arXiv subjects

Jennifer D'Souza

Publications and source records attributed to Jennifer D'Souza.

At least 37 records · Page 2Linked to original sources

arXiv2025

YESciEval: Robust LLM-as-a-Judge for Scientific Question Answering

Large Language Models (LLMs) drive scientific question-answering on modern search engines, yet their evaluation robustness remains underexplored. We introduce YESciEval, an open-source framework that combines fine-grained rubric-based assessment with reinforcement learning to mitigate optimism bias in LLM evaluators. We release multidisciplinary scienceQ&A datasets, including adversarial variants, with evaluation scores from multiple LLMs. Independent of proprietary models and human feedback, our approach enables scalable, cost-free evaluation. By advancing reliable LLM-as-a-judge models, this work supports AI alignment and fosters robust, transparent evaluation essential for scientific inquiry.

cs.CL↗

arXiv2025

SemEval-2025 Task 5: LLMs4Subjects -- LLM-based Automated Subject Tagging for a National Technical Library's Open-Access Catalog

We present SemEval-2025 Task 5: LLMs4Subjects, a shared task on automated subject tagging for scientific and technical records in English and German using the GND taxonomy. Participants developed LLM-based systems to recommend top-k subjects, evaluated through quantitative metrics (precision, recall, F1-score) and qualitative assessments by subject specialists. Results highlight the effectiveness of LLM ensembles, synthetic data generation, and multilingual processing, offering insights into applying LLMs for digital library classification.

cs.CL↗

arXiv2025

LLMs4SchemaDiscovery: A Human-in-the-Loop Workflow for Scientific Schema Mining with Large Language Models

Extracting structured information from unstructured text is crucial for modeling real-world processes, but traditional schema mining relies on semi-structured data, limiting scalability. This paper introduces schema-miner, a novel tool that combines large language models with human feedback to automate and refine schema extraction. Through an iterative workflow, it organizes properties from text, incorporates expert input, and integrates domain-specific ontologies for semantic depth. Applied to materials science--specifically atomic layer deposition--schema-miner demonstrates that expert-guided LLMs generate semantically rich schemas suitable for diverse real-world applications.

cs.CL↗

arXiv2025

OntoAligner: A Comprehensive Modular and Robust Python Toolkit for Ontology Alignment

Ontology Alignment (OA) is fundamental for achieving semantic interoperability across diverse knowledge systems. We present OntoAligner, a comprehensive, modular, and robust Python toolkit for ontology alignment, designed to address current limitations with existing tools faced by practitioners. Existing tools are limited in scalability, modularity, and ease of integration with recent AI advances. OntoAligner provides a flexible architecture integrating existing lightweight OA techniques such as fuzzy matching but goes beyond by supporting contemporary methods with retrieval-augmented generation and large language models for OA. The framework prioritizes extensibility, enabling researchers to integrate custom alignment algorithms and datasets. This paper details the design principles, architecture, and implementation of the OntoAligner, demonstrating its utility through benchmarks on standard OA tasks. Our evaluation highlights OntoAligner's ability to handle large-scale ontologies efficiently with few lines of code while delivering high alignment quality. By making OntoAligner open-source, we aim to provide a resource that fosters innovation and collaboration within the OA community, empowering researchers and practitioners with a toolkit for reproducible OA research and real-world applications.

cs.AI↗

arXiv2025

Bridging the Evaluation Gap: Leveraging Large Language Models for Topic Model Evaluation

This study presents a framework for automated evaluation of dynamically evolving topic taxonomies in scientific literature using Large Language Models (LLMs). In digital library systems, topic modeling plays a crucial role in efficiently organizing and retrieving scholarly content, guiding researchers through complex knowledge landscapes. As research domains proliferate and shift, traditional human centric and static evaluation methods struggle to maintain relevance. The proposed approach harnesses LLMs to measure key quality dimensions, such as coherence, repetitiveness, diversity, and topic-document alignment, without heavy reliance on expert annotators or narrow statistical metrics. Tailored prompts guide LLM assessments, ensuring consistent and interpretable evaluations across various datasets and modeling techniques. Experiments on benchmark corpora demonstrate the method's robustness, scalability, and adaptability, underscoring its value as a more holistic and dynamic alternative to conventional evaluation strategies.

