SearcharxivSearch

arXiv subjects

Jennifer N. Kampe

Publications and source records attributed to Jennifer N. Kampe.

4 recordsLinked to original sources

Physics-Informed Learning for Robust Acoustic Localization with Calibrated Uncertainty

Recent advances in Passive Acoustic Monitoring (PAM) offer an opportunity to obtain ecological spatial point-process data at unprecedented scale. However, realizing this opportunity necessitates the development of accurate and scalable localization methods. In real-world outdoor soundscapes, however, the assumptions underlying classical localization methods such as hyperbolic and score-based localization are routinely violated by multipath dominance, near-field effects, and complex propagation. Under these conditions, classical localization methods become brittle, with extreme errors possible even in small detection arrays. Rather than statistically replacing the underlying physics, we propose a method to refine it and increase robustness outside of ideal operating conditions: a learned model operating on physics-informed acoustic features corrects a fast hyperbolic solver where it produces implausible solutions, substantially reducing catastrophic worst-case errors while matching its median accuracy on field data. We further provide calibrated, geometry-aware uncertainty estimates suitable for propagation into downstream spatial models. Evaluating on distributed microphone arrays in real and simulated outdoor environments, we demonstrate that the proposed method yields robust, uncertainty-aware localization, providing a step toward scalable automated wildlife monitoring in complex acoustic environments.

stat.ML

ForestIR: Physics-Informed Forest Sound Simulation for Array-Based Bioacoustic Remote Sensing

Microphone array-based passive acoustic monitoring is increasingly used for biodiversity sensing in forests. However, design and evaluation of array systems and configurations remains difficult since field recordings are costly, difficult to reproduce, and provide limited control over forest and atmospheric conditions. We present ForestIR, a physics-informed and reproducible simulation framework that links forest and environmental conditions to microphone-array recordings for bioacoustic remote sensing. Through a more realistic sound propagation method and a systematic control over array design and environmental factors, ForestIR provides a practical simulation framework for optimizing array-based monitoring systems, especially for sound source localization purposes. ForestIR generates source-microphone impulse responses (IRs) under user-controlled forest and atmospheric conditions, and renders synthetic array recordings by convolving test signals with controlled background noise. We evaluate and demonstrate realistic features of ForestIR through experiments based on localization sensitivity to forest layout and atmospheric conditions, and also comparison between simulated IRs with sine-sweep IR measurements from a field experiment. ForestIR provides a practical way to test how forest and ground conditions, atmospheric state, and array geometry affect bioacoustic localization, and can support microphone-array design, robustness testing, and synthetic-data generation for passive acoustic monitoring.

eess.AS

Leveraging ontologies to predict biological activity of chemicals across genes

High-throughput screening (HTS) is useful for evaluating chemicals for potential human health risks. However, given the extraordinarily large number of genes, assay endpoints, and chemicals of interest, available data are sparse, with dose-response curves missing for the vast majority of chemical-gene pairs. Although gene ontologies characterize similarity among genes with respect to known cellular functions and biological pathways, the sensitivity of various pathways to environmental contaminants remains unclear. We propose a novel Dose-Activity Response Tracking (DART) approach to predict the biological activity of chemicals across genes using information on chemical structural properties and gene ontologies within a Bayesian factor model. Designed to provide toxicologists with a flexible tool applicable across diverse HTS assay platforms, DART reveals the latent processes driving dose-response behavior and predicts new activity profiles for chemical-gene pairs lacking experimental data. We demonstrate the performance of DART through simulation studies and an application to a vast new multi-experiment data set consisting of dose-response observations generated by the exposure of HepG2 cells to per- and polyfluoroalkyl substances (PFAS), where it provides actionable guidance for chemical prioritization and inference on the structural and functional mechanisms underlying assay activation.

stat.AP

Link prediction in ecological networks under extreme taxonomic bias

Ecological networks offer powerful insights into community function, but without first characterizing these networks accurately, our ability to detect and interpret changes under environmental stress is limited. We develop an approach to reduce bias in link prediction in the common scenario in which data are derived from studies focused on a small number of species. Our Extended Covariate-Informed Link Prediction (COIL+) framework employs a latent factor model that flexibly borrows information across species, incorporates species traits and phylogeny, and leverages information from multiple studies to address uncertainty in species occurrence. We also propose a trait-matching procedure that allows heterogeneity in species-level trait-interaction associations. We illustrate the approach with a literature-based dataset of 268 sources reporting Afrotropical frugivory and compare performance with and without correction for occurrence uncertainty. COIL+ substantially improves link prediction and reduces sampling bias, revealing 5637 likely but unobserved frugivory interactions (a median of nine additional interactions per frugivore). Newly predicted interactions are concentrated among poorly sampled frugivores, such as the water chevrotain (Hyemoschus aquaticus, a small forest-dwelling ungulate) and the rufous-bellied helmetshrike (Prionops rufiventris, a passerine bird of East African tropical forests). Additionally, the method improves model discrimination compared to existing methods under strong taxonomic bias and narrow study focus. This framework generalizes to diverse network contexts and provides a useful tool for link prediction in the face of biased interaction data.

stat.ME