arXiv subjects

Jennifer Chayes

Publications and source records attributed to Jennifer Chayes.

At least 19 recordsLinked to original sources

arXiv2026

Auditing the Auditors: Does Community-based Moderation Get It Right?

Online social platforms increasingly rely on crowd-sourced systems to label misleading content at scale, but these systems must both aggregate users' evaluations and decide whose evaluations to trust. To address the latter, many platforms audit users by rewarding agreement with the final aggregate outcome, a design we term consensus-based auditing. We analyze the consequences of this design in X's Community Notes, which in September 2022 adopted consensus-based auditing that ties users' eligibility for participation to agreement with the eventual platform outcome. We find evidence of strategic conformity: minority contributors' evaluations drift toward the majority and their participation share falls on controversial topics, where independent signals matter most. We formalize this mechanism in a behavioral model in which contributors trade off private beliefs against anticipated penalties for disagreement. Motivated by these findings, we propose a two-stage auditing and aggregation algorithm that weights contributors by the stability of their past residuals rather than by agreement with the majority. The method first accounts for differences across content and contributors, and then measures how predictable each contributor's evaluations are relative to the latent-factor model. Contributors whose evaluations are consistently informative receive greater influence in aggregation, even when they disagree with the prevailing consensus. In the Community Notes data, this approach improves out-of-sample predictive performance while avoiding penalization of disagreement.

cs.SI↗

arXiv2025

Advancing Science- and Evidence-based AI Policy

AI policy should advance AI innovation by ensuring that its potential benefits are responsibly realized and widely shared. To achieve this, AI policymaking should place a premium on evidence: Scientific understanding and systematic analysis should inform policy, and policy should accelerate evidence generation. But policy outcomes reflect institutional constraints, political dynamics, electoral pressures, stakeholder interests, media environment, economic considerations, cultural contexts, and leadership perspectives. Adding to this complexity is the reality that the broad reach of AI may mean that evidence and policy are misaligned: Although some evidence and policy squarely address AI, much more partially intersects with AI. Well-designed policy should integrate evidence that reflects scientific understanding rather than hype. An increasing number of efforts address this problem by often either (i) contributing research into the risks of AI and their effective mitigation or (ii) advocating for policy to address these risks. This paper tackles the hard problem of how to optimize the relationship between evidence and policy to address the opportunities and challenges of increasingly powerful AI.

cs.CY↗

arXiv2024

Manifold-Constrained Nucleus-Level Denoising Diffusion Model for Structure-Based Drug Design

Artificial intelligence models have shown great potential in structure-based drug design, generating ligands with high binding affinities. However, existing models have often overlooked a crucial physical constraint: atoms must maintain a minimum pairwise distance to avoid separation violation, a phenomenon governed by the balance of attractive and repulsive forces. To mitigate such separation violations, we propose NucleusDiff. It models the interactions between atomic nuclei and their surrounding electron clouds by enforcing the distance constraint between the nuclei and manifolds. We quantitatively evaluate NucleusDiff using the CrossDocked2020 dataset and a COVID-19 therapeutic target, demonstrating that NucleusDiff reduces violation rate by up to 100.00% and enhances binding affinity by up to 22.16%, surpassing state-of-the-art models for structure-based drug design. We also provide qualitative analysis through manifold sampling, visually confirming the effectiveness of NucleusDiff in reducing separation violations and improving binding affinities.

q-bio.QM↗

arXiv2024

A Multi-Grained Symmetric Differential Equation Model for Learning Protein-Ligand Binding Dynamics

In drug discovery, molecular dynamics (MD) simulation for protein-ligand binding provides a powerful tool for predicting binding affinities, estimating transport properties, and exploring pocket sites. There has been a long history of improving the efficiency of MD simulations through better numerical methods and, more recently, by utilizing machine learning (ML) methods. Yet, challenges remain, such as accurate modeling of extended-timescale simulations. To address this issue, we propose NeuralMD, the first ML surrogate that can facilitate numerical MD and provide accurate simulations in protein-ligand binding dynamics. We propose a principled approach that incorporates a novel physics-informed multi-grained group symmetric framework. Specifically, we propose (1) the BindingNet model that satisfies group symmetry using vector frames and captures the multi-level protein-ligand interactions, and (2) an augmented neural differential equation solver that learns the trajectory under Newtonian mechanics. For the experiment, we design ten single-trajectory and three multi-trajectory binding simulation tasks. We demonstrate the efficiency and effectiveness of NeuralMD, achieving over 1K$\times$ speedup compared to standard numerical MD simulations. NeuralMD also outperforms all other ML approaches, achieving up to 15$\times$ reduction in reconstruction error and 70% increase in validity. Additionally, we qualitatively illustrate that the oscillations in the predicted trajectories align more closely with ground-truth dynamics than those of other machine-learning methods. We believe NeuralMD paves the foundation for a new research paradigm in simulating protein-ligand dynamics.

