arXiv subjects

Jelena Stajic

Publications and source records attributed to Jelena Stajic.

13 recordsLinked to original sources

arXiv2008

Determinants of bistability in induction of the Escherichia coli lac operon

We have developed a mathematical model of regulation of expression of the Escherichia coli lac operon, and have investigated bistability in its steady-state induction behavior in the absence of external glucose. Numerical analysis of equations describing regulation by artificial inducers revealed two natural bistability parameters that can be used to control the range of inducer concentrations over which the model exhibits bistability. By tuning these bistability parameters, we found a family of biophysically reasonable systems that are consistent with an experimentally determined bistable region for induction by thio-methylgalactoside (Ozbudak et al. Nature 427:737, 2004). The model predicts that bistability can be abolished when passive transport or permease export becomes sufficiently large; the former case is especially relevant to induction by isopropyl-beta, D-thiogalactopyranoside. To model regulation by lactose, we developed similar equations in which allolactose, a metabolic intermediate in lactose metabolism and a natural inducer of lac, is the inducer. For biophysically reasonable parameter values, these equations yield no bistability in response to induction by lactose; however, systems with an unphysically small permease-dependent export effect can exhibit small amounts of bistability for limited ranges of parameter values. These results cast doubt on the relevance of bistability in the lac operon within the natural context of E. coli, and help shed light on the controversy among existing theoretical studies that address this issue. The results also suggest an experimental approach to address the relevance of bistability in the lac operon within the natural context of E. coli.

q-bio.CB↗

arXiv2006

Thermodynamics of Interacting Fermions in Atomic Traps

We calculate the entropy in a trapped, resonantly interacting Fermi gas as a function of temperature for a wide range of magnetic fields between the BCS and Bose-Einstein condensation endpoints. This provides a basis for the important technique of adiabatic sweep thermometry, and serves to characterize quantitatively the evolution and nature of the excitations of the gas. The results are then used to calibrate the temperature in several ground breaking experiments on $^6$Li and $^{40}$K.

cond-mat.supr-con↗

arXiv2005

Applying BCS-BEC Crossover Theory To High Temperature Superconductors and Ultracold Atomic Fermi Gases

This review is written at the time of the twentieth anniversary of the discovery of high temperature superconductors, which, nearly coincides with the important discovery of the superfluid phases of ultracold trapped fermionic atoms. We show how these two subjects have much in common. Both have been addressed from the perspective of the BCS-Bose Einstein condensation (BEC) crossover scenario, which is designed to treat short coherence length superfluids with transition temperatures which are "high", with respect to the Fermi energy. A generalized mean field treatment of BCS-BEC crossover at general temperatures $T$, based on the BCS-Leggett ground state, has met with remarkable success in the fermionic atomic systems. Here we summarize this success in the context of four different cold atom experiments, all of which provide indications, direct or indirect, for the existence of a pseudogap. This scenario also provides a physical picture of the pseudogap phase in the underdoped cuprates which is a central focus of high $T_c$ research. We summarize successful applications of BCS-BEC crossover to key experiments in high $T_c$ systems including the phase diagram, specific heat, and vortex core STM data, along with the Nernst effect, and exciting recent data on the superfluid density in very underdoped samples,

cond-mat.supr-con↗

arXiv2005

Hamiltonian walks on Sierpinski and n-simplex fractals

We study Hamiltonian walks (HWs) on Sierpinski and $n$--simplex fractals. Via numerical analysis of exact recursion relations for the number of HWs we calculate the connectivity constant $ω$ and find the asymptotic behaviour of the number of HWs. Depending on whether or not the polymer collapse transition is possible on a studied lattice, different scaling relations for the number of HWs are obtained. These relations are in general different from the well-known form characteristic of homogeneous lattices which has thus far been assumed to hold for fractal lattices too.

cond-mat.stat-mech↗

arXiv2005

BCS-BEC Crossover: From High Temperature Superconductors to Ultracold Superfluids

