arXiv subjects

Jenny Hamer

Publications and source records attributed to Jenny Hamer.

8 recordsLinked to original sources

arXiv2026

MetaPerch: Learning from metadata for bioacoustics foundation models

Bioacoustic foundation models rely on large-scale citizen science platforms like Xeno-Canto for geographically and ecologically diverse data. Recent work has shown that supervision alone can produce SotA species detection models when trained on this large-scale data -- however, there remains unutilized potential in the form of recording metadata readily available within these community-driven data hubs. In this work, we explore the use of metadata -- such as location and time -- as auxiliary supervision signals, allowing the model to leverage species-metadata correlations in its learned representation. Auxiliary metadata losses provide additional information beyond vocalizations alone that can encourage a richer, more robust representation that generalizes better to species distribution and acoustic domain shifts -- important challenges for deployment in real-world passive acoustic monitoring (PAM) settings. We introduce MetaPerch, a new foundation model that achieves strong species identification performance across multiple challenging domains and present an extensive empirical study of the effects of 9 diverse metadata sources on 17 bioacoustic datasets.

cs.LG↗

arXiv2026

Expected Reward Prediction, with Applications to Model Routing

Reward models are a standard tool to score responses from LLMs. Reward models are built to rank responses to a fixed prompt sampled from a single model, for example to choose the best of n sampled responses. In this paper, we study whether scores from response-level reward models lifted to score a model's suitability for a prompt, prior to seeing responses from that model. Specifically, we show that it is straightforward to predict the expected reward that an LLM would earn from the reward model under repeated sampling. Further, we show that these expected reward predictions are precise and discriminative enough to support an application to a model routing protocol that routes prompts to models at inference time to maximize reward while controlling computational cost. We demonstrate the performance of this routing procedure on the open-perfectblend dataset, using a model pool composed of Llama3.1-Instruct 8B/70B, Gemma2-IT 9B/27B, and Gemma1-IT 7B models. Our simple expected reward prediction--based routing (ERP) outperforms baselines that route prompts to models with the best average performance within each prompt's category, and explains the success of more complex routing protocols that implicitly estimate an expected reward. Our approach has the added advantage of being trivially extensible as new models are added to the pool.

cs.CL↗

arXiv2025

Perch 2.0 transfers 'whale' to underwater tasks

Perch 2.0 is a supervised bioacoustics foundation model pretrained on 14,597 species, including birds, mammals, amphibians, and insects, and has state-of-the-art performance on multiple benchmarks. Given that Perch 2.0 includes almost no marine mammal audio or classes in the training data, we evaluate Perch 2.0 performance on marine mammal and underwater audio tasks through few-shot transfer learning. We perform linear probing with the embeddings generated from this foundation model and compare performance to other pretrained bioacoustics models. In particular, we compare Perch 2.0 with previous multispecies whale, Perch 1.0, SurfPerch, AVES-bio, BirdAVES, and Birdnet V2.3 models, which have open-source tools for transfer-learning and agile modeling. We show that the embeddings from the Perch 2.0 model have consistently high performance for few-shot transfer learning, generally outperforming alternative embedding models on the majority of tasks, and thus is recommended when developing new linear classifiers for marine mammal classification with few labeled examples.

cs.LG↗

arXiv2025

Perch 2.0: The Bittern Lesson for Bioacoustics

Perch is a performant pre-trained model for bioacoustics. It was trained in supervised fashion, providing both off-the-shelf classification scores for thousands of vocalizing species as well as strong embeddings for transfer learning. In this new release, Perch 2.0, we expand from training exclusively on avian species to a large multi-taxa dataset. The model is trained with self-distillation using a prototype-learning classifier as well as a new source-prediction training criterion. Perch 2.0 obtains state-of-the-art performance on the BirdSet and BEANS benchmarks. It also outperforms specialized marine models on marine transfer learning tasks, despite having almost no marine training data. We present hypotheses as to why fine-grained species classification is a particularly robust pre-training task for bioacoustics.