cs.LG↗

arXiv2023

Symmetry-Informed Geometric Representation for Molecules, Proteins, and Crystalline Materials

Artificial intelligence for scientific discovery has recently generated significant interest within the machine learning and scientific communities, particularly in the domains of chemistry, biology, and material discovery. For these scientific problems, molecules serve as the fundamental building blocks, and machine learning has emerged as a highly effective and powerful tool for modeling their geometric structures. Nevertheless, due to the rapidly evolving process of the field and the knowledge gap between science (e.g., physics, chemistry, & biology) and machine learning communities, a benchmarking study on geometrical representation for such data has not been conducted. To address such an issue, in this paper, we first provide a unified view of the current symmetry-informed geometric methods, classifying them into three main categories: invariance, equivariance with spherical frame basis, and equivariance with vector frame basis. Then we propose a platform, coined Geom3D, which enables benchmarking the effectiveness of geometric strategies. Geom3D contains 16 advanced symmetry-informed geometric representation models and 14 geometric pretraining methods over 46 diverse datasets, including small molecules, proteins, and crystalline materials. We hope that Geom3D can, on the one hand, eliminate barriers for machine learning researchers interested in exploring scientific problems; and, on the other hand, provide valuable guidance for researchers in computational chemistry, structural biology, and materials science, aiding in the informed selection of representation techniques for specific applications.

cs.LG↗

arXiv2023

Disincentivizing Polarization in Social Networks

On social networks, algorithmic personalization drives users into filter bubbles where they rarely see content that deviates from their interests. We present a model for content curation and personalization that avoids filter bubbles, along with algorithmic guarantees and nearly matching lower bounds. In our model, the platform interacts with $n$ users over $T$ timesteps, choosing content for each user from $k$ categories. The platform receives stochastic rewards as in a multi-arm bandit. To avoid filter bubbles, we draw on the intuition that if some users are shown some category of content, then all users should see at least a small amount of that content. We first analyze a naive formalization of this intuition and show it has unintended consequences: it leads to ``tyranny of the majority'' with the burden of diversification borne disproportionately by those with minority interests. This leads us to our model which distributes this burden more equitably. We require that the probability any user is shown a particular type of content is at least $\gamma$ times the average probability all users are shown that type of content. Full personalization corresponds to $\gamma = 0$ and complete homogenization corresponds to $\gamma = 1$; hence, $\gamma$ encodes a hard cap on the level of personalization. We also analyze additional formulations where the platform can exceed its cap but pays a penalty proportional to its constraint violation. We provide algorithmic guarantees for optimizing recommendations subject to these constraints. These include nearly matching upper and lower bounds for the entire range of $\gamma \in [0,1]$ showing that the reward of a multi-agent variant of UCB is nearly optimal. Using real-world preference data, we empirically verify that under our model, users share the burden of diversification with only minor utility loss under our constraints.

cs.CY↗

arXiv2022

Efficient sampling and counting algorithms for the Potts model on $\mathbb Z^d$ at all temperatures

For $d \ge 2$ and all $q\geq q_{0}(d)$ we give an efficient algorithm to approximately sample from the $q$-state ferromagnetic Potts and random cluster models on finite tori $(\mathbb Z / n \mathbb Z )^d$ for any inverse temperature $β\geq 0$. This shows that the physical phase transition of the Potts model presents no algorithmic barrier to efficient sampling, and stands in contrast to Markov chain mixing time results: the Glauber dynamics mix slowly at and below the critical temperature, and the Swendsen--Wang dynamics mix slowly at the critical temperature. We also provide an efficient algorithm (an FPRAS) for approximating the partition functions of these models at all temperatures. Our algorithms are based on representing the random cluster model as a contour model using Pirogov--Sinai theory, and then computing an accurate approximation of the logarithm of the partition function by inductively truncating the resulting cluster expansion. The main innovation of our approach is an algorithmic treatment of unstable ground states, which is essential for our algorithms to apply to all inverse temperatures $β$. By treating unstable ground states our work gives a general template for converting probabilistic applications of Pirogov-Sinai theory to efficient algorithms.

