arXiv subjects

Jennifer L. Ross

Publications and source records attributed to Jennifer L. Ross.

22 records · Page 2Linked to original sources

arXiv2017

Contractility in an Extensile System

Essentially all biology is active and dynamic. Biological entities autonomously sense, com- pute, and respond using energy-coupled ratchets that can produce force and do work. The cytoskeleton, along with its associated proteins and motors, is a canonical example of biological active matter, which is responsible for cargo transport, cell motility, division, and morphol- ogy. Prior work on cytoskeletal active matter systems showed either extensile or contractile dynamics. Here, we demonstrate a cytoskeletal system that can control the direction of the network dynamics to be either extensile, contractile, or static depending on the concentration of filaments or transient crosslinkers through systematic variation of the crosslinker or micro- tubule concentrations. Based off these new observations and our previously published results, we created a simple one-dimensional model of the interaction of filaments within a bundle. Despite its simplicity, our model recapitulates the observed activities of our experimental sys- tem, implying that the dynamics of our finite networks of bundles are driven by the local filament-filament interactions within the bundle. Finally, we show that contractile phases can result in autonomously motile networks that resemble cells. Our experiments and model allow us to gain a deeper understanding of cytoskeletal dynamics and provide a stepping stone for designing active, autonomous systems that could potentially dynamically switch states.

cond-mat.soft↗

arXiv2016

Microscope Project for Undergraduate Laboratories

Optics is an important subfield of physics required for instrument design and used in a variety of other disciplines, including materials science, physics, and life sciences such as developmental biology and cell biology. It is important to educate students from a variety of disciplines and backgrounds in the basics of optics in order to train the next generation of interdisciplinary researchers and instrumentalists who will push the boundaries of discovery. In this paper, we present an experimental system developed to teach students in the basics of geometric optics, including ray and wave optics. The students learn these concepts through designing, building, and testing a home-built light microscope made from component parts. We describe the experimental equipment and basic measurements students can perform to learn principles, technique, accuracy, and resolution of measurement. Students find the magnification and test the resolution of the microscope system they build. The system is open and versatile to allow advanced building projects, such as epi-fluorescence, total internal reflection fluorescence, and optical trapping. We have used this equipment in an optics course, an advanced laboratory course, and graduate-level training modules.

physics.ed-ph↗

arXiv2014

Kinesin Motor Transport is Altered by Macromolecular Crowding and Transiently Associated Microtubule-Associated Proteins

Intracellular transport of vesicular cargos, organelles, and other macromolecules is an essential process to move large items through a crowded, and inhomogeneous cellular environment. In an effort to dissect the fundamental effects of crowding and an increasingly complex cellular environment on the transport of individual motor proteins, we have performed in vitro reconstitution experiments with single kinesin-1 motors walking on microtubules in the presence of crowding agents and transient microtubule-associated proteins that more closely emulate the cellular environment. Macromolecular crowding due to inert polymers caused enhanced run lengths of motors, but displayed an increased tendency for non-specific motor association and diffusion, most likely due to depletion interactions. We found that transiently bound associated proteins slowed forward motion, but did not drastically affect the association times, in opposition to previously reported obstacle properties of stably associated microtubule-associated proteins, such as the neuronal protein tau. Such studies of the transport properties of molecular motors in increasingly complex reconstituted environments are important to illuminate the fundamental biophysical principles underlying the essential process of intracellular cargo transport.

q-bio.BM↗

arXiv2003

Mobility of Taxol in Microtubule Bundles

Mobility of taxol inside microtubules was investigated using fluorescence recovery after photobleaching (FRAP) on flow-aligned bundles. Bundles were made of microtubules with either GMPCPP or GTP at the exchangeable site on the tubulin dimer. Recovery times were sensitive to bundle thickness and packing, indicating that taxol molecules are able to move laterally through the bundle. The density of open binding sites along a microtubule was varied by controlling the concentration of taxol in solution for GMPCPP samples. With > 63% sites occupied, recovery times were independent of taxol concentration and, therefore, inversely proportional to the microscopic dissociation rate, k_{off}. It was found that 10*k_{off} (GMPCPP) ~ k_{off} (GTP), consistent with, but not fully accounting for, the difference in equilibrium constants for taxol on GMPCPP and GTP microtubules. With < 63% sites occupied, recovery times decreased as ~ [Tax]^{-1/5} for both types of microtubules. We conclude that the diffusion of taxol along the microtubule interior is hindered by rebinding events when open sites are within ~7 nm of each other.

q-bio.SC↗