arXiv subjects

Jens Kirchner

Publications and source records attributed to Jens Kirchner.

11 recordsLinked to original sources

arXiv2025

Vessel Network Topology in Molecular Communication: Insights from Experiments and Theory

The notion of synthetic molecular communication (MC) refers to the transmission of information via signaling molecules and is foreseen to enable innovative medical applications in the human cardiovascular system (CVS). Crucially, the design of such applications requires accurate and experimentally validated channel models that characterize the propagation of signaling molecules, not just in individual blood vessels, but in complex vessel networks (VNs), as prevalent in the CVS. However, experimentally validated models for MC in VNs remain scarce. To address this gap, we propose a novel channel model for MC in complex VN topologies, which captures molecular transport via advection, molecular and turbulent diffusion, as well as adsorption and desorption at the vessel walls. We specialize this model for superparamagnetic iron-oxide nanoparticles (SPIONs) as signaling molecules by introducing a new receiver (RX) model for planar coil inductive sensors, enabling end-to-end experimental validation with a dedicated SPION testbed. Validation covers a range of channel topologies, from single-vessel topologies to branched VNs with multiple paths between transmitter (TX) and RX. Additionally, to quantify how the VN topology impacts signal quality, and inspired by multi-path propagation models in conventional wireless communications, we introduce two metrics, namely molecule delay and multi-path spread. We show that these metrics link the VN structure to molecule dispersion induced by the VN and mediately to the resulting signal-to-noise ratio (SNR) at the RX. The proposed VN structure-SNR link is validated experimentally, demonstrating that the proposed framework can support tasks such as optimal sensor placement in the CVS or the identification of suitable testbed topologies for specific SNR requirements. All experimental data are openly available on Zenodo.

q-bio.QM↗

arXiv2024

Molecular Signal Reception in Complex Vessel Networks: The Role of the Network Topology

The notion of synthetic molecular communication (MC) refers to the transmission of information via molecules and is largely foreseen for use within the human body, where traditional electromagnetic wave (EM)-based communication is impractical. MC is anticipated to enable innovative medical applications, such as early-stage tumor detection, targeted drug delivery, and holistic approaches like the Internet of Bio-Nano Things (IoBNT). Many of these applications involve parts of the human cardiovascular system (CVS), here referred to as networks, posing challenges for MC due to their complex, highly branched vessel structures. To gain a better understanding of how the topology of such branched vessel networks affects the reception of a molecular signal at a target location, e.g., the network outlet, we present a generic analytical end-to-end model that characterizes molecule propagation and reception in linear branched vessel networks (LBVNs). We specialize this generic model to any MC system employing superparamagnetic iron-oxide nanoparticles (SPIONs) as signaling molecules and a planar coil as receiver (RX). By considering components that have been previously established in testbeds, we effectively isolate the impact of the network topology and validate our theoretical model with testbed data. Additionally, we propose two metrics, namely the molecule delay and the multi-path spread, that relate the LBVN topology to the molecule dispersion induced by the network, thereby linking the network structure to the signal-to-noise ratio (SNR) at the target location. This allows the characterization of the SNR at any point in the network solely based on the network topology. Consequently, our framework can, e.g., be exploited for optimal sensor placement in the CVS or identification of suitable testbed topologies for given SNR requirements.

cs.ET↗

arXiv2023

Artificial Intelligence for Molecular Communication

Molecular communication is a novel approach for data transmission between miniaturized devices, especially in contexts where electrical signals are to be avoided. The communication is based on sending molecules (or other particles) at nano scale through channel instead sending electrons over a wire. Molecular communication devices have a large potential in medical applications as they offer an alternative to antenna-based transmission systems that may not be applicable due to size, temperature, or radiation constraints. The communication is achieved by transforming a digital signal into concentrations of molecules. These molecules are then detected at the other end of the communication channel and transformed back into a digital signal. Accurately modeling the transmission channel is often not possible which may be due to a lack of data or time-varying parameters of the channel (e. g., the movements of a person wearing a medical device). This makes demodulation of the signal very difficult. Many approaches for demodulation have been discussed with one particular approach having tremendous success: artificial neural networks. These networks imitate the decision process in the human brain and are capable of reliably classifying noisy input data. Training such a network relies on a large set of training data. As molecular communication as a technology is still in its early development phase, this data is not always readily available. We discuss neural network-based demodulation approaches relying on synthetic data based on theoretical channel models as well as works using actual measurements produced by a prototype test bed. In this work, we give a general overview over the field molecular communication, discuss the challenges in the demodulations process of transmitted signals, and present approaches to these challenges that are based on artificial neural networks.