cs.CL↗

arXiv2025

Mining for Species, Locations, Habitats, and Ecosystems from Scientific Papers in Invasion Biology: A Large-Scale Exploratory Study with Large Language Models

This paper presents an exploratory study that harnesses the capabilities of large language models (LLMs) to mine key ecological entities from invasion biology literature. Specifically, we focus on extracting species names, their locations, associated habitats, and ecosystems, information that is critical for understanding species spread, predicting future invasions, and informing conservation efforts. Traditional text mining approaches often struggle with the complexity of ecological terminology and the subtle linguistic patterns found in these texts. By applying general-purpose LLMs without domain-specific fine-tuning, we uncover both the promise and limitations of using these models for ecological entity extraction. In doing so, this study lays the groundwork for more advanced, automated knowledge extraction tools that can aid researchers and practitioners in understanding and managing biological invasions.

cs.CL↗

arXiv2024

From Keywords to Structured Summaries: Streamlining Scholarly Information Access

This paper highlights the growing importance of information retrieval (IR) engines in the scientific community, addressing the inefficiency of traditional keyword-based search engines due to the rising volume of publications. The proposed solution involves structured records, underpinning advanced information technology (IT) tools, including visualization dashboards, to revolutionize how researchers access and filter articles, replacing the traditional text-heavy approach. This vision is exemplified through a proof of concept centered on the "reproductive number estimate of infectious diseases" research theme, using a fine-tuned large language model (LLM) to automate the creation of structured records to populate a backend database that now goes beyond keywords. The result is a next-generation information access system as an IR method accessible at https://orkg.org/usecases/r0-estimates.

cs.IR↗

arXiv2024

LLMs4Synthesis: Leveraging Large Language Models for Scientific Synthesis

In response to the growing complexity and volume of scientific literature, this paper introduces the LLMs4Synthesis framework, designed to enhance the capabilities of Large Language Models (LLMs) in generating high-quality scientific syntheses. This framework addresses the need for rapid, coherent, and contextually rich integration of scientific insights, leveraging both open-source and proprietary LLMs. It also examines the effectiveness of LLMs in evaluating the integrity and reliability of these syntheses, alleviating inadequacies in current quantitative metrics. Our study contributes to this field by developing a novel methodology for processing scientific papers, defining new synthesis types, and establishing nine detailed quality criteria for evaluating syntheses. The integration of LLMs with reinforcement learning and AI feedback is proposed to optimize synthesis quality, ensuring alignment with established criteria. The LLMs4Synthesis framework and its components are made available, promising to enhance both the generation and evaluation processes in scientific research synthesis.

cs.CL↗

arXiv2024

LLMs4OL 2024 Overview: The 1st Large Language Models for Ontology Learning Challenge

This paper outlines the LLMs4OL 2024, the first edition of the Large Language Models for Ontology Learning Challenge. LLMs4OL is a community development initiative collocated with the 23rd International Semantic Web Conference (ISWC) to explore the potential of Large Language Models (LLMs) in Ontology Learning (OL), a vital process for enhancing the web with structured knowledge to improve interoperability. By leveraging LLMs, the challenge aims to advance understanding and innovation in OL, aligning with the goals of the Semantic Web to create a more intelligent and user-friendly web. In this paper, we give an overview of the 2024 edition of the LLMs4OL challenge and summarize the contributions.

cs.CL↗

arXiv2024

Fine-tuning and Prompt Engineering with Cognitive Knowledge Graphs for Scholarly Knowledge Organization

