arXiv subjects

Jesus Marco de Lucas

Publications and source records attributed to Jesus Marco de Lucas.

5 recordsLinked to original sources

arXiv2024

From Worms to Mice: Homeostasis Maybe All You Need

In this brief and speculative commentary, we explore ideas inspired by neural networks in machine learning, proposing that a simple neural XOR motif, involving both excitatory and inhibitory connections, may provide the basis for a relevant mode of plasticity in neural circuits of living organisms, with homeostasis as the sole guiding principle. This XOR motif simply signals the discrepancy between incoming signals and reference signals, thereby providing a basis for a loss function in learning neural circuits, and at the same time regulating homeostasis by halting the propagation of these incoming signals. The core motif uses a 4:1 ratio of excitatory to inhibitory neurons, and supports broader neural patterns such as the well-known 'winner takes all' (WTA) mechanism. We examined the prevalence of the XOR motif in the published connectomes of various organisms with increasing complexity, and found that it ranges from tens (in C. elegans) to millions (in several Drosophila neuropils) and more than tens of millions (in mouse V1 visual cortex). If validated, our hypothesis identifies two of the three key components in analogy to machine learning models: the architecture and the loss function. And we propose that a relevant type of biological neural plasticity is simply driven by a basic control or regulatory system, which has persisted and adapted despite the increasing complexity of organisms throughout evolution.

cs.NE↗

arXiv2024

Implementing engrams from a machine learning perspective: XOR as a basic motif

We have previously presented the idea of how complex multimodal information could be represented in our brains in a compressed form, following mechanisms similar to those employed in machine learning tools, like autoencoders. In this short comment note we reflect, mainly with a didactical purpose, upon the basic question for a biological implementation: what could be the mechanism working as a loss function, and how it could be connected to a neuronal network providing the required feedback to build a simple training configuration. We present our initial ideas based on a basic motif that implements an XOR switch, using few excitatory and inhibitory neurons. Such motif is guided by a principle of homeostasis, and it implements a loss function that could provide feedback to other neuronal structures, establishing a control system. We analyse the presence of this XOR motif in the connectome of C.Elegans, and indicate the relationship with the well-known lateral inhibition motif. We then explore how to build a basic biological neuronal structure with learning capacity integrating this XOR motif. Guided by the computational analogy, we show an initial example that indicates the feasibility of this approach, applied to learning binary sequences, like it is the case for simple melodies. In summary, we provide didactical examples exploring the parallelism between biological and computational learning mechanisms, identifying basic motifs and training procedures, and how an engram encoding a melody could be built using a simple recurrent network involving both excitatory and inhibitory neurons.

q-bio.NC↗

arXiv2023

Implementing engrams from a machine learning perspective: matching for prediction

Despite evidence for the existence of engrams as memory support structures in our brains, there is no consensus framework in neuroscience as to what their physical implementation might be. Here we propose how we might design a computer system to implement engrams using neural networks, with the main aim of exploring new ideas using machine learning techniques, guided by challenges in neuroscience. Building on autoencoders, we propose latent neural spaces as indexes for storing and retrieving information in a compressed format. We consider this technique as a first step towards predictive learning: autoencoders are designed to compare reconstructed information with the original information received, providing a kind of predictive ability, which is an attractive evolutionary argument. We then consider how different states in latent neural spaces corresponding to different types of sensory input could be linked by synchronous activation, providing the basis for a sparse implementation of memory using concept neurons. Finally, we list some of the challenges and questions that link neuroscience and data science and that could have implications for both fields, and conclude that a more interdisciplinary approach is needed, as many scientists have already suggested.

q-bio.NC↗

arXiv2019

INDIGO-DataCloud:A data and computing platform to facilitate seamless access to e-infrastructures

This paper describes the achievements of the H2020 project INDIGO-DataCloud. The project has provided e-infrastructures with tools, applications and cloud framework enhancements to manage the demanding requirements of scientific communities, either locally or through enhanced interfaces. The middleware developed allows to federate hybrid resources, to easily write, port and run scientific applications to the cloud. In particular, we have extended existing PaaS (Platform as a Service) solutions, allowing public and private e-infrastructures, including those provided by EGI, EUDAT, and Helix Nebula, to integrate their existing services and make them available through AAI services compliant with GEANT interfederation policies, thus guaranteeing transparency and trust in the provisioning of such services. Our middleware facilitates the execution of applications using containers on Cloud and Grid based infrastructures, as well as on HPC clusters. Our developments are freely downloadable as open source components, and are already being integrated into many scientific applications.

cs.DC↗

arXiv2016

Status Report of the DPHEP Collaboration: A Global Effort for Sustainable Data Preservation in High Energy Physics

Data from High Energy Physics (HEP) experiments are collected with significant financial and human effort and are mostly unique. An inter-experimental study group on HEP data preservation and long-term analysis was convened as a panel of the International Committee for Future Accelerators (ICFA). The group was formed by large collider-based experiments and investigated the technical and organizational aspects of HEP data preservation. An intermediate report was released in November 2009 addressing the general issues of data preservation in HEP and an extended blueprint paper was published in 2012. In July 2014 the DPHEP collaboration was formed as a result of the signature of the Collaboration Agreement by seven large funding agencies (others have since joined or are in the process of acquisition) and in June 2015 the first DPHEP Collaboration Workshop and Collaboration Board meeting took place. This status report of the DPHEP collaboration details the progress during the period from 2013 to 2015 inclusive.

hep-ex↗