cs.ET↗

arXiv2023

Experimental Research in Synthetic Molecular Communications -- Part I: Overview and Short-Range Systems

Since its emergence from the communication engineering community around one and a half decades ago, the field of Synthetic Molecular Communication (SMC) has experienced continued growth, both in the number of technical contributions from a vibrant community and in terms of research funding. Throughout this process, the vision of SMC as a novel, revolutionary communication paradigm has constantly evolved, driven by feedback from theoretical and experimental studies, respectively. It is believed that especially the latter ones will be crucial for the transition of SMC towards a higher technology readiness level in the near future. In this spirit, we present here a comprehensive survey of experimental research in SMC. In particular, this survey focuses on highlighting the major drivers behind different lines of experimental research in terms of the respective envisioned applications. This approach allows us to categorize existing works and identify current research gaps that still hinder the development of practical SMC-based applications. Our survey consists of two parts; this paper and a companion paper. While the companion paper focuses on SMC with relatively long communication ranges, this paper covers SMC over short distances of typically not more than a few millimeters.

cs.ET↗

arXiv2023

Experimental Research in Synthetic Molecular Communications -- Part II: Long-Range Communication

In this second part of our survey on experimental research in Synthetic Molecular Communication (SMC), we review works on long-range SMC systems, i.e., systems with communication ranges of more than a few millimeters. Despite the importance of experimental research for the evolution of SMC towards a mature communication paradigm that will eventually support revolutionary applications beyond the reach of today's prevalent communication paradigms, the existing body of literature is still comparatively sparse. Long-range SMC systems have been proposed in the literature for information transmission in two types of fluid media, liquid and air. While both types of SMC systems, liquid-based and air-based systems, rely on encoding and transmitting information using molecules, they differ substantially in terms of the physical system designs and in the type of applications they are intended for. In this paper, we present a systematic characterization of experimental works on long-range SMC that reveals the major drivers of these works in terms of the respective target applications. Furthermore, the physical designs for long-range SMC proposed in the literature are comprehensively reviewed. In this way, our survey will contribute to making experimental research in this field more accessible and identifying novel directions for future research.

cs.ET↗

arXiv2022

Experimental System for Molecular Communication in Pipe Flow With Magnetic Nanoparticles

In the emerging field of molecular communication (MC), testbeds are needed to validate theoretical concepts, motivate applications, and guide further modeling efforts. To this end, this paper presents a flexible and extendable in-vessel testbed for flow-based macroscopic MC, abstractly modeling, e.g., a part of a chemical reactor or a blood vessel. Signaling is based on injecting non-reactive superparamagnetic iron oxide nanoparticles (SPIONs) dispersed in an aqueous suspension into a tube with background flow. A commercial magnetic susceptometer is used for non-intrusive downstream signal reception. To shed light on the operation of the testbed, we identify the physical mechanisms governing the transmission, propagation, and reception of the information-carrying SPIONs. Moreover, to facilitate system design, we propose a closed-form parametric expression for the end-to-end channel impulse response (CIR). The proposed CIR model is shown to consistently capture the experimentally observed distance-dependent impulse response peak heights and peak decays for transmission distances from 5cm to 40cm. Moreover, to validate our testbed, reliable communication is demonstrated based on experimental data for model-agnostic and model-based detection methods.

cs.ET↗

arXiv2020

Colour-Specific Microfluidic Droplet Detection for Molecular Communication

Droplet-based microfluidic systems are a promising platform forlab-on-a-chip (LoC) applications. These systems can also be used toenhance LoC applications with integrated droplet control information or for data transmission scenarios in the context of molecular communication. For both use-cases the detection and characterisation of droplets in small microfluidic channels is crucial. So far, only complex lab setups with restricted capabilities have been presented as detection devices. We present a new low-cost and portable droplet detector. The device is used to confidently distinguish between individual droplets in a droplet-based microfluidic system. Using on-off keying a 16-bit sequence is successfully transmittedfor the first time with such a setup. Furthermore, the devices capabilities to characterise droplets regarding colour and size are demonstrated. Such an application of a spectral sensor in a microfluidic system presents new possibilities, such as colour-coded data transmission or analysis of droplet content.

