate state to contain partial failures. We present ASAS-BridgeAMM, a bridge-coupled automated market maker that introduces Contained Degradation: a formally specified operational state where the system gracefully degrades functionality in response to adversarial signals. By treating cross-chain message latency as a quantifiable execution risk, the protocol dynamically adjusts collateral haircuts, slippage bounds, and withdrawal limits. Across 18 months of historical replay on Ethereum and two auxiliary chains, ASAS-BridgeAMM reduces worst-case bridge-induced insolvency by 73% relative to baseline mint-and-burn architectures, while preserving 104.5% of transaction volume during stress periods. In rigorous adversarial simulations involving delayed finality, oracle manipulation, and liquidity griefing, the protocol maintains solvency with probability $>0.9999$ and bounds per-epoch bad debt to $<0.2%$ of total collateral. We provide a reference implementation in Solidity and formally prove safety (bounded debt), liveness (settlement completion), and manipulation resistance under a Byzantine relayer model.

cs.DC↗

Stablecoin Design with Adversarial-Robust Multi-Agent Systems via Trust-Weighted Signal Aggregation

Algorithmic stablecoins promise decentralized monetary stability by maintaining a target peg through programmatic reserve management. Yet, their reserve controllers remain vulnerable to regime-blind optimization, calibrating risk parameters on fair-weather data while ignoring tail events that precipitate cascading failures. The March 2020 Black Thursday collapse, wherein MakerDAO's collateral auctions yielded $8.3M in losses and a 15% peg deviation, exposed a critical gap: existing models like SAS systematically omit extreme volatility regimes from covariance estimates, producing allocations optimal in expectation but catastrophic under adversarial stress. We present MVF-Composer, a trust-weighted Mean-Variance Frontier reserve controller incorporating a novel Stress Harness for risk-state estimation. Our key insight is deploying multi-agent simulations as adversarial stress-testers: heterogeneous agents (traders, liquidity providers, attackers) execute protocol actions under crisis scenarios, exposing reserve vulnerabilities before they manifest on-chain. We formalize a trust-scoring mechanism T: A -> [0,1] that down-weights signals from agents exhibiting manipulative behavior, ensuring the risk-state estimator remains robust to signal injection and Sybil attacks. Across 1,200 randomized scenarios with injected Black-Swan shocks (10% collateral drawdown, 50% sentiment collapse, coordinated redemption attacks), MVF-Composer reduces peak peg deviation by 57% and mean recovery time by 3.1x relative to SAS baselines. Ablation studies confirm the trust layer accounts for 23% of stability gains under adversarial conditions, achieving 72% adversarial agent detection. Our system runs on commodity hardware, requires no on-chain oracles beyond standard price feeds, and provides a reproducible framework for stress-testing DeFi reserve policies.

q-fin.RM↗

Hybrid Stabilization Protocol for Cross-Chain Digital Assets Using Adaptor Signatures and AI-Driven Arbitrage

Stablecoins face an unresolved trilemma of balancing decentralization, stability, and regulatory compliance. We present a hybrid stabilization protocol that combines crypto-collateralized reserves, algorithmic futures contracts, and cross-chain liquidity pools to achieve robust price adherence while preserving user privacy. At its core, the protocol introduces stabilization futures contracts (SFCs), non-collateralized derivatives that programmatically incentivize third-party arbitrageurs to counteract price deviations via adaptor signature atomic swaps. Autonomous AI agents optimize delta hedging across decentralized exchanges (DEXs), while zkSNARKs prove compliance with anti-money laundering (AML) regulations without exposing identities or transaction details. Our cryptographic design reduces cross-chain liquidity concentration (Herfindahl-Hirschman Index: 2,400 vs. 4,900 in single-chain systems) and ensures atomicity under standard cryptographic assumptions. The protocol's layered architecture encompassing incentive-compatible SFCs, AI-driven market making, and zero-knowledge regulatory proofs. It provides a blueprint for next-generation decentralized financial infrastructure.

