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Jaroslav Nesetril

Publications and source records attributed to Jaroslav Nesetril.

34 records · Page 2Linked to original sources

Polynomial graph invariants from homomorphism numbers

We give a method of generating strongly polynomial sequences of graphs, i.e., sequences $(H_{\mathbf{k}})$ indexed by a multivariate parameter $\mathbf{k}=(k_1,\ldots, k_h)$ such that, for each fixed graph $G$, there is a multivariate polynomial $p(G;x_1,\ldots, x_h)$ such that the number of homomorphisms from $G$ to $H_{\mathbf{k}}$ is given by the evaluation $p(G;k_1,\ldots, k_h)$. A classical example is the sequence $(K_k)$ of complete graphs, for which ${\rm hom}(G,K_k)=P(G;k)$ is the evaluation of the chromatic polynomial at $k$. Our construction produces a large family of graph polynomials that includes the Tutte polynomial, the Averbouch-Godlin-Makowsky polynomial and the Tittmann-Averbouch-Makowsky polynomial. We also introduce a new graph parameter, the {\em branching core size} of a simple graph, related to how many involutive automorphisms with fixed points it has. We prove that a countable family of graphs of bounded branching core size (which in particular implies bounded tree-depth) is always contained in a finite union of strongly polynomial sequences.

math.CO↗

A Model Theory Approach to Structural Limits

The goal of this paper is to unify two lines in a particular area of graph limits. First, we generalize and provide unified treatment of various graph limit concepts by means of a combination of model theory and analysis. Then, as an example, we generalize limits of bounded degree graphs from subgraph testing to finite model testing.

math.CO↗

A note on Fiedler value of classes with sublinear separators

The $n$-th Fiedler value of a class of graphs $\mathcal C$ is the maximum second eigenvalue $λ_2(G)$ of a graph $G\in\mathcal C$ with $n$ vertices. In this note we relate this value to shallow minors and, as a corollary, we determine the right order of the $n$-th Fiedler value for some minor closed classes of graphs, including the class of planar graphs.

math.CO↗

Entromics -- thermodynamics of sequence dependent base incorporation into DNA reveals novel long-distance genome organization

Zero mode waveguide technology of next generation sequencing demonstrated sequence-dependence of the enzymatic reaction, incorporating a base into the genomic DNA. We show that these experimental results indicate existence of a previously uncharacterized physical property of DNA, the incorporation reaction chemical potential Δμ. We use the combination of graph theory and statistical thermodynamics to derive entromics - a series of results providing the thermodynamic model of Δμ. We also show that Δμi is quantitatively characterized as incorporation entropy. We present formulae for computing Δμ from the genome DNA sequence. We then derive important restrictions on DNA properties and genome assembly that follow from thermodynamic properties of Δμ. Finally, we show how these genome assembly restrictions lead directly to the evolution of detectable coherences in incorporation entropy along the entire genome. Examples of entromic applications, demonstrating functional and biological importance are shown.

q-bio.OT↗

Colouring Edges with many Colours in Cycles

The arboricity of a graph G is the minimum number of colours needed to colour the edges of G so that every cycle gets at least two colours. Given a positive integer p, we define the generalized p-arboricity Arb_p(G) of a graph G as the minimum number of colours needed to colour the edges of a multigraph G in such a way that every cycle C gets at least min(|C|; p + 1) colours. In the particular case where G has girth at least p + 1, Arb_p(G) is the minimum size of a partition of the edge set of G such that the union of any p parts induce a forest. If we require further that the edge colouring be proper, i.e., adjacent edges receive distinct colours, then the minimum number of colours needed is the generalized p-acyclic edge chromatic number of G. In this paper, we relate the generalized p-acyclic edge chromatic numbers and the generalized p-arboricities of a graph G to the density of the multigraphs having a shallow subdivision as a subgraph of G.

math.CO↗

Interleaved adjoints on directed graphs

For an integer k >= 1, the k-th interlacing adjoint of a digraph G is the digraph i_k(G) with vertex-set V(G)^k, and arcs ((u_1, ..., u_k), (v_1, ..., v_k)) such that (u_i,v_i) \in A(G) for i = 1, ..., k and (v_i, u_{i+1}) \in A(G) for i = 1, ..., k-1. For every k we derive upper and lower bounds for the chromatic number of i_k(G) in terms of that of G. In particular, we find tight bounds on the chromatic number of interlacing adjoints of transitive tournaments. We use this result in conjunction with categorial properties of adjoint functors to derive the following consequence. For every integer ell, there exists a directed path Q_{\ell} of algebraic length ell which admits homomorphisms into every directed graph of chromatic number at least 4. We discuss a possible impact of this approach on the multifactor version of the weak Hedetniemi conjecture.

math.CO↗

Some examples of universal and generic partial orders

We survey structures endowed with natural partial orderings and prove their universality. These partial orders include partial orders on sets of words, partial orders formed by geometric objects, grammars, polynomials and homomorphism order for various combinatorial objects.