math.PR↗

arXiv2020

A large deviation principle for block models

We initiate a study of large deviations for block model random graphs in the dense regime. Following Chatterjee-Varadhan(2011), we establish an LDP for dense block models, viewed as random graphons. As an application of our result, we study upper tail large deviations for homomorphism densities of regular graphs. We identify the existence of a "symmetric" phase, where the graph, conditioned on the rare event, looks like a block model with the same block sizes as the generating graphon. In specific examples, we also identify the existence of a "symmetry breaking" regime, where the conditional structure is not a block model with compatible dimensions. This identifies a "reentrant phase transition" phenomenon for this problem -- analogous to one established for Erdos-Renyi random graphs (Chatterjee-Dey(2010), Chatterjee-Varadhan(2011)). Finally, extending the analysis of Lubetzky-Zhao(2015), we identify the precise boundary between the symmetry and symmetry breaking regime for homomorphism densities of regular graphs and the operator norm on Erdos-Renyi bipartite graphs.

math.PR↗

arXiv2019

MLSys: The New Frontier of Machine Learning Systems

Machine learning (ML) techniques are enjoying rapidly increasing adoption. However, designing and implementing the systems that support ML models in real-world deployments remains a significant obstacle, in large part due to the radically different development and deployment profile of modern ML methods, and the range of practical concerns that come with broader adoption. We propose to foster a new systems machine learning research community at the intersection of the traditional systems and ML communities, focused on topics such as hardware systems for ML, software systems for ML, and ML optimized for metrics beyond predictive accuracy. To do this, we describe a new conference, MLSys, that explicitly targets research at the intersection of systems and machine learning with a program committee split evenly between experts in systems and ML, and an explicit focus on topics at the intersection of the two.

cs.LG↗

arXiv2019

Tackling Climate Change with Machine Learning

Climate change is one of the greatest challenges facing humanity, and we, as machine learning experts, may wonder how we can help. Here we describe how machine learning can be a powerful tool in reducing greenhouse gas emissions and helping society adapt to a changing climate. From smart grids to disaster management, we identify high impact problems where existing gaps can be filled by machine learning, in collaboration with other fields. Our recommendations encompass exciting research questions as well as promising business opportunities. We call on the machine learning community to join the global effort against climate change.

cs.CY↗

arXiv2019

The Disparate Equilibria of Algorithmic Decision Making when Individuals Invest Rationally

The long-term impact of algorithmic decision making is shaped by the dynamics between the deployed decision rule and individuals' response. Focusing on settings where each individual desires a positive classification---including many important applications such as hiring and school admissions, we study a dynamic learning setting where individuals invest in a positive outcome based on their group's expected gain and the decision rule is updated to maximize institutional benefit. By characterizing the equilibria of these dynamics, we show that natural challenges to desirable long-term outcomes arise due to heterogeneity across groups and the lack of realizability. We consider two interventions, decoupling the decision rule by group and subsidizing the cost of investment. We show that decoupling achieves optimal outcomes in the realizable case but has discrepant effects that may depend on the initial conditions otherwise. In contrast, subsidizing the cost of investment is shown to create better equilibria for the disadvantaged group even in the absence of realizability.

cs.GT↗

arXiv2019

Visualizing the Consequences of Climate Change Using Cycle-Consistent Adversarial Networks

We present a project that aims to generate images that depict accurate, vivid, and personalized outcomes of climate change using Cycle-Consistent Adversarial Networks (CycleGANs). By training our CycleGAN model on street-view images of houses before and after extreme weather events (e.g. floods, forest fires, etc.), we learn a mapping that can then be applied to images of locations that have not yet experienced these events. This visual transformation is paired with climate model predictions to assess likelihood and type of climate-related events in the long term (50 years) in order to bring the future closer in the viewers mind. The eventual goal of our project is to enable individuals to make more informed choices about their climate future by creating a more visceral understanding of the effects of climate change, while maintaining scientific credibility by drawing on climate model projections.

cs.CV↗

arXiv2019

What's in a Name? Reducing Bias in Bios without Access to Protected Attributes

There is a growing body of work that proposes methods for mitigating bias in machine learning systems. These methods typically rely on access to protected attributes such as race, gender, or age. However, this raises two significant challenges: (1) protected attributes may not be available or it may not be legal to use them, and (2) it is often desirable to simultaneously consider multiple protected attributes, as well as their intersections. In the context of mitigating bias in occupation classification, we propose a method for discouraging correlation between the predicted probability of an individual's true occupation and a word embedding of their name. This method leverages the societal biases that are encoded in word embeddings, eliminating the need for access to protected attributes. Crucially, it only requires access to individuals' names at training time and not at deployment time. We evaluate two variations of our proposed method using a large-scale dataset of online biographies. We find that both variations simultaneously reduce race and gender biases, with almost no reduction in the classifier's overall true positive rate.