cs.CR↗

Characterizing Transfer Graphs of Suspicious ERC-20 Tokens

Ethereum is currently the second largest blockchain by market capitalization and a popular platform for cryptocurrencies. As it has grown, the high value present and the anonymity afforded by the technology have led Ethereum to become a hotbed for various cybercrimes. This paper seeks to understand how these fraudulent schemes may be characterized and develop methods for detecting them. One key feature introduced by Ethereum is the ability to use programmable smart contracts to execute code on the blockchain. A common use of smart contracts is implementing fungible tokens with the ERC-20 interface. Such tokens can be used to impersonate legitimate tokens and defraud users. By parsing the event logs emitted by these ERC-20 contracts over 20 different periods of 100K blocks, we construct token transfer graphs for each of the available ERC-20 tokens on the blockchain. By analyzing these graphs, we find a set of characteristics by which suspicious contracts are distinguished from legitimate ones. These observations result in a simple model that can identify scam contracts with an average of 88.7% accuracy. This suggests that the mechanism by which fraudulent schemes function strongly correlates with their transfer graphs and that these graphs may be used to improve scam-detection mechanisms, contributing to making Ethereum safer.

cs.CR↗

The Future of Document Verification: Leveraging Blockchain and Self-Sovereign Identity for Enhanced Security and Transparency

Attestation of documents like legal papers, professional qualifications, medical records, and commercial documents is crucial in global transactions, ensuring their authenticity, integrity, and trustworthiness. Companies expanding operations internationally need to submit attested financial statements and incorporation documents to foreign governments or business partners to prove their businesses and operations' authenticity, legal validity, and regulatory compliance. Attestation also plays a critical role in education, overseas employment, and authentication of legal documents such as testaments and medical records. The traditional attestation process is plagued by several challenges, including time-consuming procedures, the circulation of counterfeit documents, and concerns over data privacy in the attested records. The COVID-19 pandemic brought into light another challenge: ensuring physical presence for attestation, which caused a significant delay in the attestation process. Traditional methods also lack real-time tracking capabilities for attesting entities and requesters. This paper aims to propose a new strategy using decentralized technologies such as blockchain and self-sovereign identity to overcome the identified hurdles and provide an efficient, secure, and user-friendly attestation ecosystem.

cs.CR↗

A Multi-Party, Multi-Blockchain Atomic Swap Protocol with Universal Adaptor Secret

The increasing complexity of digital asset transactions across multiple blockchains necessitates a robust atomic swap protocol that can securely handle more than two participants. Traditional atomic swap protocols, including those based on adaptor signatures, are vulnerable to malicious dropout attacks, which break atomicity and compromise the security of the transaction. This paper presents a novel multi-party atomic swap protocol that operates almost entirely off-chain, requiring only a single on-chain transaction for finalization. Our protocol leverages Schnorr-like signature verification and a universal adaptor secret to ensure atomicity and scalability across any number of participants and blockchains without the need for smart contracts or trusted third parties. By addressing key challenges such as collusion attacks and malicious dropouts, our protocol significantly enhances the security and efficiency of multi-party atomic swaps. Our contributions include the first scalable, fully off-chain protocol for atomic swaps involving any number of participants, adding zero overhead to native blockchains, and providing a practical and cost-effective solution for decentralized asset exchanges.

cs.CR↗

Providing Assurance and Scrutability on Shared Data and Machine Learning Models with Verifiable Credentials

Adopting shared data resources requires scientists to place trust in the originators of the data. When shared data is later used in the development of artificial intelligence (AI) systems or machine learning (ML) models, the trust lineage extends to the users of the system, typically practitioners in fields such as healthcare and finance. Practitioners rely on AI developers to have used relevant, trustworthy data, but may have limited insight and recourse. This paper introduces a software architecture and implementation of a system based on design patterns from the field of self-sovereign identity. Scientists can issue signed credentials attesting to qualities of their data resources. Data contributions to ML models are recorded in a bill of materials (BOM), which is stored with the model as a verifiable credential. The BOM provides a traceable record of the supply chain for an AI system, which facilitates on-going scrutiny of the qualities of the contributing components. The verified BOM, and its linkage to certified data qualities, is used in the AI Scrutineer, a web-based tool designed to offer practitioners insight into ML model constituents and highlight any problems with adopted datasets, should they be found to have biased data or be otherwise discredited.

