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Jesper Tegnèr

Publications and source records attributed to Jesper Tegnèr.

2 recordsLinked to original sources

Controllability, Multiplexing, and Transfer Learning in Networks using Evolutionary Learning

Networks are fundamental building blocks for representing data, and computations. Remarkable progress in learning in structurally defined (shallow or deep) networks has recently been achieved. Here we introduce evolutionary exploratory search and learning method of topologically flexible networks under the constraint of producing elementary computational steady-state input-output operations. Our results include; (1) the identification of networks, over four orders of magnitude, implementing computation of steady-state input-output functions, such as a band-pass filter, a threshold function, and an inverse band-pass function. Next, (2) the learned networks are technically controllable as only a small number of driver nodes are required to move the system to a new state. Furthermore, we find that the fraction of required driver nodes is constant during evolutionary learning, suggesting a stable system design. (3), our framework allows multiplexing of different computations using the same network. For example, using a binary representation of the inputs, the network can readily compute three different input-output functions. Finally, (4) the proposed evolutionary learning demonstrates transfer learning. If the system learns one function A, then learning B requires on average less number of steps as compared to learning B from tabula rasa. We conclude that the constrained evolutionary learning produces large robust controllable circuits, capable of multiplexing and transfer learning. Our study suggests that network-based computations of steady-state functions, representing either cellular modules of cell-to-cell communication networks or internal molecular circuits communicating within a cell, could be a powerful model for biologically inspired computing. This complements conceptualizations such as attractor based models, or reservoir computing.

cs.NE↗

On the Theory and Algorithm for rigorous discretization in applications of Information Theory

We identify fundamental issues with discretization when estimating information-theoretic quantities in the analysis of data. These difficulties are theoretical in nature and arise with discrete datasets carrying significant implications for the corresponding claims and results. Here we describe the origins of the methodological problems, and provide a clear illustration of their impact with the example of biological network reconstruction. We propose an algorithm (shared information metric) that corrects for the biases and the resulting improved performance of the algorithm demonstrates the need to take due consideration of this issue in different contexts.

q-bio.QM↗