The increasing amount of published scholarly articles, exceeding 2.5 million yearly, raises the challenge for researchers in following scientific progress. Integrating the contributions from scholarly articles into a novel type of cognitive knowledge graph (CKG) will be a crucial element for accessing and organizing scholarly knowledge, surpassing the insights provided by titles and abstracts. This research focuses on effectively conveying structured scholarly knowledge by utilizing large language models (LLMs) to categorize scholarly articles and describe their contributions in a structured and comparable manner. While previous studies explored language models within specific research domains, the extensive domain-independent knowledge captured by LLMs offers a substantial opportunity for generating structured contribution descriptions as CKGs. Additionally, LLMs offer customizable pathways through prompt engineering or fine-tuning, thus facilitating to leveraging of smaller LLMs known for their efficiency, cost-effectiveness, and environmental considerations. Our methodology involves harnessing LLM knowledge, and complementing it with domain expert-verified scholarly data sourced from a CKG. This strategic fusion significantly enhances LLM performance, especially in tasks like scholarly article categorization and predicate recommendation. Our method involves fine-tuning LLMs with CKG knowledge and additionally injecting knowledge from a CKG with a novel prompting technique significantly increasing the accuracy of scholarly knowledge extraction. We integrated our approach in the Open Research Knowledge Graph (ORKG), thus enabling precise access to organized scholarly knowledge, crucially benefiting domain-independent scholarly knowledge exchange and dissemination among policymakers, industrial practitioners, and the general public.

cs.DL↗

arXiv2024

Instruction Finetuning for Leaderboard Generation from Empirical AI Research

This study demonstrates the application of instruction finetuning of pretrained Large Language Models (LLMs) to automate the generation of AI research leaderboards, extracting (Task, Dataset, Metric, Score) quadruples from articles. It aims to streamline the dissemination of advancements in AI research by transitioning from traditional, manual community curation, or otherwise taxonomy-constrained natural language inference (NLI) models, to an automated, generative LLM-based approach. Utilizing the FLAN-T5 model, this research enhances LLMs' adaptability and reliability in information extraction, offering a novel method for structured knowledge representation.

cs.CL↗

arXiv2024

Exploring the Latest LLMs for Leaderboard Extraction

The rapid advancements in Large Language Models (LLMs) have opened new avenues for automating complex tasks in AI research. This paper investigates the efficacy of different LLMs-Mistral 7B, Llama-2, GPT-4-Turbo and GPT-4.o in extracting leaderboard information from empirical AI research articles. We explore three types of contextual inputs to the models: DocTAET (Document Title, Abstract, Experimental Setup, and Tabular Information), DocREC (Results, Experiments, and Conclusions), and DocFULL (entire document). Our comprehensive study evaluates the performance of these models in generating (Task, Dataset, Metric, Score) quadruples from research papers. The findings reveal significant insights into the strengths and limitations of each model and context type, providing valuable guidance for future AI research automation efforts.

cs.CL↗

arXiv2024

Large Language Models as Evaluators for Scientific Synthesis

Our study explores how well the state-of-the-art Large Language Models (LLMs), like GPT-4 and Mistral, can assess the quality of scientific summaries or, more fittingly, scientific syntheses, comparing their evaluations to those of human annotators. We used a dataset of 100 research questions and their syntheses made by GPT-4 from abstracts of five related papers, checked against human quality ratings. The study evaluates both the closed-source GPT-4 and the open-source Mistral model's ability to rate these summaries and provide reasons for their judgments. Preliminary results show that LLMs can offer logical explanations that somewhat match the quality ratings, yet a deeper statistical analysis shows a weak correlation between LLM and human ratings, suggesting the potential and current limitations of LLMs in scientific synthesis evaluation.

cs.CL↗

arXiv2024

Scholarly Question Answering using Large Language Models in the NFDI4DataScience Gateway

This paper introduces a scholarly Question Answering (QA) system on top of the NFDI4DataScience Gateway, employing a Retrieval Augmented Generation-based (RAG) approach. The NFDI4DS Gateway, as a foundational framework, offers a unified and intuitive interface for querying various scientific databases using federated search. The RAG-based scholarly QA, powered by a Large Language Model (LLM), facilitates dynamic interaction with search results, enhancing filtering capabilities and fostering a conversational engagement with the Gateway search. The effectiveness of both the Gateway and the scholarly QA system is demonstrated through experimental analysis.