cs.LG↗

Blueprint: Cyberinfrastructure Center of Excellence

In 2018, NSF funded an effort to pilot a Cyberinfrastructure Center of Excellence (CI CoE or Center) that would serve the cyberinfrastructure (CI) needs of the NSF Major Facilities (MFs) and large projects with advanced CI architectures. The goal of the CI CoE Pilot project (Pilot) effort was to develop a model and a blueprint for such a CoE by engaging with the MFs, understanding their CI needs, understanding the contributions the MFs are making to the CI community, and exploring opportunities for building a broader CI community. This document summarizes the results of community engagements conducted during the first two years of the project and describes the identified CI needs of the MFs. To better understand MFs' CI, the Pilot has developed and validated a model of the MF data lifecycle that follows the data generation and management within a facility and gained an understanding of how this model captures the fundamental stages that the facilities' data passes through from the scientific instruments to the principal investigators and their teams, to the broader collaborations and the public. The Pilot also aimed to understand what CI workforce development challenges the MFs face while designing, constructing, and operating their CI and what solutions they are exploring and adopting within their projects. Based on the needs of the MFs in the data lifecycle and workforce development areas, this document outlines a blueprint for a CI CoE that will learn about and share the CI solutions designed, developed, and/or adopted by the MFs, provide expertise to the largest NSF projects with advanced and complex CI architectures, and foster a community of CI practitioners and researchers.

cs.DC↗

Simulation of Thermal Relaxation in Spin Chemistry Systems on a Quantum Computer Using Inherent Qubit Decoherence

Current and near term quantum computers (i.e. NISQ devices) are limited in their computational power in part due to qubit decoherence. Here we seek to take advantage of qubit decoherence as a resource in simulating the behavior of real world quantum systems, which are always subject to decoherence, with no additional computational overhead. As a first step toward this goal we simulate the thermal relaxation of quantum beats in radical ion pairs (RPs) on a quantum computer as a proof of concept of the method. We present three methods for implementing the thermal relaxation, one which explicitly applies the relaxation Kraus operators, one which combines results from two separate circuits in a classical post-processing step, and one which relies on leveraging the inherent decoherence of the qubits themselves. We use our methods to simulate two real world systems and find excellent agreement between our results, experimental data, and the theoretical prediction.

quant-ph↗

Toward Enabling Reproducibility for Data-Intensive Research using the Whole Tale Platform

Whole Tale http://wholetale.org is a web-based, open-source platform for reproducible research supporting the creation, sharing, execution, and verification of "Tales" for the scientific research community. Tales are executable research objects that capture the code, data, and environment along with narrative and workflow information needed to re-create computational results from scientific studies. Creating reproducible research objects that enable reproducibility, transparency, and re-execution for computational experiments requiring significant compute resources or utilizing massive data is an especially challenging open problem. We describe opportunities, challenges, and solutions to facilitating reproducibility for data- and compute-intensive research, that we call "Tales at Scale," using the Whole Tale computing platform. We highlight challenges and solutions in frontend responsiveness needs, gaps in current middleware design and implementation, network restrictions, containerization, and data access. Finally, we discuss challenges in packaging computational experiment implementations for portable data-intensive Tales and outline future work.

cs.DC↗

Certifying Provenance of Scientific Datasets with Self-sovereign Identity and Verifiable Credentials

In order to increase the value of scientific datasets and improve research outcomes, it is important that only trustworthy data is used. This paper presents mechanisms by which scientists and the organisations they represent can certify the authenticity of characteristics and provenance of any datasets they publish so that secondary users can inspect and gain confidence in the qualities of data they source. By drawing on data models and protocols used to provide self-sovereign ownership of identity and personal data to individuals, we conclude that providing self-sovereignty to data assets offers a viable approach for institutions to certify qualities of their datasets in a cryptography secure manner, and enables secondary data users to efficiently perform verification of the authenticity of such certifications. By building upon emerging standards for decentralized identification and cryptographically verifiable credentials, we envisage an infrastructure of tools being developed to foster adoption of metadata certification schemes, and improving the quality of information provided in support of shared data assets.

