SearcharxivSearch

arXiv subjects

Jeremy C. Palmer

Publications and source records attributed to Jeremy C. Palmer.

9 recordsLinked to original sources

Guided Synthesis of EMT Zeolites by Machine Learning

Zeolites are microporous crystalline materials with diverse frameworks, widely used in industrial applications such as petroleum refining and molecular separation. Unlike most zeolites, EMT can be synthesized under mild conditions (at low temperatures and without the use of organic structure-directing agents), making it attractive for cost-effective and environmentally sustainable production. However, the specific synthesis conditions that selectively produce EMT rather than similar frameworks like FAU are not yet well established. In this work, we develop machine learning (ML) models to guide the discovery of synthesis conditions for EMT zeolites. Our dataset comprises 174 experimental synthesis attempts, recording reaction time, temperature, silica and alumina sources, Si/Al stoichiometric ratio, and other synthesis parameters. We apply both classical ML methods and pretrained foundation models to predict zeolite framework outcomes from these synthesis parameters. Feature importance analysis identifies critical parameters for EMT formation, validating known synthesis principles. Leveraging the ML models, we explore the synthesis space and identify six promising new conditions for EMT formation. Experimental validation confirms EMT crystallization in five cases, including two with Si/Al stoichiometric ratios outside the training dataset's range. Evaluation on independent literature-reported synthesis conditions further demonstrates the generalizability of the model. This work demonstrates a data-driven approach to accelerating zeolite synthesis, closing the loop between ML prediction and experimental validation.

cond-mat.mtrl-sci

Simulating hydrodynamic interactions in colloidal suspensions using multiparticle collision dynamics with rigid-body constraints

We develop a method for simulating colloidal suspensions using multiparticle collision dynamics (MPCD) with a discrete particle model represented as a rigid body. The key steps for incorporating the rigid-body constraints are to thermalize the velocities of the discrete sites before they participate in the MPCD collision step, then transfer momentum from the sites to the rigid body. We demonstrate that the rigid-body model produces the expected statistics for a single spherical particle and the same transport properties for a hard-sphere colloidal suspension as an equivalent model using harmonic bonds to maintain the site geometry. Importantly, the rigid-body model has less computational overhead and permits a larger simulation timestep than the harmonic-bond model, leading to a nearly order of magnitude speedup in benchmark simulations of hard-sphere colloidal suspensions. Our method is compatible with arbitrary discretization, so it enables more efficient MPCD simulations of suspensions of colloidal particles with complex shapes.

cond-mat.soft

Effects of skewing collision cells on transport properties in multiparticle collision dynamics simulations

Multiparticle collision dynamics (MPCD) is a mesoscale simulation technique that uses a simplified solvent to model hydrodynamic interactions. Rather than interact through pairwise forces, MPCD solvent particles undergo momentum-exchanging collisions within spatially localized cells according to prescribed rules. The conventional MPCD algorithm employs cubic collision cells, but this choice is not optimal for systems that are most naturally described using skewed simulation boxes. Here, we investigate the behavior of a modified MPCD scheme in which the collision cells are aligned with the vectors that define a triclinic (parallelepiped) simulation box. We find that skewing the collision cells has a small but statistically significant impact on the transport properties of the pure solvent. Similar, but more pronounced, effects are found for nearly hard spheres in solution, including a significant decrease in their nominal self-diffusion coefficient and unphysical anisotropy in their self-diffusion tensor. Thus, our analysis indicates that skewed MPCD collision cells may result in spurious behavior and should be used with caution. We posit that these artifacts may be mitigated by grid-free schemes for placing particles into collision cells.

cond-mat.soft

Modeling hydrodynamic interactions in soft materials with multiparticle collision dynamics

Multiparticle collision dynamics (MPCD) is a flexible and robust mesoscale computational technique for simulating solvent-mediated hydrodynamic interactions in soft materials. Here, we provide a critical overview of the MPCD method and summarize its current strengths and limitations. The capabilities of the method are highlighted by reviewing its recent applications to simulate diverse phenomena, ranging from the flow of complex fluids and thermo-osmotic transport to bacterial swimming and active particle self-assembly. We also discuss outstanding challenges and emerging methodological developments that are expected to greatly expand the applicability of MPCD to other systems of technological importance.

cond-mat.soft

Coupling of nanoparticle dynamics to polymer center-of-mass motion in semidilute polymer solutions

We investigate the dynamics of nanoparticles in semidilute polymer solutions when the nanoparticles are comparably sized to the polymer coils using explicit- and implicit-solvent simulation methods. The nanoparticle dynamics are subdiffusive on short time scales before transitioning to diffusive motion on long time scales. The long-time diffusivities scale according to theoretical predictions based on full dynamic coupling to the polymer segmental relaxations. In agreement with our recent experiments, however, we observe that the nanoparticle subdiffusive exponents are significantly larger than predicted by the coupling theory over a broad range of polymer concentrations. We attribute this discrepancy in the subdiffusive regime to the presence of an additional coupling mechanism between the nanoparticle dynamics and the polymer center-of-mass motion, which differs from the polymer relaxations that control the long-time diffusion. This coupling is retained even in the absence of many-body hydrodynamic interactions when the long-time dynamics of the colloids and polymers are matched.

cond-mat.soft

Density and bond-orientational relaxations in supercooled water

Recent computational studies have reported evidence of a metastable liquid-liquid phase transition (LLPT) in molecular models of water under deeply supercooled conditions. A competing hypothesis suggests, however, that non-equilibrium artifacts associated with coarsening of the stable crystal phase have been mistaken for an LLPT in these models. Such artifacts are posited to arise due to a separation of time scales in which density fluctuations in the supercooled liquid relax orders of magnitude faster than those associated with bond-orientational order. Here, we use molecular simulation to investigate the relaxation of density and bond-orientational fluctuations in three molecular models of water (ST2, TIP5P and TIP4P/2005) in the vicinity of their reported LLPT. For each model, we find that density is the slowly relaxing variable under such conditions. We also observe similar behavior in the coarse-grained mW model of water. Our findings therefore challenge the key physical assumption underlying the competing hypothesis.e find that density relaxes significantly faster than bond-orientational order, as incorrectly predicted by this competing hypothesis.

cond-mat.stat-mech

Response to Comment [arXiv:1407.6854] on Palmer et al., Nature, 510, 385, 2014

We respond to a Comment [arXiv:1407.6854 (2014)] on our recent Nature paper [Nature, 510, 385 (2014)]. We categorically disprove the arguments provided in arXiv:1407.6854 (2014) and thereby further substantiate the evidence we presented in our recent study, demonstrating the existence of a metastable liquid-liquid transition in a molecular model of water. We will make our code publicly available shortly along with proper user documentation that is currently under development.

cond-mat.stat-mech

Two-state thermodynamics of the ST2 model for supercooled water

Thermodynamic properties of the ST2 model for supercooled liquid water exhibit anomalies similar to those observed in real water. A possible explanation of these anomalies is the existence of a metastable, liquid-liquid transition terminated by a critical point. This phenomenon, whose possible existence in real water is the subject of much current experimental work, has been unambiguously demonstrated for this particular model by most recent simulations. In this work, we reproduce the anomalies of two versions of the ST2 model with an equation of state describing water as a non-ideal "mixture" of two different types of local molecular order. We show that the liquid-liquid transition in the ST2 water is energy-driven. This is in contrast to another popular model, mW, in which non-ideality in mixing of two alternative local molecular orders is entropy-driven, and is not sufficiently strong to induce a liquid-liquid transition.

physics.chem-ph