We review the BCS to Bose Einstein condensation (BEC) crossover scenario which is based on the well known crossover generalization of the BCS ground state wavefunction $Ψ_0$. While this ground state has been summarized extensively in the literature, this Review is devoted to less widely discussed issues: understanding the effects of finite temperature, primarily below $T_c$, in a manner consistent with $Ψ_0$. Our emphasis is on the intersection of two important problems: high $T_c$ superconductivity and superfluidity in ultracold fermionic atomic gases. We address the "pseudogap state" in the copper oxide superconductors from the vantage point of a BCS-BEC crossover scenario, although there is no consensus on the applicability of this scheme to high $T_c$. We argue that it also provides a useful basis for studying atomic gases near the unitary scattering regime; they are most likely in the counterpart pseudogap phase. That is, superconductivity takes place out of a non-Fermi liquid state where preformed, metastable fermion pairs are present at the onset of their Bose condensation. As a microscopic basis for this work, we summarize a variety of $T$-matrix approaches, and assess their theoretical consistency. A close connection with conventional superconducting fluctuation theories is emphasized and exploited.

cond-mat.supr-con↗

arXiv2005

Heat Capacity of a Strongly-Interacting Fermi Gas

We have measured the heat capacity of an optically-trapped, strongly-interacting Fermi gas of atoms. A precise input of energy to the gas is followed by single-parameter thermometry, which determines the empirical temperature parameter $\tilde{T}$ of the gas cloud. Our measurements reveal a clear transition in the heat capacity. The energy and the spatial profile of the gas are computed using a theory of the crossover from Fermi to Bose superfluids at finite temperature. The theory calibrates $\tilde{T}$, yields excellent agreement with the data, and predicts the onset of superfluidity at the observed transition point.

cond-mat.other↗

arXiv2004

Density Profiles of Strongly Interacting Trapped Fermi Gases

We study density profiles in trapped fermionic gases, near Feshbach resonances, at all $T \leq T_c$ and in the near-BEC and unitary regimes. For the latter, we quantify and characterize the generally neglected contribution from noncondensed Cooper pairs. As a consequence of these pairs, our profiles are rather well fit to a Thomas-Fermi (TF) functional form, and equally well fit to experimental data. Our work lends support to the notion that TF fits can be used in an experimental context to obtain information about the temperature.

cond-mat.stat-mech↗

arXiv2004

Particle Density Distributions in Fermi Gas Superfluids: Molecular Boson Effects

We show how to describe the $T \neq 0$ behavior associated with the usual BCS- Bose Einstein condensation (BEC) crossover ground state. We confine our attention here to the BEC and near-BEC regime where analytical calculations are possible. At finite $T$, non-condensed fermion pairs must be included, although they have been generally ignored in the literature. Within this BEC regime we compute the equations of state for the one and two channel models; these two cases correspond to whether Feshbach resonance effects are omitted or included. Differences between these two cases can be traced to differences between the nature of a Cooper pair and bosonic condensate. Our results are also compared with the Gross Pitaevskii equations of state for true bosons. Differences found here are associated with the underlying fermionic character of the system. Finally, the particle density distribution functions for a trap containing superfluid fermionic atoms are computed using a Thomas-Fermi approach. The one and two channel behavior is found to be very different; we find a narrowing of the density profile as a result of Feshbach resonance effects. Importantly, we infer that the ratio between bosonic and fermionic scattering lengths depends on the magnetic detuning and is generally smaller than 2. Future experiments will be required to determine to what extent this ratio varies with magnetic fields.

cond-mat.soft↗

arXiv2004

The Nature of Superfluidity in Ultracold Fermi Gases Near Feshbach Resonances

We study the superfluid state of atomic Fermi gases using a BCS-BEC crossover theory. Our approach emphasizes non-condensed fermion pairs which strongly hybridize with their (Feshbach-induced) molecular boson counterparts. These pairs lead to pseudogap effects above $T_c$ and non-BCS characteristics below. We discuss how these effects influence the experimental signatures of superfluidity.

cond-mat.soft↗

arXiv2003

The pseudogap state in superconductors: Extended Hartree approach to time-dependent Ginzburg-Landau Theory