cs.CR↗

Techniques and Applications for Crawling, Ingesting and Analyzing Blockchain Data

As the public Ethereum network surpasses half a billion transactions and enterprise Blockchain systems becoming highly capable of meeting the demands of global deployments, production Blockchain applications are fast becoming commonplace across a diverse range of business and scientific verticals. In this paper, we reflect on work we have been conducting recently surrounding the ingestion, retrieval and analysis of Blockchain data. We describe the scaling and semantic challenges when extracting Blockchain data in a way that preserves the original metadata of each transaction by cross referencing the Smart Contract interface with the on-chain data. We then discuss a scientific use case in the area of Scientific workflows by describing how we can harvest data from tasks and dependencies in a generic way. We then discuss how crawled public blockchain data can be analyzed using two unsupervised machine learning algorithms, which are designed to identify outlier accounts or smart contracts in the system. We compare and contrast the two machine learning methods and cross correlate with public Websites to illustrate the effectiveness such approaches.

cs.CR↗

Cyberinfrastructure Requirements to Enhance Multi-messenger Astrophysics

The identification of the electromagnetic counterpart of the gravitational wave event, GW170817, and discovery of neutrinos and gamma-rays from TXS 0506+056 heralded the new era of multi-messenger astrophysics. As the number of multi-messenger events rapidly grow over the next decade, the cyberinfrastructure requirements to handle the increase in data rates, data volume, need for event follow up, and analysis across the different messengers will also explosively grow. The cyberinfrastructure requirements to enhance multi-messenger astrophysics will both be a major challenge and opportunity for astronomers, physicists, computer scientists and cyberinfrastructure specialists. Here we outline some of these requirements and argue for a distributed cyberinfrastructure institute for multi-messenger astrophysics to meet these challenges.

astro-ph.IM↗

Computing Environments for Reproducibility: Capturing the "Whole Tale"

The act of sharing scientific knowledge is rapidly evolving away from traditional articles and presentations to the delivery of executable objects that integrate the data and computational details (e.g., scripts and workflows) upon which the findings rely. This envisioned coupling of data and process is essential to advancing science but faces technical and institutional barriers. The Whole Tale project aims to address these barriers by connecting computational, data-intensive research efforts with the larger research process--transforming the knowledge discovery and dissemination process into one where data products are united with research articles to create "living publications" or "tales". The Whole Tale focuses on the full spectrum of science, empowering users in the long tail of science, and power users with demands for access to big data and compute resources. We report here on the design, architecture, and implementation of the Whole Tale environment.

cs.CY↗

Grid Computing: The Next Decade -- Report and Summary

The evolution of the global scientific cyberinfrastructure (CI) has, over the last 10+ years, led to a large diversity of CI instances. While specialized, competing and alternative CI building blocks are inherent to a healthy ecosystem, it also becomes apparent that the increasing degree of fragmentation is hindering interoperation, and thus limiting collaboration, which is essential for modern science communities often spanning international groups and multiple disciplines (but even 'small sciences', with smaller and localized communities, are often embedded into the larger scientific ecosystem, and are increasingly dependent on the availability of CI.) There are different reasons why fragmentation occurs, on technical and social level. But also, it is apparent that the current funding model for creating CI components largely fails to aid the transition from research to production, by mixing CS research and IT engineering challenges into the same funding strategies. The 10th anniversary of the EU funded project 'Grid Lab' (which was an early and ambitious attempt on providing a consolidated and science oriented cyberinfrastructure software stack to a specific science community) was taken as an opportunity to invite international leaders and early stage researchers in grid computing and e-Science from Europe, America and Asia, and, together with representatives of the EU and US funding agencies, to discuss the fundamental aspects of CI evolution, and to contemplate the options for a more coherent, more coordinated approach to the global evolution of CI. This open document represents the results of that workshop - including a draft of a mission statement and a proposal for a blueprint process - to inform the wider community as well as to encourage external experts to provide their feedback and comments.

cs.DC↗