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Jeffrey J. Donatelli

Publications and source records attributed to Jeffrey J. Donatelli.

4 recordsLinked to original sources

Nonuniform Iterative Phasing Framework and Sampling Requirements for 3D Dynamical Inversion from Coherent Surface Scattering Imaging

Coherent surface scattering imaging (CSSI) is an emerging experimental technique uniquely suited to probing the structure of thin nanostructures. In these experiments, a specimen is placed on a substrate, and a series of X-ray diffraction patterns is collected at grazing incidence angles as the specimen is rotated. However, reconstructing the specimen's 3D structure from the data is challenging due to dynamical scattering effects induced by the experimental geometry and the lack of direct phase measurements. Specifically, the data involves nonuniformly sampled Fourier-transform values of the specimen density, and failure to effectively address this nonuniformity can lead to errors or degraded performance. Here we introduce a mathematical inversion framework that combines iterative-projection-based phasing techniques with new fast nonuniform Fourier inversion methods to efficiently reconstruct isolated 3D structures from their CSSI rotation-series data. We also analyze the theoretical properties of CSSI reconstruction to derive requirements on experimental parameters and characterize solution uniqueness. We validate our approach using CSSI data simulated from a conical Siemens star and a porous medium, demonstrating that high-resolution 3D structures can be reconstructed even in the presence of significant dynamical scattering, from data collected at as few as one or two incident angles. More broadly, the presented nonuniform reconstruction framework provides a foundation for solving challenging generalizations of the phase problem in which measurements involve nonlinear combinations of nonuniformly sampled Fourier values.

physics.comp-ph↗

ASCRIBE-XR: Virtual Reality for Visualization of Scientific Imagery

ASCRIBE-XR, a novel computational platform designed to facilitate the visualization and exploration of 3D volumetric data and mesh data in the context of synchrotron experiments, is described. Using Godot and PC-VR technologies, the platform enables users to dynamically load and manipulate 3D data sets to gain deeper insights into their research. The program's multi-user capabilities, enabled through WebRTC, and MQTT, allow multiple users to share data and visualize together in real-time, promoting a more interactive and engaging research experience. We describe the design and implementation of ASCRIBE-XR, highlighting its key features and capabilities. We will also discuss its utility in the context of synchrotron research, including examples of its application and potential benefits for the scientific community.

cs.HC↗

tomoCAM: Fast Model-based Iterative Reconstruction via GPU Acceleration and Non-Uniform Fast Fourier Transforms

X-Ray based computed tomography (CT) is a well-established technique for determining the three-dimensional structure of an object from its two-dimensional projections. In the past few decades, there have been significant advancements in the brightness and detector technology of tomography instruments at synchrotron sources. These advancements have led to the emergence of new observations and discoveries, with improved capabilities such as faster frame rates, larger fields of view, higher resolution, and higher dimensionality. These advancements have enabled the material science community to expand the scope of tomographic measurements towards increasingly in-situ and in-operando measurements. In these new experiments, samples can be rapidly evolving, have complex geometries, and restrictions on the field of view, limiting the number of projections that can be collected. In such cases, standard filtered back-projections (FBP) for the reconstructions often result in poor-quality reconstructions. Iterative reconstruction algorithms, such as model-based iterative reconstructions (MBIR), have demonstrated considerable success in producing high-quality reconstructions under such restrictions, but typically require high-performance computing resources with hundreds of compute nodes to solve the problem in a reasonable time.

physics.med-ph↗

Frame multiplication theory and a vector-valued DFT and ambiguity function

Vector-valued discrete Fourier transforms (DFTs) and ambiguity functions are defined. The motivation for the definitions is to provide realistic modeling of multi-sensor environments in which a useful time-frequency analysis is essential. The definition of the DFT requires associated uncertainty principle inequalities. The definition of the ambiguity function requires a component that leads to formulating a mathematical theory in which two essential algebraic operations can be made compatible in a natural way. The theory is referred to as frame multiplication theory. These definitions, inequalities, and theory are interdependent, and they are the content of the paper with the centerpiece being frame multiplication theory. The technology underlying frame multiplication theory is the theory of frames, short time Fourier transforms (STFTs), and the representation theory of finite groups. The main results have the following form: frame multiplication exists if and only if the finite frames that arise in the theory are of a certain type, e.g., harmonic frames, or, more generally, group frames. In light of the complexities and the importance of the modeling of time-varying and dynamical systems in the context of effectively analyzing vector-valued multi-sensor environments, the theory of vector-valued DFTs and ambiguity functions must not only be mathematically meaningful, but it must have constructive implementable algorithms, and be computationally viable. This paper presents our vision for resolving these issues, in terms of a significant mathematical theory, and based on the goal of formulating and developing a useful vector-valued theory.

math.FA↗