cs.LG↗

arXiv2019

Bias in Bios: A Case Study of Semantic Representation Bias in a High-Stakes Setting

We present a large-scale study of gender bias in occupation classification, a task where the use of machine learning may lead to negative outcomes on peoples' lives. We analyze the potential allocation harms that can result from semantic representation bias. To do so, we study the impact on occupation classification of including explicit gender indicators---such as first names and pronouns---in different semantic representations of online biographies. Additionally, we quantify the bias that remains when these indicators are "scrubbed," and describe proxy behavior that occurs in the absence of explicit gender indicators. As we demonstrate, differences in true positive rates between genders are correlated with existing gender imbalances in occupations, which may compound these imbalances.

cs.IR↗

arXiv2018

Private Algorithms Can Always Be Extended

We consider the following fundamental question on $ε$-differential privacy. Consider an arbitrary $ε$-differentially private algorithm defined on a subset of the input space. Is it possible to extend it to an $ε'$-differentially private algorithm on the whole input space for some $ε'$ comparable with $ε$? In this note we answer affirmatively this question for $ε'=2ε$. Our result applies to every input metric space and space of possible outputs. This result originally appeared in a recent paper by the authors [BCSZ18]. We present a self-contained version in this note, in the hopes that it will be broadly useful.

math.ST↗

arXiv2018

Revealing Network Structure, Confidentially: Improved Rates for Node-Private Graphon Estimation

Motivated by growing concerns over ensuring privacy on social networks, we develop new algorithms and impossibility results for fitting complex statistical models to network data subject to rigorous privacy guarantees. We consider the so-called node-differentially private algorithms, which compute information about a graph or network while provably revealing almost no information about the presence or absence of a particular node in the graph. We provide new algorithms for node-differentially private estimation for a popular and expressive family of network models: stochastic block models and their generalization, graphons. Our algorithms improve on prior work, reducing their error quadratically and matching, in many regimes, the optimal nonprivate algorithm. We also show that for the simplest random graph models ($G(n,p)$ and $G(n,m)$), node-private algorithms can be qualitatively more accurate than for more complex models---converging at a rate of $\frac{1}{ε^2 n^{3}}$ instead of $\frac{1}{ε^2 n^2}$. This result uses a new extension lemma for differentially private algorithms that we hope will be broadly useful.

math.ST↗

arXiv2017

Iterative Collaborative Filtering for Sparse Matrix Estimation

We consider sparse matrix estimation where the goal is to estimate an $n\times n$ matrix from noisy observations of a small subset of its entries. We analyze the estimation error of the popularly utilized collaborative filtering algorithm for the sparse regime. Specifically, we propose a novel iterative variant of the algorithm, adapted to handle the setting of sparse observations. We establish that as long as the fraction of entries observed at random scale as $\frac{\log^{1+\kappa}(n)}{n}$ for any fixed $\kappa > 0$, the estimation error with respect to the $\max$-norm decays to $0$ as $n\to\infty$ assuming the underlying matrix of interest has constant rank $r$. Our result is robust to model mis-specification in that if the underlying matrix is approximately rank $r$, then the estimation error decays to the approximate error with respect to the $\max$-norm. In the process, we establish algorithm's ability to handle arbitrary bounded noise in the observations.

math.ST↗

arXiv2017

Entropy-SGD: Biasing Gradient Descent Into Wide Valleys

This paper proposes a new optimization algorithm called Entropy-SGD for training deep neural networks that is motivated by the local geometry of the energy landscape. Local extrema with low generalization error have a large proportion of almost-zero eigenvalues in the Hessian with very few positive or negative eigenvalues. We leverage upon this observation to construct a local-entropy-based objective function that favors well-generalizable solutions lying in large flat regions of the energy landscape, while avoiding poorly-generalizable solutions located in the sharp valleys. Conceptually, our algorithm resembles two nested loops of SGD where we use Langevin dynamics in the inner loop to compute the gradient of the local entropy before each update of the weights. We show that the new objective has a smoother energy landscape and show improved generalization over SGD using uniform stability, under certain assumptions. Our experiments on convolutional and recurrent networks demonstrate that Entropy-SGD compares favorably to state-of-the-art techniques in terms of generalization error and training time.

cs.LG↗