arXiv subjects

Jelena Bratulić

Publications and source records attributed to Jelena Bratulić.

5 recordsLinked to original sources

arXiv2026

Assessing Multimodal Chronic Wound Embeddings with Expert Triplet Agreement

Recessive dystrophic epidermolysis bullosa (RDEB) is a rare genetic skin disorder for which clinicians greatly benefit from finding similar cases using images and clinical text. However, off-the-shelf foundation models do not reliably capture clinically meaningful features for this heterogeneous, long-tail disease, and structured measurement of agreement with experts is challenging. To address these gaps, we propose evaluating embedding spaces with expert ordinal comparisons (triplet judgments), which are fast to collect and encode implicit clinical similarity knowledge. We further introduce TriDerm, a multimodal framework that learns interpretable wound representations from small cohorts by integrating wound imagery, boundary masks, and expert reports. On the vision side, TriDerm adapts visual foundation models to RDEB using wound-level attention pooling and non-contrastive representation learning. For text, we prompt large language models with comparison queries and recover medically meaningful representations via soft ordinal embeddings (SOE). We show that visual and textual modalities capture complementary aspects of wound phenotype, and that fusing both modalities yields 73.5% agreement with experts, outperforming the best off-the-shelf single-modality foundation model by over 5.6 percentage points. We make the expert annotation tool, model code and representative dataset samples publicly available.

cs.CV↗

arXiv2026

On Geometric Understanding and Learned Priors in Feed-forward 3D Reconstruction Models

Feed-forward 3D reconstruction models such as DUSt3R, VGGT, and Depth Anything 3 (DA3) are transformer-based foundation models that infer camera geometry and dense scene structure in a single forward pass. Trained at scale in a supervised fashion, they raise a central question: do these models build upon geometric principles akin to traditional multi-view pipelines, or do they primarily rely on learned priors arising from the large-scale training setup? We find that epipolar geometry emerges within the intermediate layers of all three models and is causally linked to correspondence patterns in attention heads. To study this, we perform a systematic analysis of their internal representations across three real-world datasets and a controlled synthetic dataset. We quantify geometric understanding by probing intermediate features, analyzing attention patterns to identify correspondence matching patterns, and performing targeted interventions at the attention level. Further, we assess the role of learned priors by applying challenging input-level perturbations, such as occlusions, scene ambiguities, and varying camera configurations, and compare them against classical multi-stage reconstruction pipelines.

cs.CV↗

arXiv2025

Unlocking In-Context Learning for Natural Datasets Beyond Language Modelling

Large Language Models (LLMs) exhibit In-Context Learning (ICL), which enables the model to perform new tasks conditioning only on the examples provided in the context without updating the model's weights. While ICL offers fast adaptation across natural language tasks and domains, its emergence is less straightforward for modalities beyond text. In this work, we systematically uncover properties present in LLMs that support the emergence of ICL for autoregressive models and various modalities by promoting the learning of the needed mechanisms for ICL. We identify exact token repetitions in the training data sequences as an important factor for ICL. Such repetitions further improve stability and reduce transiency in ICL performance. Moreover, we emphasise the significance of training task difficulty for the emergence of ICL. Finally, by applying our novel insights on ICL emergence, we unlock ICL capabilities for various visual datasets and a more challenging EEG classification task.

cs.CL↗

arXiv2025

Using Knowledge Graphs to harvest datasets for efficient CLIP model training

Training high-quality CLIP models typically requires enormous datasets, which limits the development of domain-specific models -- especially in areas that even the largest CLIP models do not cover well -- and drives up training costs. This poses challenges for scientific research that needs fine-grained control over the training procedure of CLIP models. In this work, we show that by employing smart web search strategies enhanced with knowledge graphs, a robust CLIP model can be trained from scratch with considerably less data. Specifically, we demonstrate that an expert foundation model for living organisms can be built using just 10M images. Moreover, we introduce EntityNet, a dataset comprising 33M images paired with 46M text descriptions, which enables the training of a generic CLIP model in significantly reduced time.

cs.CV↗

arXiv2024

Eureka-Moments in Transformers: Multi-Step Tasks Reveal Softmax Induced Optimization Problems

In this work, we study rapid improvements of the training loss in transformers when being confronted with multi-step decision tasks. We found that transformers struggle to learn the intermediate task and both training and validation loss saturate for hundreds of epochs. When transformers finally learn the intermediate task, they do this rapidly and unexpectedly. We call these abrupt improvements Eureka-moments, since the transformer appears to suddenly learn a previously incomprehensible concept. We designed synthetic tasks to study the problem in detail, but the leaps in performance can be observed also for language modeling and in-context learning (ICL). We suspect that these abrupt transitions are caused by the multi-step nature of these tasks. Indeed, we find connections and show that ways to improve on the synthetic multi-step tasks can be used to improve the training of language modeling and ICL. Using the synthetic data we trace the problem back to the Softmax function in the self-attention block of transformers and show ways to alleviate the problem. These fixes reduce the required number of training steps, lead to higher likelihood to learn the intermediate task, to higher final accuracy and training becomes more robust to hyper-parameters.

cs.LG↗