It is well known that conventional pairing fluctuation theory at the Hartree level leads to a normal state pseudogap in the fermionic spectrum. Our goal is to extend this Hartree approximated scheme to arrive at a generalized mean field theory of pseudogapped superconductors for all temperatures $T$. While an equivalent approach to the pseudogap has been derived elsewhere using a more formal Green's function decoupling scheme, in this paper we re-interpret this mean field theory and BCS theory as well, and demonstrate how they naturally relate to ideal Bose gas condensation. Here we recast the Hartree approximated Ginzburg-Landau self consistent equations in a T-matrix form. This recasting makes it possible to consider arbitrarily strong attractive coupling, where bosonic degrees of freedom appear at $ T^*$ considerably above $T_c$. The implications for transport both above and below $T_c$ are discussed. Below $T_c$ we find two types of contributions. Those associated with fermionic excitations have the usual BCS functional form. That they depend on the magnitude of the excitation gap, nevertheless, leads to rather atypical transport properties in the strong coupling limit, where this gap (as distinct from the order parameter) is virtually $T$-independent. In addition, there are bosonic terms arising from non-condensed pairs whose transport properties are shown here to be reasonably well described by an effective time-dependent Ginzburg-Landau theory.

cond-mat.supr-con↗

arXiv2003

The Cuprate Pseudogap: Competing Order Parameters or Precursor Superconductivity

In this paper we compare two broad classes of theories for the pseudogap in cuprate superconductors. The comparison in made in reference to measurements of the superfluid density, $ρ_s(T,x)$, in $YBa_2CuO_{7- δ}$ films having a wide range of stoichiometries, $δ$, or, hole doping, $x$. The theoretical challenge raised by these (and previous) data is to understand why the T-dependence of $ρ_s(T,x)$ is insensitive to the fermionic excitation gap $Δ(T,x)$, which opens in the normal state and persists into the superconducting state, when presumably $ρ_s(T)$ is governed, at least in part, by fermionic excitations. Indeed, $ρ_s(T,x)$ seems to have a BCS-like dependence on $T_c(x)$, which, although not unexpected, is not straightforward to understand in pseudogapped superconductors where $T_c(x)$ and the excitation gap have little in common. Here, we contrast "extrinsic" and "intrinsic" theoretical approaches to the pseudogap and argue that the former (for example, associated with a competing order parameter) exhibits more obvious departures from BCS-like $T$ dependences in $ρ_s(T)$ than approaches which associate the pseudogap with the superconductivity itself. Examples of the latter are Fermi liquid based schemes as well as a pair fluctuation mean field theory. Thus far, the measured behavior of the superfluid density appears to argue against an extrinsic interpretation of the pseudogap, and supports instead its intrinsic origin.

cond-mat.supr-con↗

arXiv2002

The Pseudogap Challenge: Understanding the ab-Plane AC Conductivity below Tc

We establish that the cuprate pseudogap plays a crucial role in the $ab$-plane optical conductivity $σ(ω,T)$ for temperatures $T \le T_c$. The pseudogap signatures in $σ(ω,T)$ associated with competing proposals of a ``hidden order'' and ``superconducting'' origin for the $d_{x^2 - y^2}$ pseudogap are found to differ in their qualitative $ω,T$ dependences. For the latter case, as $T$ increases from 0, excess low $ω$ weight appears; moreover, a much wider range of $ω$ contributes to form the condensate. We discuss these theories in light of current experiments.

cond-mat.supr-con↗

arXiv2002

Pair-breaking effects in the Pseudogap Regime: Application to High Temperature Superconductors

Abrikosov-Gor'kov (AG) theory, the foundation for understanding pair-breaking effects in conventional superconductors, is inadequate when there is an excitation gap (pseudogap) present at the onset of superconductivity. In this paper we present an extension of AG theory within two important, and diametrically opposite approaches to the cuprate pseudogap. The effects of impurities on the pseudogap onset temperature T* and on Tc, along with comparisons to experiment are addressed.

cond-mat.supr-con↗