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Jesse W. Wilson

Publications and source records attributed to Jesse W. Wilson.

4 recordsLinked to original sources

Image class translation: visual inspection of class-specific hypotheticals and classification based on translation distance

Purpose: A major barrier to the implementation of artificial intelligence for medical applications is automated CNNs' lack of explainability and high confidence for incorrect decisions, specifically with out-of-domain samples. We propose a generalization of image translation networks for image classification and demonstrate translation networks' potential as a more interpretable alternative to conventional black-box classifiers. Approach: We train an image-to-image network to translate an input image to class-specific hypotheticals, and then compare these with the input, both visually and quantitatively. Translation distances, the degree of alteration needed to conform to one class or another, are examined for clusters and trends, and used as a simple low-dimensional feature vector for classification. Results: On melanoma/benign dermoscopy images, a translation distance classifier achieved 80% accuracy using only a 2-dimensional feature space (versus 85% for a conventional CNN using a ~62,000-dimensional feature space). Visual inspection of rendered images revealed dataset biases, like more scalebars in melanoma photographs than in benign lesions. Image distributions in translation distance space revealed a natural separation along the lines of dermatologist decision to biopsy, rather than between malignant and benign. On bone marrow cytology images, translation distance classifiers outperformed a conventional CNN in both 3-class (92% accuracy vs 89% for CNN) and 6-class (90% vs 86% for CNN) scenarios. Conclusions: This proof-of-concept shows the potential for image-to-image translation to go beyond artistic/stylistic changes and to expose dataset biases, perform dimension reduction and dataset visualization, and in some cases, potentially outperform conventional end-to-end CNN classifiers.

cs.CV

Galvanometer-scanning transient phase microscopy with balanced detection and arbitrary pump polarization

Transient absorption microscopy measures excited-state kinetics based on the imaginary part of the pump-induced perturbation to the complex refractive index, i.e. $\Im \{Δ\mathcal N\}$, with applications in both materials and biomedical sciences. Its complement, transient phase microscopy, enabled by stable inline birefringent interferometry, measures the real part $\Re\{Δ\mathcal N\}$. The ability to switch between absorption and phase measurements may yield a stronger signal, depending on the sample and probe wavelength. To date, however, transient phase has not been coupled with galvanometer scanners, thus limiting it to materials science applications and non-imaging spectroscopy. Here, we extend transient phase microscopy to operate in a galvanometer-scanning microscope with balanced detection, comparing amplitude and phase measurements in graphene (in which amplitude detection has the advantage), hemoglobin and red blood cells (in which phase detection has the advantage). We examine the impacts and limitations introduced by galvanometer scanning, in addition to relocation of the pump-probe combining dichroic to permit arbitrary polarization of the pump.

physics.optics

Low frequency coherent Raman imaging robust to optical scattering

We demonstrate low-frequency interferometric impulsive stimulated Raman scattering (ISRS) imaging with high robustness to distortions by optical scattering. ISRS is a pump-probe coherent Raman spectroscopy that can capture Raman vibrational spectra. Recording of ISRS spectra requires isolation of a probe pulse from the pump pulse. While this separation is simple in non-scattering specimens, such as liquids, scattering leads to significant pump pulse contamination and prevent the extraction of a Raman spectrum. We introduce a robust method for ISRS microscopy that works in complex scattering samples. High signal-to-noise ISRS spectra are obtained even when the pump and probe pulses pass through many scattering layers.

physics.optics

Ultrasensitive Doppler Raman spectroscopy using radio frequency phase shift detection

We introduce the first method to enable an optical amplification of a coherent Raman spectroscopy signal called radio frequency Doppler Raman spectroscopy. Doppler Raman measurements amplify the optical signals in coherent Raman spectroscopy by converting a spectral frequency shift imparted by an impulsive coherent Raman excitation to a change in a probe pulse transit time. This transit time perturbation is detected through the phase of a radio frequency electronic signal measured at a harmonic of the probe pulse train. By exploiting this new capability to scale the signal of a coherent Raman spectroscopic signal, we open the potential to detect very weak Raman spectroscopy signals that are currently not observable due to limits of illumination intensity imposed by laser damage to the specimen.

physics.optics