cs.ET↗

arXiv2019

Novel Receiver for Superparamagnetic Iron Oxide Nanoparticles in a Molecular Communication Setting

Superparamagnetic iron oxide nanoparticles (SPIONs) have recently been introduced as information carriers in a testbed for molecular communication (MC) in duct flow. Here, a new receiver for this testbed is presented, based on the concept of a bridge circuit. The capability for a reliable transmission using the testbed and detection of the proposed receiver was evaluated by sending a text message and a 80 bit random sequence at a bit rate of 1/s, which resulted in a bit error rate of 0 %. Furthermore, the sensitivity of the device was assessed by a dilution series, which gave a limit for the detectability of peaks between 0.1 to 0.5 mg/mL. Compared to the commercial susceptometer that was previously used as receiver, the new detector provides an increased sampling rate of 100 samples/s and flexibility in the dimensions of the propagation channel. Furthermore, it allows to implement both single-ended and differential signaling in SPION-bases MC testbeds.

eess.SP↗

arXiv2018

Biological Optical-to-Chemical Signal Conversion Interface: A Small-scale Modulator for Molecular Communications

Although many exciting applications of molecular communication (MC) systems are envisioned to be at microscale, the MC testbeds reported so far are mostly at macroscale. To link the macroworld to the microworld, we propose and demonstrate a biological signal conversion interface that can also be seen as a microscale modulator. In particular, the proposed interface transduces an optical signal, which is controlled using an LED, into a chemical signal by changing the pH of the environment. The modulator is realized using E. coli bacteria as microscale entity expressing the light-driven proton pump gloeorhodopsin from Gloeobacter violaceus. Upon inducing external light stimuli, these bacteria locally change their surrounding pH level by exporting protons into the environment. To verify the effectiveness of the proposed optical-to-chemical signal converter, we analyze the pH signal measured by a pH sensor, which serves as receiver. We develop an analytical parametric model for the induced chemical signal as a function of the applied optical signal. Using this model, we derive a training-based channel estimator which estimates the parameters of the proposed model to fit the measurement data. We further derive the optimal maximum likelihood detector and a suboptimal low-complexity detector to recover the transmitted data from the measured received signal. It is shown that the proposed parametric model is in good agreement with the measurement data. Moreover, for an example scenario, we show that the proposed setup is able to successfully convert an optical signal representing a sequence of binary symbols into a chemical signal with a bit rate of 1 bit/minute and recover the transmitted data from the chemical signal using the proposed estimation and detection~schemes. The proposed modulator may form the basis for future MC testbeds and applications at microscale.

cs.ET↗

arXiv2018

Biological Optical-to-Chemical Signal Conversion Interface: A Small-scale Modulator for Molecular Communications

Although many exciting applications of molecular communication (MC) systems are envisioned to be at microscale, the available MC testbeds reported in the literature so far are mostly at macroscale. This may partially be due to the fact that controlling an MC system at microscale is quite challenging. To link the macroworld to the microworld, we propose a biological signal conversion interface that can also be seen as a microscale modulator. This interface translates an optical signal, which can be easily controlled using a light-emitting diode (LED), into a chemical signal by changing the pH of the environment. The modulator is realized using \textit{Escherichia coli} bacteria that express the light-driven proton pump gloeorhodopsin from \textit{Gloeobacter violaceus}. Upon inducing external light stimuli, these bacteria can locally change their surrounding pH level by exporting protons into the environment. Based on measurement data from a testbed, we develop an analytical model for the induced chemical signal as a function of the applied optical signal. Finally, using a pH sensor as detector, we show for an example scenario that the proposed setup is able to successfully convert an optical signal representing a sequence of binary symbols into a chemical signal with a bit rate of $1$~bit/min.

cs.ET↗

arXiv2018

Experimental Molecular Communication Testbed Based on Magnetic Nanoparticles in Duct Flow

Simple and easy to implement testbeds are needed to further advance molecular communication research. To this end, this paper presents an in-vessel molecular communication testbed using magnetic nanoparticles dispersed in an aqueous suspension as they are also used for drug targeting in biotechnology. The transmitter is realized by an electronic pump for injection via a Y-connector. A second pump provides a background flow for signal propagation. For signal reception, we employ a susceptometer, an electronic device including a coil, where the magnetic particles move through and generate an electrical signal. We present experimental results for the transmission of a binary sequence and the system response following a single injection. For this flow-driven particle transport, we propose a simple parameterized mathematical model for evaluating the system response.

cs.ET↗