arXiv subjects

Jean-Baptiste Féret

Publications and source records attributed to Jean-Baptiste Féret.

3 recordsLinked to original sources

arXiv2025

Coupling in situ and remote sensing data to assess $α$- and $β$-diversity over biogeographic gradients

The mapping of plant biodiversity represents a fundamental stage in establishing conservation priorities, particularly in identifying groups of species that share ecological requirements or evolutionary histories. This is often achieved by assessing different spatial diversity patterns in plant population distributions. In this paper, we present two primary data sources crucial for biodiversity monitoring: in situ measurements from botanical observations and remote sensing (RS). In situ methods involve directly collecting data from specific sites, providing detailed insights into ecological patterns but often constrained by resource limitations. Integrating in situ and RS data highlights their complementary strengths, which depend on factors such as study scale, resolution, and logistical feasibility. While in situ approaches are characterized by precision, RS offers efficiency and extensive, repeated coverage. This research integrates in situ and RS data to analyze plant and spectral diversity across France at a spatial resolution of 5 km, encompassing over 23,000 grid cells. We employ four established diversity metrics leveraging the spatial distribution of 6,650 plant species and 250 spectral clusters (derived from MODIS data at a 500-meter resolution). Through bioregionalization network analysis combining these data sources, we identified five distinct bioregions that capture the biogeographical structure of plant biodiversity in France. Additionally, we explore the relationship between plant species diversity and spectral cluster diversity within and between these bioregions, offering novel insights into the spatial dynamics of plant biodiversity.

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arXiv2020

Retrieval of aboveground crop nitrogen content with a hybrid machine learning method

Hyperspectral acquisitions have proven to be the most informative Earth observation data source for the estimation of nitrogen (N) content, which is the main limiting nutrient for plant growth and thus agricultural production. In the past, empirical algorithms have been widely employed to retrieve information on this biochemical plant component from canopy reflectance. However, these approaches do not seek for a cause-effect relationship based on physical laws. Moreover, most studies solely relied on the correlation of chlorophyll content with nitrogen, and thus neglected the fact that most N is bound in proteins. Our study presents a hybrid retrieval method using a physically-based approach combined with machine learning regression to estimate crop N content. Within the workflow, the leaf optical properties model PROSPECT-PRO including the newly calibrated specific absorption coefficients (SAC) of proteins, was coupled with the canopy reflectance model 4SAIL to PROSAIL-PRO. The latter was then employed to generate a training database to be used for advanced probabilistic machine learning methods: a standard homoscedastic Gaussian process (GP) and a heteroscedastic GP regression that accounts for signal-to-noise relations. Both GP models have the property of providing confidence intervals for the estimates, which sets them apart from other machine learners. GP-based band analysis identified optimal spectral settings with ten bands mainly situated in the shortwave infrared (SWIR) spectral region. Use of well-known protein absorption bands from the literature showed comparative results. Finally, the heteroscedastic GP model was successfully applied on airborne hyperspectral data for N mapping. We conclude that GP algorithms, and in particular the heteroscedastic GP, should be implemented for global agricultural monitoring of aboveground N from future imaging spectroscopy data.

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arXiv2020

PROSPECT-PRO for estimating content of nitrogen-containing leaf proteins and other carbon-based constituents

Models of radiative transfer (RT) are important tools for remote sensing of vegetation, as they facilitate forward simulations of remotely sensed data as well as inverse estimation of biophysical and biochemical properties from vegetation optical properties. The remote sensing estimation of foliar protein content is a key to monitoring the nitrogen cycle in terrestrial ecosystems in particular to better understand photosynthetic capacity of plants and improve nitrogen management in agriculture. However, no physically based leaf RT model currently allows for proper decomposition of leaf dry matter into nitrogen-based proteins and carbon-based constituents (CBC), estimated from optical properties of fresh or dry foliage. We developed a new version of the PROSPECT model, named PROSPECT-PRO, which separates nitrogen-based constituents (proteins) from CBC (including cellulose, lignin, hemicellulose and starch). PROSPECT-PRO was calibrated and validated on subsets of the LOPEX dataset, accounting for both fresh and dry broadleaf and grass samples. We applied an iterative model inversion optimization algorithm to identify optimal spectral subdomains for retrieval of leaf protein and CBC contents, with 2125-2174 nm optimal for proteins and 2025-2349 nm optimal for CBCs. PROSPECT-PRO inversions revealed a better performance in estimating proteins from optical properties of fresh than dry leaves. We further tested the ability of PROSPECT-PRO to estimate leaf mass per area (LMA) as the sum of proteins and CBC using independent datasets acquired for numerous plant species. Results showed that PROSPECT-PRO is fully compatible and comparable with its predecessor PROSPECT-D in indirect estimation of LMA. We can conclude from findings of this study that PROSPECT-PRO has a high potential in establishing the carbon-to-nitrogen ratio based on the retrieved CBC-to-proteins ratio.

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