arXiv subjects

Jean-Pierre Tasu

Publications and source records attributed to Jean-Pierre Tasu.

7 recordsLinked to original sources

arXiv2025

Material Decomposition in Photon-Counting Computed Tomography with Diffusion Models: Comparative Study and Hybridization with Variational Regularizers

Photon-counting computed tomography (PCCT) has emerged as a promising imaging technique, enabling spectral imaging and material decomposition (MD). However, images typically suffer from a low signal-to-noise ratio (SNR) due to constraints such as low photon counts and sparse-view settings which provoke artifacts. To prevent this, variational methods minimize a data-fit function coupled with handcrafted regularizers that mimic a prior by enforcing image properties such as gradient sparsity. In the last few years, diffusion models (DMs) have become predominant in the field of generative models and have been used as a learned prior for image reconstruction. This work investigates the use of DMs as regularizers for MD tasks in PCCT, specifically using diffusion posterior sampling (DPS) guidance. Three DPS-based approaches -- image-domain two-step DPS (im-TDPS), projection-domain two-step DPS (proj-TDPS), and one-step DPS (ODPS) -- are evaluated. The first two methods achieve MD in two steps by performing reconstruction and MD separately. The last method, ODPS, samples the material images directly from the measurement data. The results indicate that ODPS achieves superior performance compared to im-TDPS and proj-TDPS, providing sharper, noise-free and crosstalk-free images. Furthermore, we introduce a novel hybrid method for scenarios involving materials absent from the training dataset which combines DM priors with standard variational handcrafted regularizers for the materials unknown to the DM. This hybrid method demonstrates improved MD quality compared to a standard variational method and does not require additional training of the DM neural network (NN).

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arXiv2024

Semi-overcomplete convolutional auto-encoder embedding as shape priors for deep vessel segmentation

The extraction of blood vessels has recently experienced a widespread interest in medical image analysis. Automatic vessel segmentation is highly desirable to guide clinicians in computer-assisted diagnosis, therapy or surgical planning. Despite a good ability to extract large anatomical structures, the capacity of U-Net inspired architectures to automatically delineate vascular systems remains a major issue, especially given the scarcity of existing datasets. In this paper, we present a novel approach that integrates into deep segmentation shape priors from a Semi-Overcomplete Convolutional Auto-Encoder (S-OCAE) embedding. Compared to standard Convolutional Auto-Encoders (CAE), it exploits an over-complete branch that projects data onto higher dimensions to better characterize tiny structures. Experiments on retinal and liver vessel extraction, respectively performed on publicly-available DRIVE and 3D-IRCADb datasets, highlight the effectiveness of our method compared to U-Net trained without and with shape priors from a traditional CAE.

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arXiv2024

Scale-specific auxiliary multi-task contrastive learning for deep liver vessel segmentation

Extracting hepatic vessels from abdominal images is of high interest for clinicians since it allows to divide the liver into functionally-independent Couinaud segments. In this respect, an automated liver blood vessel extraction is widely summoned. Despite the significant growth in performance of semantic segmentation methodologies, preserving the complex multi-scale geometry of main vessels and ramifications remains a major challenge. This paper provides a new deep supervised approach for vessel segmentation, with a strong focus on representations arising from the different scales inherent to the vascular tree geometry. In particular, we propose a new clustering technique to decompose the tree into various scale levels, from tiny to large vessels. Then, we extend standard 3D UNet to multi-task learning by incorporating scale-specific auxiliary tasks and contrastive learning to encourage the discrimination between scales in the shared representation. Promising results, depicted in several evaluation metrics, are revealed on the public 3D-IRCADb dataset.

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arXiv2024

Diffusion Posterior Sampling for Synergistic Reconstruction in Spectral Computed Tomography

Using recent advances in generative artificial intelligence (AI) brought by diffusion models, this paper introduces a new synergistic method for spectral computed tomography (CT) reconstruction. Diffusion models define a neural network to approximate the gradient of the log-density of the training data, which is then used to generate new images similar to the training ones. Following the inverse problem paradigm, we propose to adapt this generative process to synergistically reconstruct multiple images at different energy bins from multiple measurements. The experiments suggest that using multiple energy bins simultaneously improves the reconstruction by inverse diffusion and outperforms state-of-the-art synergistic reconstruction techniques.

physics.med-ph↗

arXiv2024

Spectral CT Two-step and One-step Material Decomposition using Diffusion Posterior Sampling

This paper proposes a novel approach to spectral computed tomography (CT) material decomposition that uses the recent advances in generative diffusion models (DMs) for inverse problems. Spectral CT and more particularly photon-counting CT (PCCT) can perform transmission measurements at different energy levels which can be used for material decomposition. It is an ill-posed inverse problem and therefore requires regularization. DMs are a class of generative model that can be used to solve inverse problems via diffusion posterior sampling (DPS). In this paper we adapt DPS for material decomposition in a PCCT setting. We propose two approaches, namely Two-step Diffusion Posterior Sampling (TDPS) and One-step Diffusion Posterior Sampling (ODPS). Early results from an experiment with simulated low-dose PCCT suggest that DPSs have the potential to outperform state-of-the-art model-based iterative reconstruction (MBIR). Moreover, our results indicate that TDPS produces material images with better peak signal-to-noise ratio (PSNR) than images produced with ODPS with similar structural similarity (SSIM).

physics.med-ph↗

arXiv2023

Uconnect: Synergistic Spectral CT Reconstruction with U-Nets Connecting the Energy bins

Spectral computed tomography (CT) offers the possibility to reconstruct attenuation images at different energy levels, which can be then used for material decomposition. However, traditional methods reconstruct each energy bin individually and are vulnerable to noise. In this paper, we propose a novel synergistic method for spectral CT reconstruction, namely Uconnect. It utilizes trained convolutional neural networks (CNNs) to connect the energy bins to a latent image so that the full binned data is used synergistically. We experiment on two types of low-dose data: simulated and real patient data. Qualitative and quantitative analysis show that our proposed Uconnect outperforms state-of-art model-based iterative reconstruction (MBIR) techniques as well as CNN-based denoising.

physics.med-ph↗

arXiv2022

Multi-Channel Convolutional Analysis Operator Learning for Dual-Energy CT Reconstruction

Objective. Dual-energy computed tomography (DECT) has the potential to improve contrast, reduce artifacts and the ability to perform material decomposition in advanced imaging applications. The increased number or measurements results with a higher radiation dose and it is therefore essential to reduce either number of projections per energy or the source X-ray intensity, but this makes tomographic reconstruction more ill-posed. Approach. We developed the multi-channel convolutional analysis operator learning (MCAOL) method to exploit common spatial features within attenuation images at different energies and we propose an optimization method which jointly reconstructs the attenuation images at low and high energies with a mixed norm regularization on the sparse features obtained by pre-trained convolutional filters through the convolutional analysis operator learning (CAOL) algorithm. Main results. Extensive experiments with simulated and real computed tomography (CT) data were performed to validate the effectiveness of the proposed methods and we reported increased reconstruction accuracy compared to CAOL and iterative methods with single and joint total-variation (TV) regularization. Significance. Qualitative and quantitative results on sparse-views and low-dose DECT demonstrate that the proposed MCAOL method outperforms both CAOL applied on each energy independently and several existing state-of-the-art model-based iterative reconstruction (MBIR) techniques, thus paving the way for dose reduction.

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