math.CO↗

Splitting finite antichains in the homomorphism order

A structural condition is given for finite maximal antichains in the homomorphism order of relational structures to have the splitting property. It turns out that non-splitting antichains appear only at the bottom of the order. Moreover, we examine looseness and finite antichain extension property for some subclasses of the homomorphism poset. Finally, we take a look at cut-points in this order.

math.CO↗

NP by means of lifts and shadows

We show that every NP problem is polynomially equivalent to a simple combinatorial problem: the membership problem for a special class of digraphs. These classes are defined by means of shadows (projections) and by finitely many forbidden colored (lifted) subgraphs. Our characterization is motivated by the analysis of syntactical subclasses with the full computational power of NP, which were first studied by Feder and Vardi. Our approach applies to many combinatorial problems and it induces the characterization of coloring problems (CSP) defined by means of shadows. This turns out to be related to homomorphism dualities. We prove that a class of digraphs (relational structures) defined by finitely many forbidden colored subgraphs (i.e. lifted substructures) is a CSP class if and only if all the the forbidden structures are homomorphically equivalent to trees. We show a surprising richness of coloring problems when restricted to most frequent graph classes. Using results of Nešetřil and Ossona de Mendez for bounded expansion classes (which include bounded degree and proper minor closed classes) we prove that the restriction of every class defined as the shadow of finitely many colored subgraphs equals to the restriction of a coloring (CSP) class.

cs.CC↗

Forbidden lists (NP and CSP for combinatorialists)

We present a definition of the class NP in combinatorial context as the set of languages of structures defined by finitely many forbidden lifted substructures. We apply this to special syntactically defined subclasses and show how they correspond to naturally defined (and intensively studied) combinatorial problems. We show that some types of combinatorial problems like edge colorings and graph decompositions express the full computational power of the class NP. We then characterize Constraint Satisfaction Problems (i.e. H-coloring problems) which are expressible by finitely many forbidden lifted substructures. This greatly simplifies and generalizes the earlier attempts to characterize this problem. As a corollary of this approach we perhaps find a proper setting of Feder and Vardi analysis of CSP languages within the class MMSNP.

math.CO↗

On tension-continuous mapings

Tension-continuous (shortly TT) mappings are mappings between the edge sets of graphs. They generalize graph homomorphisms. From another perspective, tension-continuous mappings are dual to the notion of flow-continuous mappings and the context of nowhere-zero flows motivates several questions considered in this paper. Extending our earlier research we define new constructions and operations for graphs (such as graphs Delta(G)) and give evidence for the complex relationship of homomorphisms and TT mappings. Particularly, solving an open problem, we display pairs of TT-comparable and homomorphism-incomparable graphs with arbitrarily high connectivity. We give a new (and more direct) proof of density of TT order and study graphs such that TT mappings and homomorphisms from them coincide; we call such graphs homotens. We show that most graphs are homotens, on the other hand every vertex of a nontrivial homotens graph is contained in a triangle. This provides a justification for our construction of homotens graphs.

math.CO↗

Grad and Classes with Bounded Expansion II. Algorithmic Aspects

Classes of graphs with bounded expansion are a generalization of both proper minor closed classes and degree bounded classes. Such classes are based on a new invariant, the greatest reduced average density (grad) of G with rank r, ∇r(G). These classes are also characterized by the existence of several partition results such as the existence of low tree-width and low tree-depth colorings. These results lead to several new linear time algorithms, such as an algorithm for counting all the isomorphs of a fixed graph in an input graph or an algorithm for checking whether there exists a subset of vertices of a priori bounded size such that the subgraph induced by this subset satisfies some arbirtrary but fixed first order sentence. We also show that for fixed p, computing the distances between two vertices up to distance p may be performed in constant time per query after a linear time preprocessing. We also show, extending several earlier results, that a class of graphs has sublinear separators if it has sub-exponential expansion. This result result is best possible in general.

math.CO↗

Grad and classes with bounded expansion I. decompositions

We introduce classes of graphs with bounded expansion as a generalization of both proper minor closed classes and degree bounded classes. Such classes are based on a new invariant, the greatest reduced average density (grad) of G with rank r, grad r(G). For these classes we prove the existence of several partition results such as the existence of low tree-width and low tree-depth colorings. This generalizes and simplifies several earlier results (obtained for minor closed classes).

math.CO↗

Grad and classes with bounded expansion III. restricted dualities

We study restricted homomorphism dualities in the context of classes with bounded expansion. This presents a generalization of restricted dualities obtained earlier for bounded degree graphs and also for proper minor closed classes. This is related to distance coloring of graphs and to the ''approximative version'' of Hadwiger conjecture.

math.CO↗

Tension continuous maps--their structure and applications

We consider mappings between edge sets of graphs that lift tensions to tensions. Such mappings are called tension-continuous mappings (shortly TT mappings). Existence of a TT mapping induces a (quasi)order on the class of graphs, which seems to be an essential extension of the homomorphism order (studied extensively, see [Hell-Nesetril]). In this paper we study the relationship of the homomorphism and TT orders. We stress the similarities and the differences in both deterministic and random setting. Particularly, we prove that TT order is dense and universal and we solve a problem of M. DeVos et al.

math.CO↗