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Jean-François Allemand

Publications and source records attributed to Jean-François Allemand.

3 recordsLinked to original sources

Controlling microalgae populations by phototactic memory

Understanding how microorganisms navigate in complex environments is a central question in active matter and biological physics. Phototaxis - the ability to use light as a navigation cue - is a widespread strategy in motile microalgae to optimise photosynthesis and avoid light-induced stress. The microalga Chlamydomonas reinhardtii is a model system for studying this behaviour, where navigation is classically attributed to a photosensitive organelle named eyespot. While this mechanism enables cells to sense the direction of incoming light, their response to light intensity gradients remains less understood. Here we show that structured light landscapes can guide microalgae populations and localise them in defined spatial regions. By analysing single-cell trajectories, we find that cells actively steer relative to the local light gradient, and a comparison with a minimal theoretical model shows that a short-time memory of light exposure acting on the transition between positive and negative phototaxis is necessary to reproduce the observed accumulation. At longer times, we observe a gradual decrease in cell number density within the trapping region, consistent with phototactic adaptation. Beyond controlling population dynamics, our results reveal new aspects of phototactic behaviour, highlighting gradient-aligned steering together with temporal integration as central mechanisms for navigation in structured environments.

cond-mat.soft↗

Stereo Darkfield Interferometry : a versatile localization method for subnanometer force spectroscopy of single molecules and 3D-tracking of single cells

Super-resolutive 3D tracking, such as PSF engineering or evanescent field imaging has long been used to track microparticles and to enhance the throughput of single molecules force spectroscopic measurements. However, current methods present two drawbacks. First, they lack precision compared with optical tweezers or AFM. Second, the dependence of their signal upon the position is complex creating the need for a time-consuming calibration step. Here, we introduce a new optical technique that circumvents both issues and allows for a simple, versatile and efficient 3D tracking of diluted particles while offering a sub-nanometer frame-to-frame precision in all three spatial directions. The principle is to combine stereoscopy and interferometry, such that the z (axial) position is measured through the distance between two interferometric fringe patterns. The linearity of this stereoscopy technique alleviates the need for lookup tables while the structured interferometric pattern enhances precision. On the other hand, the extended spatial footprint of this PSF maximizes the number of photons detected per frame without the need of fancy cameras, nor the need for complex hardware. Hence, thanks to its simplicity and versatility, we believe that SDI (Stereo Darkfield Interferometry) technology has the potential to significantly enhance the spreading of 3D tracking. We demonstrate the efficiency of this technique on various single-molecule measurements thanks to magnetic tweezers. In particular we demonstrate the precise quantification of two-state dynamics involving axial steps as short as 1 nm. We then show that SDI can be directly embedded in a commercial objective providing a means to track multiple single cells in 3D .

physics.bio-ph↗

Torque determination on DNA with magnetic tweezers

We deduced the torque applied on a single stretched and twisted DNA by integrating with respect to force the change in the molecule's extension as it is coiled. While consistent with previous direct measurements of the torque at high forces (F>1 pN) this method, which is simple and does not require a sophisticated set-up, allows for lower force estimates. We used this approach to deduce the effective torsional modulus of DNA, which decreases with force and to estimate the buckling torque of DNA as a function of force in various salt conditions.

cond-mat.soft↗