cs.LG↗

arXiv2025

The Search for Squawk: Agile Modeling in Bioacoustics

Passive acoustic monitoring (PAM) has shown great promise in helping ecologists understand the health of animal populations and ecosystems. However, extracting insights from millions of hours of audio recordings requires the development of specialized recognizers. This is typically a challenging task, necessitating large amounts of training data and machine learning expertise. In this work, we introduce a general, scalable and data-efficient system for developing recognizers for novel bioacoustic problems in under an hour. Our system consists of several key components that tackle problems in previous bioacoustic workflows: 1) highly generalizable acoustic embeddings pre-trained for birdsong classification minimize data hunger; 2) indexed audio search allows the efficient creation of classifier training datasets, and 3) precomputation of embeddings enables an efficient active learning loop, improving classifier quality iteratively with minimal wait time. Ecologists employed our system in three novel case studies: analyzing coral reef health through unidentified sounds; identifying juvenile Hawaiian bird calls to quantify breeding success and improve endangered species monitoring; and Christmas Island bird occupancy modeling. We augment the case studies with simulated experiments which explore the range of design decisions in a structured way and help establish best practices. Altogether these experiments showcase our system's scalability, efficiency, and generalizability, enabling scientists to quickly address new bioacoustic challenges.

eess.AS↗

arXiv2024

Simple Steps to Success: A Method for Step-Based Counterfactual Explanations

Algorithmic recourse is a process that leverages counterfactual explanations, going beyond understanding why a system produced a given classification, to providing a user with actions they can take to change their predicted outcome. Existing approaches to compute such interventions -- known as recourse -- identify a set of points that satisfy some desiderata -- e.g. an intervention in the underlying causal graph, minimizing a cost function, etc. Satisfying these criteria, however, requires extensive knowledge of the underlying model structure, an often unrealistic amount of information in several domains. We propose a data-driven and model-agnostic framework to compute counterfactual explanations. We introduce StEP, a computationally efficient method that offers incremental steps along the data manifold that directs users towards their desired outcome. We show that StEP uniquely satisfies a desirable set of axioms. Furthermore, via a thorough empirical and theoretical investigation, we show that StEP offers provable robustness and privacy guarantees while outperforming popular methods along important metrics.

cs.LG↗

arXiv2024

Leveraging tropical reef, bird and unrelated sounds for superior transfer learning in marine bioacoustics

Machine learning has the potential to revolutionize passive acoustic monitoring (PAM) for ecological assessments. However, high annotation and compute costs limit the field's efficacy. Generalizable pretrained networks can overcome these costs, but high-quality pretraining requires vast annotated libraries, limiting its current applicability primarily to bird taxa. Here, we identify the optimum pretraining strategy for a data-deficient domain using coral reef bioacoustics. We assemble ReefSet, a large annotated library of reef sounds, though modest compared to bird libraries at 2% of the sample count. Through testing few-shot transfer learning performance, we observe that pretraining on bird audio provides notably superior generalizability compared to pretraining on ReefSet or unrelated audio alone. However, our key findings show that cross-domain mixing which leverages bird, reef and unrelated audio during pretraining maximizes reef generalizability. SurfPerch, our pretrained network, provides a strong foundation for automated analysis of marine PAM data with minimal annotation and compute costs.

cs.SD↗

arXiv2023

BIRB: A Generalization Benchmark for Information Retrieval in Bioacoustics

The ability for a machine learning model to cope with differences in training and deployment conditions--e.g. in the presence of distribution shift or the generalization to new classes altogether--is crucial for real-world use cases. However, most empirical work in this area has focused on the image domain with artificial benchmarks constructed to measure individual aspects of generalization. We present BIRB, a complex benchmark centered on the retrieval of bird vocalizations from passively-recorded datasets given focal recordings from a large citizen science corpus available for training. We propose a baseline system for this collection of tasks using representation learning and a nearest-centroid search. Our thorough empirical evaluation and analysis surfaces open research directions, suggesting that BIRB fills the need for a more realistic and complex benchmark to drive progress on robustness to distribution shifts and generalization of ML models.

cs.LG↗