cs.CL↗

arXiv2024

Effective Context Selection in LLM-based Leaderboard Generation: An Empirical Study

This paper explores the impact of context selection on the efficiency of Large Language Models (LLMs) in generating Artificial Intelligence (AI) research leaderboards, a task defined as the extraction of (Task, Dataset, Metric, Score) quadruples from scholarly articles. By framing this challenge as a text generation objective and employing instruction finetuning with the FLAN-T5 collection, we introduce a novel method that surpasses traditional Natural Language Inference (NLI) approaches in adapting to new developments without a predefined taxonomy. Through experimentation with three distinct context types of varying selectivity and length, our study demonstrates the importance of effective context selection in enhancing LLM accuracy and reducing hallucinations, providing a new pathway for the reliable and efficient generation of AI leaderboards. This contribution not only advances the state of the art in leaderboard generation but also sheds light on strategies to mitigate common challenges in LLM-based information extraction.

cs.CL↗

arXiv2024

A FAIR and Free Prompt-based Research Assistant

This demo will present the Research Assistant (RA) tool developed to assist with six main types of research tasks defined as standardized instruction templates, instantiated with user input, applied finally as prompts to well-known--for their sophisticated natural language processing abilities--AI tools, such as ChatGPT (https://chat.openai.com/) and Gemini (https://gemini.google.com/app). The six research tasks addressed by RA are: creating FAIR research comparisons, ideating research topics, drafting grant applications, writing scientific blogs, aiding preliminary peer reviews, and formulating enhanced literature search queries. RA's reliance on generative AI tools like ChatGPT or Gemini means the same research task assistance can be offered in any scientific discipline. We demonstrate its versatility by sharing RA outputs in Computer Science, Virology, and Climate Science, where the output with the RA tool assistance mirrored that from a domain expert who performed the same research task.

cs.CL↗

arXiv2024

Astro-NER -- Astronomy Named Entity Recognition: Is GPT a Good Domain Expert Annotator?

In this study, we address one of the challenges of developing NER models for scholarly domains, namely the scarcity of suitable labeled data. We experiment with an approach using predictions from a fine-tuned LLM model to aid non-domain experts in annotating scientific entities within astronomy literature, with the goal of uncovering whether such a collaborative process can approximate domain expertise. Our results reveal moderate agreement between a domain expert and the LLM-assisted non-experts, as well as fair agreement between the domain expert and the LLM model's predictions. In an additional experiment, we compare the performance of finetuned and default LLMs on this task. We have also introduced a specialized scientific entity annotation scheme for astronomy, validated by a domain expert. Our approach adopts a scholarly research contribution-centric perspective, focusing exclusively on scientific entities relevant to the research theme. The resultant dataset, containing 5,000 annotated astronomy article titles, is made publicly available.

cs.CL↗

arXiv2024

Evaluating Large Language Models for Structured Science Summarization in the Open Research Knowledge Graph

Structured science summaries or research contributions using properties or dimensions beyond traditional keywords enhances science findability. Current methods, such as those used by the Open Research Knowledge Graph (ORKG), involve manually curating properties to describe research papers' contributions in a structured manner, but this is labor-intensive and inconsistent between the domain expert human curators. We propose using Large Language Models (LLMs) to automatically suggest these properties. However, it's essential to assess the readiness of LLMs like GPT-3.5, Llama 2, and Mistral for this task before application. Our study performs a comprehensive comparative analysis between ORKG's manually curated properties and those generated by the aforementioned state-of-the-art LLMs. We evaluate LLM performance through four unique perspectives: semantic alignment and deviation with ORKG properties, fine-grained properties mapping accuracy, SciNCL embeddings-based cosine similarity, and expert surveys comparing manual annotations with LLM outputs. These evaluations occur within a multidisciplinary science setting. Overall, LLMs show potential as recommendation systems for structuring science, but further finetuning is recommended to improve their alignment with scientific tasks and mimicry of human expertise.

cs.AI↗